Detection of Thin Boundaries between Different Types of Anomalies in Outlier Detection using Enhanced Neural Networks

Outlier detection has received special attention in various fields, mainly for those dealing with machine learning and artificial intelligence. As strong outliers, anomalies are divided into the point, contextual and collective outliers. The most important challenges in outlier detection include the thin boundary between the remote points and natural area, the tendency of new data and noise to mimic the real data, unlabelled datasets and different definitions for outliers in different applications. Considering the stated challenges, we defined new types of anomalies called Collective Normal Anomaly and Collective Point Anomaly in order to improve a much better detection of the thin boundary between different types of anomalies. Basic domain-independent methods are introduced to detect these defined anomalies in both unsupervised and supervised datasets. The Multi-Layer Perceptron Neural Network is enhanced using the Genetic Algorithm to detect newly defined anomalies with higher precision so as to ensure a test error less than that calculated for the conventional Multi-Layer Perceptron Neural Network. Experimental results on benchmark datasets indicated reduced error of anomaly detection process in comparison to baselines

IMAGE UNDERSTANDING OF MOLAR PREGNANCY BASED ON ANOMALIES DETECTION

Cancer occurs when normal cells grow and multiply without normal control. As the cells multiply, they form an area of abnormal cells, known as a tumour. Many tumours exhibit abnormal chromosomal segregation at cell division. These anomalies play an important role in detecting molar pregnancy cancer. Molar pregnancy, also known as hydatidiform mole, can be categorised into partial (PHM) and complete (CHM) mole, persistent gestational trophoblastic and choriocarcinoma. Hydatidiform moles are most commonly found in women under the age of 17 or over the age of 35. Hydatidiform moles can be detected by morphological and histopathological examination. Even experienced pathologists cannot easily classify between complete and partial hydatidiform moles. However, the distinction between complete and partial hydatidiform moles is important in order to recommend the appropriate treatment method. Therefore, research into molar pregnancy image analysis and understanding is critical. The hypothesis of this research project is that an anomaly detection approach to analyse molar pregnancy images can improve image analysis and classification of normal PHM and CHM villi. The primary aim of this research project is to develop a novel method, based on anomaly detection, to identify and classify anomalous villi in molar pregnancy stained images. The novel method is developed to simulate expert pathologists’ approach in diagnosis of anomalous villi. The knowledge and heuristics elicited from two expert pathologists are combined with the morphological domain knowledge of molar pregnancy, to develop a heuristic multi-neural network architecture designed to classify the villi into their appropriated anomalous types. This study confirmed that a single feature cannot give enough discriminative power for villi classification. Whereas expert pathologists consider the size and shape before textural features, this thesis demonstrated that the textural feature has a higher discriminative power than size and shape. The first heuristic-based multi-neural network, which was based on 15 elicited features, achieved an improved average accuracy of 81.2%, compared to the traditional multi-layer perceptron (80.5%); however, the recall of CHM villi class was still low (64.3%). Two further textural features, which were elicited and added to the second heuristic-based multi-neural network, have improved the average accuracy from 81.2% to 86.1% and the recall of CHM villi class from 64.3% to 73.5%. The precision of the multi-neural network II has also increased from 82.7% to 89.5% for normal villi class, from 81.3% to 84.7% for PHM villi class and from 80.8% to 86% for CHM villi class. To support pathologists to visualise the results of the segmentation, a software tool, Hydatidiform Mole Analysis Tool (HYMAT), was developed compiling the morphological and pathological data for each villus analysis

