Data input for scientific visualization

Since the development of the modular visualization environment, the users of such gen­eral software have had to face the problems of file input Simply put, the range and complexity of different file formats has prevented the developers of visualization systems from creating an individual solution for every format. This has left a gap, where users are left to fend for themselves by either extending the system to their needs, or using a format capable of being described by one of the input tools offered by such systems. Neither of these options is particularly easy, and the use of field dependent terminology can hamper such efforts.This thesis proposes a model, architecture and methodology, for importing uncommon file formats and data into scientific visualization systems by way of interpretation. Using interpretation we are able to describe many file formats in a general manner, enabling further development of simple methods to aid users in solving their data input problems. The utility of these concepts is illustrated through the Interactive File Input Toolkit (IFIT), which allows users to solve their file input problems in a flexible manner. This tool is illustrated by a range of examples and test cases, and unlike other solutions it has the ability to discover as well as describe the content of a file. Finally, this thesis presents work towards an automatic method for determining a file’s input parameters

Geographically Referenced Data for Social Science

An estimated 80% of all information has a spatial reference. Information about households as well as environmental data can be linked to precise locations in the real world. This offers benefits for combining different datasets via the spatial location and, furthermore, spatial indicators such as distance and accessibility can be included in analyses and models. HSpatial patterns of real-world social phenomena can be identified and described and possible interrelationships between datasets can be studied. Michael F. GOODCHILD, a Professor of Geography at the University of California, Santa Barbara and principal investigator at the Center for Spatially Integrated Social Science (CSISS), summarizes the growing significance of space, spatiality, location, and place in social science research as follows: "(...) for many social scientists, location is just another attribute in a table and not a very important one at that. After all, the processes that lead to social deprivation, crime, or family dysfunction are more or less the same everywhere, and, in the minds of social scientists, many other variables, such as education, unemployment, or age, are far more interesting as explanatory factors of social phenomena than geographic location. Geographers have been almost alone among social scientists in their concern for space; to economists, sociologists, political scientists, demographers, and anthropologists, space has been a minor issue and one that these disciplines have often been happy to leave to geographers. But that situation is changing, and many social scientists have begun to talk about a "spatial turn," a new interest in location, and a new "spatial social science" that crosses the traditional boundaries between disciplines. Interest is rising in GIS (Geographic Information Systems) and in what GIS makes possible: mapping, spatial analysis, and spatial modelling. At the same time, new tools are becoming available that give GIS users access to some of the big ideas of social science."

Steered mixture-of-experts for light field images and video : representation and coding

Research in light field (LF) processing has heavily increased over the last decade. This is largely driven by the desire to achieve the same level of immersion and navigational freedom for camera-captured scenes as it is currently available for CGI content. Standardization organizations such as MPEG and JPEG continue to follow conventional coding paradigms in which viewpoints are discretely represented on 2-D regular grids. These grids are then further decorrelated through hybrid DPCM/transform techniques. However, these 2-D regular grids are less suited for high-dimensional data, such as LFs. We propose a novel coding framework for higher-dimensional image modalities, called Steered Mixture-of-Experts (SMoE). Coherent areas in the higher-dimensional space are represented by single higher-dimensional entities, called kernels. These kernels hold spatially localized information about light rays at any angle arriving at a certain region. The global model consists thus of a set of kernels which define a continuous approximation of the underlying plenoptic function. We introduce the theory of SMoE and illustrate its application for 2-D images, 4-D LF images, and 5-D LF video. We also propose an efficient coding strategy to convert the model parameters into a bitstream. Even without provisions for high-frequency information, the proposed method performs comparable to the state of the art for low-to-mid range bitrates with respect to subjective visual quality of 4-D LF images. In case of 5-D LF video, we observe superior decorrelation and coding performance with coding gains of a factor of 4x in bitrate for the same quality. At least equally important is the fact that our method inherently has desired functionality for LF rendering which is lacking in other state-of-the-art techniques: (1) full zero-delay random access, (2) light-weight pixel-parallel view reconstruction, and (3) intrinsic view interpolation and super-resolution

