GENERATING KNOWLEDGE STRUCTURES FROM OPEN DATASETS' TAGS - AN APPROACH BASED ON FORMAL CONCEPT ANALYSIS

Under influence of data transparency initiatives, a variety of institutions have published a significant number of datasets. In most cases, data publishers take advantage of open data portals (ODPs) for making their datasets publicly available. To improve the datasets' discoverability, open data portals (ODPs) group open datasets into categories using various criteria like publishers, institutions, formats, and descriptions. For these purposes, portals take advantage of metadata accompanying datasets. However, a part of metadata may be missing, or may be incomplete or redundant. Each of these situations makes it difficult for users to find appropriate datasets and obtain the desired information. As the number of available datasets grows, this problem becomes easy to notice. This paper is focused on the first step towards decreasing this problem by implementing knowledge structures to be used in situations where a part of datasets' metadata is missing. In particular, we focus on developing knowledge structures capable of suggesting the best match for the category where an uncategorized dataset should belong to. Our approach relies on dataset descriptions provided by users within dataset tags. We take advantage of a formal concept analysis to reveal the shared conceptualization originating from the tags' usage by developing a concept lattice per each category of open datasets. Since tags represent free text metadata entered by users, in this paper we will present a method of optimizing their usage through means of semantic similarity measures based on natural language processing mechanisms. Finally, we will demonstrate the advantage of our proposal by comparing concept lattices generated using formal the concept analysis before and after the optimization process. The main experimental research results will show that our approach is capable of reducing the number of nodes within a lattice more than 40%

An analytical framework to nowcast well-being using mobile phone data

An intriguing open question is whether measurements made on Big Data recording human activities can yield us high-fidelity proxies of socio-economic development and well-being. Can we monitor and predict the socio-economic development of a territory just by observing the behavior of its inhabitants through the lens of Big Data? In this paper, we design a data-driven analytical framework that uses mobility measures and social measures extracted from mobile phone data to estimate indicators for socio-economic development and well-being. We discover that the diversity of mobility, defined in terms of entropy of the individual users' trajectories, exhibits (i) significant correlation with two different socio-economic indicators and (ii) the highest importance in predictive models built to predict the socio-economic indicators. Our analytical framework opens an interesting perspective to study human behavior through the lens of Big Data by means of new statistical indicators that quantify and possibly "nowcast" the well-being and the socio-economic development of a territory