Performance Evaluation of Network Anomaly Detection Systems

Nowadays, there is a huge and growing concern about security in information and communication technology (ICT) among the scientific community because any attack or anomaly in the network can greatly affect many domains such as national security, private data storage, social welfare, economic issues, and so on. Therefore, the anomaly detection domain is a broad research area, and many different techniques and approaches for this purpose have emerged through the years. Attacks, problems, and internal failures when not detected early may badly harm an entire Network system. Thus, this thesis presents an autonomous profile-based anomaly detection system based on the statistical method Principal Component Analysis (PCADS-AD). This approach creates a network profile called Digital Signature of Network Segment using Flow Analysis (DSNSF) that denotes the predicted normal behavior of a network traffic activity through historical data analysis. That digital signature is used as a threshold for volume anomaly detection to detect disparities in the normal traffic trend. The proposed system uses seven traffic flow attributes: Bits, Packets and Number of Flows to detect problems, and Source and Destination IP addresses and Ports, to provides the network administrator necessary information to solve them. Via evaluation techniques, addition of a different anomaly detection approach, and comparisons to other methods performed in this thesis using real network traffic data, results showed good traffic prediction by the DSNSF and encouraging false alarm generation and detection accuracy on the detection schema. The observed results seek to contribute to the advance of the state of the art in methods and strategies for anomaly detection that aim to surpass some challenges that emerge from the constant growth in complexity, speed and size of today’s large scale networks, also providing high-value results for a better detection in real time.Atualmente, existe uma enorme e crescente preocupação com segurança em tecnologia da informação e comunicação (TIC) entre a comunidade científica. Isto porque qualquer ataque ou anomalia na rede pode afetar a qualidade, interoperabilidade, disponibilidade, e integridade em muitos domínios, como segurança nacional, armazenamento de dados privados, bem-estar social, questões econômicas, e assim por diante. Portanto, a deteção de anomalias é uma ampla área de pesquisa, e muitas técnicas e abordagens diferentes para esse propósito surgiram ao longo dos anos. Ataques, problemas e falhas internas quando não detetados precocemente podem prejudicar gravemente todo um sistema de rede. Assim, esta Tese apresenta um sistema autônomo de deteção de anomalias baseado em perfil utilizando o método estatístico Análise de Componentes Principais (PCADS-AD). Essa abordagem cria um perfil de rede chamado Assinatura Digital do Segmento de Rede usando Análise de Fluxos (DSNSF) que denota o comportamento normal previsto de uma atividade de tráfego de rede por meio da análise de dados históricos. Essa assinatura digital é utilizada como um limiar para deteção de anomalia de volume e identificar disparidades na tendência de tráfego normal. O sistema proposto utiliza sete atributos de fluxo de tráfego: bits, pacotes e número de fluxos para detetar problemas, além de endereços IP e portas de origem e destino para fornecer ao administrador de rede as informações necessárias para resolvê-los. Por meio da utilização de métricas de avaliação, do acrescimento de uma abordagem de deteção distinta da proposta principal e comparações com outros métodos realizados nesta tese usando dados reais de tráfego de rede, os resultados mostraram boas previsões de tráfego pelo DSNSF e resultados encorajadores quanto a geração de alarmes falsos e precisão de deteção. Com os resultados observados nesta tese, este trabalho de doutoramento busca contribuir para o avanço do estado da arte em métodos e estratégias de deteção de anomalias, visando superar alguns desafios que emergem do constante crescimento em complexidade, velocidade e tamanho das redes de grande porte da atualidade, proporcionando também alta performance. Ainda, a baixa complexidade e agilidade do sistema proposto contribuem para que possa ser aplicado a deteção em tempo real

Deep knowledge transfer for generalization across tasks and domains under data scarcity

