Active Classification: Theory and Application to Underwater Inspection

We discuss the problem in which an autonomous vehicle must classify an object based on multiple views. We focus on the active classification setting, where the vehicle controls which views to select to best perform the classification. The problem is formulated as an extension to Bayesian active learning, and we show connections to recent theoretical guarantees in this area. We formally analyze the benefit of acting adaptively as new information becomes available. The analysis leads to a probabilistic algorithm for determining the best views to observe based on information theoretic costs. We validate our approach in two ways, both related to underwater inspection: 3D polyhedra recognition in synthetic depth maps and ship hull inspection with imaging sonar. These tasks encompass both the planning and recognition aspects of the active classification problem. The results demonstrate that actively planning for informative views can reduce the number of necessary views by up to 80% when compared to passive methods.Comment: 16 page

Symmetry Detection of Rational Space Curves from their Curvature and Torsion

We present a novel, deterministic, and efficient method to detect whether a given rational space curve is symmetric. By using well-known differential invariants of space curves, namely the curvature and torsion, the method is significantly faster, simpler, and more general than an earlier method addressing a similar problem. To support this claim, we present an analysis of the arithmetic complexity of the algorithm and timings from an implementation in Sage.Comment: 25 page

Pattern recognition in a multi-sensor environment

Journal ArticleCurrent pattern recognition systems tend to operate on a single sensor, e.g., a camera. however. the need is now evident for pattern recognition systems which can operate in multi-sensor environments. For example, a robotics workstation may use range finders. cameras, tactile pads, etc. The Multi-sensor Kernel System (MKS) provides an efficient and coherent approach to the specification, recovery, and analysis of patterns in the data sensed by such a diverse set of sensors. We demonstrate how much a system can be used to support both feature-based object models as well as structural models. The problems solved is the localization of a three-dimensional object in 3-space. Moreover, MKS allows rapid reconfiguration of the available sensors and the high-level models

Treatment of Group Theory in Spectroscopy

The most important thing to consider when applying group theory is finding the molecule’s point group or its particular symmetry operations. In order to identify a molecule’s symmetry operations, one must first find the molecule’s symmetry elements. In other words, the first stage in utilizing group theory with molecular properties is identifying a molecule’s symmetry elements. For most beginners without experience this has proven to be most difficult because it requires the individual to visually identify the elements of symmetry in a 3D object. However, once this is overcome, applying group theory to forefront point groups and symmetry operations becomes second nature

Image Understanding and Robotics Research at Columbia University

The research investigations of the Vision/Robotics Laboratory at Columbia University reflect the diversity of interests of its four faculty members, two staff programmers and 15 Ph.D. students. Several of the projects involve either a visiting computer science post-doc, other faculty members in the department or the university, or researchers at AT&T Bell Laboratories or Philips laboratories. We list below a summary of our interest and results, together with the principal researchers associated with them. Since it is difficult to separate those aspects of robotic research that are purely visual from those that are vision-like (for example, tactile sensing) or vision-related (for example, integrated vision-robotic systems), we have listed all robotic research that is not purely manipulative

Predicting multibody assembly of proteins

textThis thesis addresses the multi-body assembly (MBA) problem in the context of protein assemblies. [...] In this thesis, we chose the protein assembly domain because accurate and reliable computational modeling, simulation and prediction of such assemblies would clearly accelerate discoveries in understanding of the complexities of metabolic pathways, identifying the molecular basis for normal health and diseases, and in the designing of new drugs and other therapeutics. [...] [We developed] F²Dock (Fast Fourier Docking) which includes a multi-term function which includes both a statistical thermodynamic approximation of molecular free energy as well as several of knowledge-based terms. Parameters of the scoring model were learned based on a large set of positive/negative examples, and when tested on 176 protein complexes of various types, showed excellent accuracy in ranking correct configurations higher (F² Dock ranks the correcti solution as the top ranked one in 22/176 cases, which is better than other unsupervised prediction software on the same benchmark). Most of the protein-protein interaction scoring terms can be expressed as integrals over the occupied volume, boundary, or a set of discrete points (atom locations), of distance dependent decaying kernels. We developed a dynamic adaptive grid (DAG) data structure which computes smooth surface and volumetric representations of a protein complex in O(m log m) time, where m is the number of atoms assuming that the smallest feature size h is [theta](r[subscript max]) where r[subscript max] is the radius of the largest atom; updates in O(log m) time; and uses O(m)memory. We also developed the dynamic packing grids (DPG) data structure which supports quasi-constant time updates (O(log w)) and spherical neighborhood queries (O(log log w)), where w is the word-size in the RAM. DPG and DAG together results in O(k) time approximation of scoring terms where k << m is the size of the contact region between proteins. [...] [W]e consider the symmetric spherical shell assembly case, where multiple copies of identical proteins tile the surface of a sphere. Though this is a restricted subclass of MBA, it is an important one since it would accelerate development of drugs and antibodies to prevent viruses from forming capsids, which have such spherical symmetry in nature. We proved that it is possible to characterize the space of possible symmetric spherical layouts using a small number of representative local arrangements (called tiles), and their global configurations (tiling). We further show that the tilings, and the mapping of proteins to tilings on arbitrary sized shells is parameterized by 3 discrete parameters and 6 continuous degrees of freedom; and the 3 discrete DOF can be restricted to a constant number of cases if the size of the shell is known (in terms of the number of protein n). We also consider the case where a coarse model of the whole complex of proteins are available. We show that even when such coarse models do not show atomic positions, they can be sufficient to identify a general location for each protein and its neighbors, and thereby restricts the configurational space. We developed an iterative refinement search protocol that leverages such multi-resolution structural data to predict accurate high resolution model of protein complexes, and successfully applied the protocol to model gp120, a protein on the spike of HIV and currently the most feasible target for anti-HIV drug design.Computer Science

Research on Symbolic Inference in Computational Vision

This paper provides an overview of ongoing research in the GRASP laboratory which focuses on the general problem of symbolic inference in computational vision. In this report we describe a conceptual framework for this research, and describe our current research programs in the component areas which support this work

Euclidean distance geometry and applications

Euclidean distance geometry is the study of Euclidean geometry based on the concept of distance. This is useful in several applications where the input data consists of an incomplete set of distances, and the output is a set of points in Euclidean space that realizes the given distances. We survey some of the theory of Euclidean distance geometry and some of the most important applications: molecular conformation, localization of sensor networks and statics.Comment: 64 pages, 21 figure