Multi-tier framework for the inferential measurement and data-driven modeling

A framework for the inferential measurement and data-driven modeling has been proposed and assessed in several real-world application domains. The architecture of the framework has been structured in multiple tiers to facilitate extensibility and the integration of new components. Each of the proposed four tiers has been assessed in an uncoupled way to verify their suitability. The first tier, dealing with exploratory data analysis, has been assessed with the characterization of the chemical space related to the biodegradation of organic chemicals. This analysis has established relationships between physicochemical variables and biodegradation rates that have been used for model development. At the preprocessing level, a novel method for feature selection based on dissimilarity measures between Self-Organizing maps (SOM) has been developed and assessed. The proposed method selected more features than others published in literature but leads to models with improved predictive power. Single and multiple data imputation techniques based on the SOM have also been used to recover missing data in a Waste Water Treatment Plant benchmark. A new dynamic method to adjust the centers and widths of in Radial basis Function networks has been proposed to predict water quality. The proposed method outperformed other neural networks. The proposed modeling components have also been assessed in the development of prediction and classification models for biodegradation rates in different media. The results obtained proved the suitability of this approach to develop data-driven models when the complex dynamics of the process prevents the formulation of mechanistic models. The use of rule generation algorithms and Bayesian dependency models has been preliminary screened to provide the framework with interpretation capabilities. Preliminary results obtained from the classification of Modes of Toxic Action (MOA) indicate that this could be a promising approach to use MOAs as proxy indicators of human health effects of chemicals.Finally, the complete framework has been applied to three different modeling scenarios. A virtual sensor system, capable of inferring product quality indices from primary process variables has been developed and assessed. The system was integrated with the control system in a real chemical plant outperforming multi-linear correlation models usually adopted by chemical manufacturers. A model to predict carcinogenicity from molecular structure for a set of aromatic compounds has been developed and tested. Results obtained after the application of the SOM-dissimilarity feature selection method yielded better results than models published in the literature. Finally, the framework has been used to facilitate a new approach for environmental modeling and risk management within geographical information systems (GIS). The SOM has been successfully used to characterize exposure scenarios and to provide estimations of missing data through geographic interpolation. The combination of SOM and Gaussian Mixture models facilitated the formulation of a new probabilistic risk assessment approach.Aquesta tesi proposa i avalua en diverses aplicacions reals, un marc general de treball per al desenvolupament de sistemes de mesurament inferencial i de modelat basats en dades. L'arquitectura d'aquest marc de treball s'organitza en diverses capes que faciliten la seva extensibilitat així com la integració de nous components. Cadascun dels quatre nivells en que s'estructura la proposta de marc de treball ha estat avaluat de forma independent per a verificar la seva funcionalitat. El primer que nivell s'ocupa de l'anàlisi exploratòria de dades ha esta avaluat a partir de la caracterització de l'espai químic corresponent a la biodegradació de certs compostos orgànics. Fruit d'aquest anàlisi s'han establert relacions entre diverses variables físico-químiques que han estat emprades posteriorment per al desenvolupament de models de biodegradació. A nivell del preprocés de les dades s'ha desenvolupat i avaluat una nova metodologia per a la selecció de variables basada en l'ús del Mapes Autoorganitzats (SOM). Tot i que el mètode proposat selecciona, en general, un major nombre de variables que altres mètodes proposats a la literatura, els models resultants mostren una millor capacitat predictiva. S'han avaluat també tot un conjunt de tècniques d'imputació de dades basades en el SOM amb un conjunt de dades estàndard corresponent als paràmetres d'operació d'una planta de tractament d'aigües residuals. Es proposa i avalua en un problema de predicció de qualitat en aigua un nou model dinàmic per a ajustar el centre i la dispersió en xarxes de funcions de base radial. El mètode proposat millora els resultats obtinguts amb altres arquitectures neuronals. Els components de modelat proposat s'han aplicat també al desenvolupament de models predictius i de classificació de les velocitats de biodegradació de compostos orgànics en diferents medis. Els resultats obtinguts demostren la viabilitat d'aquesta aproximació per a desenvolupar models basats en dades en aquells casos en els que la complexitat de dinàmica del procés impedeix formular models mecanicistes. S'ha dut a terme un estudi preliminar de l'ús de algorismes de generació de regles i de grafs de dependència bayesiana per a introduir una nova capa que faciliti la interpretació dels models. Els resultats preliminars obtinguts a partir de la classificació dels Modes d'acció Tòxica (MOA) apunten a que l'ús dels MOA com a indicadors intermediaris dels efectes dels compostos químics en la salut és una aproximació factible.Finalment, el marc de treball proposat s'ha aplicat en tres escenaris de modelat diferents. En primer lloc, s'ha desenvolupat i avaluat un sensor virtual capaç d'inferir índexs de qualitat a partir de variables primàries de procés. El sensor resultant ha estat implementat en una planta química real millorant els resultats de les correlacions multilineals emprades habitualment. S'ha desenvolupat i avaluat un model per a predir els efectes carcinògens d'un grup de compostos aromàtics a partir de la seva estructura molecular. Els resultats obtinguts desprès d'aplicar el mètode de selecció de variables basat en el SOM milloren els resultats prèviament publicats. Aquest marc de treball s'ha usat també per a proporcionar una nova aproximació al modelat ambiental i l'anàlisi de risc amb sistemes d'informació geogràfica (GIS). S'ha usat el SOM per a caracteritzar escenaris d'exposició i per a desenvolupar un nou mètode d'interpolació geogràfica. La combinació del SOM amb els models de mescla de gaussianes dona una nova formulació al problema de l'anàlisi de risc des d'un punt de vista probabilístic