Over the last decade, deep learning approaches have achieved tremendous performance in a wide variety of fields, e.g., computer vision and natural language understanding, and across several sectors such as healthcare, industrial manufacturing, and driverless mobility. Most deep learning successes were accomplished in learning scenarios fulfilling the two following requirements. First, large amounts of data are available for training the deep learning model and there are no access restrictions to the data. Second, the data used for training and testing is independent and identically distributed (i.i.d.). However, many real-world applications infringe at least one of the aforementioned requirements, which results in challenging learning problems. The present thesis comprises four contributions to address four such learning problems. In each contribution, we propose a novel method and empirically demonstrate its effectiveness for the corresponding problem setting. The first part addresses the underexplored intersection of the few-shot learning and the one-class classification problems. In this learning scenario, the model has to learn a new task using only a few examples from only the majority class, without overfitting to the few examples or to the majority class. This learning scenario is faced in real-world applications of anomaly detection where data is scarce. We propose an episode sampling technique to adapt meta-learning algorithms designed for class-balanced few-shot classification to the addressed few-shot one-class classification problem. This is done by optimizing for a model initialization tailored for the addressed scenario. In addition, we provide theoretical and empirical analyses to investigate the need for second-order derivatives to learn such parameter initializations. Our experiments on 8 image and time-series datasets, including a real-world dataset of industrial sensor readings, demonstrate the effectiveness of our method. The second part tackles the intersection of the continual learning and the anomaly detection problems, which we are the first to explore, to the best of our knowledge. In this learning scenario, the model is exposed to a stream of anomaly detection tasks, i.e., only examples from the normal class are available, that it has to learn sequentially. Such problem settings are encountered in anomaly detection applications where the data distribution continuously changes. We propose a meta-learning approach that learns parameter-specific initializations and learning rates suitable for continual anomaly detection. Our empirical evaluations show that a model trained with our algorithm is able to learn up 100 anomaly detection tasks sequentially with minimal catastrophic forgetting and overfitting to the majority class. In the third part, we address the domain generalization problem, in which a model trained on several source domains is expected to generalize well to data from a previously unseen target domain, without any modification or exposure to its data. This challenging learning scenario is present in applications involving domain shift, e.g., different clinical centers using different MRI scanners or data acquisition protocols. We assume that learning to extract a richer set of features improves the transfer to a wider set of unknown domains. Motivated by this, we propose an algorithm that identifies the already learned features and corrupts them, hence enforcing new feature discovery. We leverage methods from the explainable machine learning literature to identify the features, and apply the targeted corruption on multiple representation levels, including input data and high-level embeddings. Our extensive empirical evaluation shows that our approach outperforms 18 domain generalization algorithms on multiple benchmark datasets. The last part of the thesis addresses the intersection of domain generalization and data-free learning methods, which we are the first to explore, to the best of our knowledge. Hereby, we address the learning scenario where a model robust to domain shift is needed and only models trained on the same task but different domains are available instead of the original datasets. This learning scenario is relevant for any domain generalization application where the access to the data of the source domains is restricted, e.g., due to concerns about data privacy concerns or intellectual property infringement. We develop an approach that extracts and fuses domain-specific knowledge from the available teacher models into a student model robust to domain shift, by generating synthetic cross-domain data. Our empirical evaluation demonstrates the effectiveness of our method which outperforms ensemble and data-free knowledge distillation baselines. Most importantly, the proposed approach substantially reduces the gap between the best data-free baseline and the upper-bound baseline that uses the original private data

Using machine learning methods in airline flight data monitoring to generate new operational safety knowledge from existing data

The aim of this work is to investigate the possibility of using machine learning (ML) methods in order to generate novel, safety-relevant knowledge from existing flight data. Airlines routinely generate vast amounts of flight data from routine monitoring, but the concept of extracting safety knowledge from this data is still based on detecting exceedances of expert-defined thresholds. This system is conceptually unable to detect novel occurrences for which no such filters exist. ML techniques are able to close this gap. This paper first reviews the literature to select an appropriate ML method. A form of unsupervised learning called “Local Outlier Probability” is selected. Next, an appropriate feature space is developed and implemented in the flight data monitoring system of a supporting airline to generate the dataset. This dataset is cleaned and the outlier calculation performed. The results are statistically analysed. Furthermore, the top outliers are reviewed by the airline’s review pilots in the same way as the traditional exceedance events. Last, the severities and safety relevance of both types of events are compared. This work successfully shows that the chosen approach is able to reduce the number of undetected safety-relevant occurrences by finding novel occurrence types which were undetected by a contemporary and mature flight data monitoring system. This research builds on recent literature by developing a novel method which can be scaled to work in an airline production environment with large datasets, as demonstrated by the efficient analysis of 1.2 million flights