EcoGIS – GIS tools for ecosystem approaches to fisheries management

Executive Summary: The EcoGIS project was launched in September 2004 to investigate how Geographic Information Systems (GIS), marine data, and custom analysis tools can better enable fisheries scientists and managers to adopt Ecosystem Approaches to Fisheries Management (EAFM). EcoGIS is a collaborative effort between NOAA’s National Ocean Service (NOS) and National Marine Fisheries Service (NMFS), and four regional Fishery Management Councils. The project has focused on four priority areas: Fishing Catch and Effort Analysis, Area Characterization, Bycatch Analysis, and Habitat Interactions. Of these four functional areas, the project team first focused on developing a working prototype for catch and effort analysis: the Fishery Mapper Tool. This ArcGIS extension creates time-and-area summarized maps of fishing catch and effort from logbook, observer, or fishery-independent survey data sets. Source data may come from Oracle, Microsoft Access, or other file formats. Feedback from beta-testers of the Fishery Mapper was used to debug the prototype, enhance performance, and add features. This report describes the four priority functional areas, the development of the Fishery Mapper tool, and several themes that emerged through the parallel evolution of the EcoGIS project, the concept and implementation of the broader field of Ecosystem Approaches to Management (EAM), data management practices, and other EAM toolsets. In addition, a set of six succinct recommendations are proposed on page 29. One major conclusion from this work is that there is no single “super-tool” to enable Ecosystem Approaches to Management; as such, tools should be developed for specific purposes with attention given to interoperability and automation. Future work should be coordinated with other GIS development projects in order to provide “value added” and minimize duplication of efforts. In addition to custom tools, the development of cross-cutting Regional Ecosystem Spatial Databases will enable access to quality data to support the analyses required by EAM. GIS tools will be useful in developing Integrated Ecosystem Assessments (IEAs) and providing pre- and post-processing capabilities for spatially-explicit ecosystem models. Continued funding will enable the EcoGIS project to develop GIS tools that are immediately applicable to today’s needs. These tools will enable simplified and efficient data query, the ability to visualize data over time, and ways to synthesize multidimensional data from diverse sources. These capabilities will provide new information for analyzing issues from an ecosystem perspective, which will ultimately result in better understanding of fisheries and better support for decision-making. (PDF file contains 45 pages.

Level set and PDE methods for visualization

Notes from IEEE Visualization 2005 Course #6, Minneapolis, MN, October 25, 2005. Retrieved 3/16/2006 from http://www.cs.drexel.edu/~david/Papers/Viz05_Course6_Notes.pdf.Level set methods, an important class of partial differential equation (PDE) methods, define dynamic surfaces implicitly as the level set (isosurface) of a sampled, evolving nD function. This course is targeted for researchers interested in learning about level set and other PDE-based methods, and their application to visualization. The course material will be presented by several of the recognized experts in the field, and will include introductory concepts, practical considerations and extensive details on a variety of level set/PDE applications. The course will begin with preparatory material that introduces the concept of using partial differential equations to solve problems in visualization. This will include the structure and behavior of several different types of differential equations, e.g. the level set, heat and reaction-diffusion equations, as well as a general approach to developing PDE-based applications. The second stage of the course will describe the numerical methods and algorithms needed to implement the mathematics and methods presented in the first stage, including information on implementing the algorithms on GPUs. Throughout the course the technical material will be tied to applications, e.g. image processing, geometric modeling, dataset segmentation, model processing, surface reconstruction, anisotropic geometric diffusion, flow field post-processing and vector visualization. Prerequisites: Knowledge of calculus, linear algebra, computer graphics, visualization, geometric modeling and computer vision. Some familiarity with differential geometry, differential equations, numerical computing and image processing is strongly recommended, but not required

Interactive archives of scientific data

A focus on qualitative methods of presenting data shows that visualization provides a mechanism for browsing independent of the source of data and is an effective alternative to traditional image-based browsing of image data. To be generally applicable, such visualization methods, however, must be based upon an underlying data model with support for a broad class of data types and structures. Interactive, near-real-time browsing for data sets of interesting size today requires a browse server of considerable power. A symmetric multi-processor with very high internal and external bandwidth demonstrates the feasibility of this concept. Although this technology is likely to be available on the desktop within a few years, the increase in the size and complexity of achieved data will continue to exceed the capacity of 'worksation' systems. Hence, a higher class of performance, especially in bandwidth, will generally be required for on-demand browsing. A few experiments with differing digital compression techniques indicates that a MPEG-1 implementation within the context of a high-performance browse server (i.e., parallized) is a practical method of converting a browse product to a form suitable for network or CD-ROM distribution