Machine learning methods for the characterization and classification of complex data

This thesis work presents novel methods for the analysis and classification of medical images and, more generally, complex data. First, an unsupervised machine learning method is proposed to order anterior chamber OCT (Optical Coherence Tomography) images according to a patient's risk of developing angle-closure glaucoma. In a second study, two outlier finding techniques are proposed to improve the results of above mentioned machine learning algorithm, we also show that they are applicable to a wide variety of data, including fraud detection in credit card transactions. In a third study, the topology of the vascular network of the retina, considering it a complex tree-like network is analyzed and we show that structural differences reveal the presence of glaucoma and diabetic retinopathy. In a fourth study we use a model of a laser with optical injection that presents extreme events in its intensity time-series to evaluate machine learning methods to forecast such extreme events.El presente trabajo de tesis desarrolla nuevos métodos para el análisis y clasificación de imágenes médicas y datos complejos en general. Primero, proponemos un método de aprendizaje automático sin supervisión que ordena imágenes OCT (tomografía de coherencia óptica) de la cámara anterior del ojo en función del grado de riesgo del paciente de padecer glaucoma de ángulo cerrado. Luego, desarrollamos dos métodos de detección automática de anomalías que utilizamos para mejorar los resultados del algoritmo anterior, pero que su aplicabilidad va mucho más allá, siendo útil, incluso, para la detección automática de fraudes en transacciones de tarjetas de crédito. Mostramos también, cómo al analizar la topología de la red vascular de la retina considerándola una red compleja, podemos detectar la presencia de glaucoma y de retinopatía diabética a través de diferencias estructurales. Estudiamos también un modelo de un láser con inyección óptica que presenta eventos extremos en la serie temporal de intensidad para evaluar diferentes métodos de aprendizaje automático para predecir dichos eventos extremos.Aquesta tesi desenvolupa nous mètodes per a l’anàlisi i la classificació d’imatges mèdiques i dades complexes. Hem proposat, primer, un mètode d’aprenentatge automàtic sense supervisió que ordena imatges OCT (tomografia de coherència òptica) de la cambra anterior de l’ull en funció del grau de risc del pacient de patir glaucoma d’angle tancat. Després, hem desenvolupat dos mètodes de detecció automàtica d’anomalies que hem utilitzat per millorar els resultats de l’algoritme anterior, però que la seva aplicabilitat va molt més enllà, sent útil, fins i tot, per a la detecció automàtica de fraus en transaccions de targetes de crèdit. Mostrem també, com en analitzar la topologia de la xarxa vascular de la retina considerant-la una xarxa complexa, podem detectar la presència de glaucoma i de retinopatia diabètica a través de diferències estructurals. Finalment, hem estudiat un làser amb injecció òptica, el qual presenta esdeveniments extrems en la sèrie temporal d’intensitat. Hem avaluat diferents mètodes per tal de predir-los.Postprint (published version

D5.1 SHM digital twin requirements for residential, industrial buildings and bridges

This deliverable presents a report of the needs for structural control on buildings (initial imperfections, deflections at service, stability, rheology) and on bridges (vibrations, modal shapes, deflections, stresses) based on state-of-the-art image-based and sensor-based techniques. To this end, the deliverable identifies and describes strategies that encompass state-of-the-art instrumentation and control for infrastructures (SHM technologies).Objectius de Desenvolupament Sostenible::8 - Treball Decent i Creixement EconòmicObjectius de Desenvolupament Sostenible::9 - Indústria, Innovació i InfraestructuraPreprin

Semantics-aware image understanding

L'abstract è presente nell'allegato / the abstract is in the attachmen

Deep Learning-based Solutions to Improve Diagnosis in Wireless Capsule Endoscopy

[eng] Deep Learning (DL) models have gained extensive attention due to their remarkable performance in a wide range of real-world applications, particularly in computer vision. This achievement, combined with the increase in available medical records, has made it possible to open up new opportunities for analyzing and interpreting healthcare data. This symbiotic relationship can enhance the diagnostic process by identifying abnormalities, patterns, and trends, resulting in more precise, personalized, and effective healthcare for patients. Wireless Capsule Endoscopy (WCE) is a non-invasive medical imaging technique used to visualize the entire Gastrointestinal (GI) tract. Up to this moment, physicians meticulously review the captured frames to identify pathologies and diagnose patients. This manual process is time- consuming and prone to errors due to the challenges of interpreting the complex nature of WCE procedures. Thus, it demands a high level of attention, expertise, and experience. To overcome these drawbacks, shorten the screening process, and improve the diagnosis, efficient and accurate DL methods are required. This thesis proposes DL solutions to the following problems encountered in the analysis of WCE studies: pathology detection, anatomical landmark identification, and Out-of-Distribution (OOD) sample handling. These solutions aim to achieve robust systems that minimize the duration of the video analysis and reduce the number of undetected lesions. Throughout their development, several DL drawbacks have appeared, including small and imbalanced datasets. These limitations have also been addressed, ensuring that they do not hinder the generalization of neural networks, leading to suboptimal performance and overfitting. To address the previous WCE problems and overcome the DL challenges, the proposed systems adopt various strategies that utilize the power advantage of Triplet Loss (TL) and Self-Supervised Learning (SSL) techniques. Mainly, TL has been used to improve the generalization of the models, while SSL methods have been employed to leverage the unlabeled data to obtain useful representations. The presented methods achieve State-of-the-art results in the aforementioned medical problems and contribute to the ongoing research to improve the diagnostic of WCE studies.[cat] Els models d’aprenentatge profund (AP) han acaparat molta atenció a causa del seu rendiment en una àmplia gamma d'aplicacions del món real, especialment en visió per ordinador. Aquest fet, combinat amb l'increment de registres mèdics disponibles, ha permès obrir noves oportunitats per analitzar i interpretar les dades sanitàries. Aquesta relació simbiòtica pot millorar el procés de diagnòstic identificant anomalies, patrons i tendències, amb la conseqüent obtenció de diagnòstics sanitaris més precisos, personalitzats i eficients per als pacients. La Capsula endoscòpica (WCE) és una tècnica d'imatge mèdica no invasiva utilitzada per visualitzar tot el tracte gastrointestinal (GI). Fins ara, els metges revisen minuciosament els fotogrames capturats per identificar patologies i diagnosticar pacients. Aquest procés manual requereix temps i és propens a errors. Per tant, exigeix un alt nivell d'atenció, experiència i especialització. Per superar aquests inconvenients, reduir la durada del procés de detecció i millorar el diagnòstic, es requereixen mètodes eficients i precisos d’AP. Aquesta tesi proposa solucions que utilitzen AP per als següents problemes trobats en l'anàlisi dels estudis de WCE: detecció de patologies, identificació de punts de referència anatòmics i gestió de mostres que pertanyen fora del domini. Aquestes solucions tenen com a objectiu aconseguir sistemes robustos que minimitzin la durada de l'anàlisi del vídeo i redueixin el nombre de lesions no detectades. Durant el seu desenvolupament, han sorgit diversos inconvenients relacionats amb l’AP, com ara conjunts de dades petits i desequilibrats. Aquestes limitacions també s'han abordat per assegurar que no obstaculitzin la generalització de les xarxes neuronals, evitant un rendiment subòptim. Per abordar els problemes anteriors de WCE i superar els reptes d’AP, els sistemes proposats adopten diverses estratègies que aprofiten l'avantatge de la Triplet Loss (TL) i les tècniques d’auto-aprenentatge. Principalment, s'ha utilitzat TL per millorar la generalització dels models, mentre que els mètodes d’autoaprenentatge s'han emprat per aprofitar les dades sense etiquetar i obtenir representacions útils. Els mètodes presentats aconsegueixen bons resultats en els problemes mèdics esmentats i contribueixen a la investigació en curs per millorar el diagnòstic dels estudis de WCE