LEARNFCA: A FUZZY FCA AND PROBABILITY BASED APPROACH FOR LEARNING AND CLASSIFICATION

Formal concept analysis(FCA) is a mathematical theory based on lattice and order theory used for data analysis and knowledge representation. Over the past several years, many of its extensions have been proposed and applied in several domains including data mining, machine learning, knowledge management, semantic web, software development, chemistry ,biology, medicine, data analytics, biology and ontology engineering. This thesis reviews the state-of-the-art of theory of Formal Concept Analysis(FCA) and its various extensions that have been developed and well-studied in the past several years. We discuss their historical roots, reproduce the original definitions and derivations with illustrative examples. Further, we provide a literature review of it’s applications and various approaches adopted by researchers in the areas of dataanalysis, knowledge management with emphasis to data-learning and classification problems. We propose LearnFCA, a novel approach based on FuzzyFCA and probability theory for learning and classification problems. LearnFCA uses an enhanced version of FuzzyLattice which has been developed to store class labels and probability vectors and has the capability to be used for classifying instances with encoded and unlabelled features. We evaluate LearnFCA on encodings from three datasets - mnist, omniglot and cancer images with interesting results and varying degrees of success. Adviser: Jitender Deogu

On data integration workflows for an effective management of multidimensional petroleum digital ecosystems in Arabian Gulf Basins

Data integration of multiple heterogeneous datasets from multidimensional petroleum digital ecosystems is an effective way, for extracting information and adding value to knowledge domain from multiple producing onshore and offshore basins. At present, data from multiple basins are scattered and unusable for data integration, because of scale and format differences. Ontology based warehousing and mining modeling are recommended for resolving the issues of scaling and formatting of multidimensional datasets, in which case, seismic and well-domain datasets are described. Issues, such as semantics among different data dimensions and their associated attributes are also addressed by Ontology modeling.Intelligent relationships are built among several petroleum system domains (structure, reservoir, source and seal, for example) at global scale and facilitated the integration process among multiple dimensions in a data warehouse environment. For this purpose, integrated workflows are designed for capturing and modeling unknown relationships among petroleum system data attributes in interpretable knowledge domains.This study is an effective approach in mining and interpreting data views drawn from warehoused exploration and production metadata, with special reference to Arabian onshore and offshore basins

LearnFCA: A Fuzzy FCA and Probability Based Approach for Learning and Classification

Formal concept analysis(FCA) is a mathematical theory based on lattice and order theory used for data analysis and knowledge representation. Over the past several years, many of its extensions have been proposed and applied in several domains including data mining, machine learning, knowledge management, semantic web, software development, chemistry ,biology, medicine, data analytics, biology and ontology engineering. This thesis reviews the state-of-the-art of theory of Formal Concept Analysis(FCA) and its various extensions that have been developed and well-studied in the past several years. We discuss their historical roots, reproduce the original definitions and derivations with illustrative examples. Further, we provide a literature review of it’s applications and various approaches adopted by researchers in the areas of dataanalysis, knowledge management with emphasis to data-learning and classification problems. We propose LearnFCA, a novel approach based on FuzzyFCA and probability theory for learning and classification problems. LearnFCA uses an enhanced version of FuzzyLattice which has been developed to store class labels and probability vectors and has the capability to be used for classifying instances with encoded and unlabelled features. We evaluate LearnFCA on encodings from three datasets - mnist, omniglot and cancer images with interesting results and varying degrees of success. Adviser: Dr Jitender Deogu

Machine Learning Approaches for Natural Resource Data

Abstract Real life applications involving efficient management of natural resources are dependent on accurate geographical information. This information is usually obtained by manual on-site data collection, via automatic remote sensing methods, or by the mixture of the two. Natural resource management, besides accurate data collection, also requires detailed analysis of this data, which in the era of data flood can be a cumbersome process. With the rising trend in both computational power and storage capacity, together with lowering hardware prices, data-driven decision analysis has an ever greater role. In this thesis, we examine the predictability of terrain trafficability conditions and forest attributes by using a machine learning approach with geographic information system data. Quantitative measures on the prediction performance of terrain conditions using natural resource data sets are given through five distinct research areas located around Finland. Furthermore, the estimation capability of key forest attributes is inspected with a multitude of modeling and feature selection techniques. The research results provide empirical evidence on whether the used natural resource data is sufficiently accurate enough for practical applications, or if further refinement on the data is needed. The results are important especially to forest industry since even slight improvements to the natural resource data sets utilized in practice can result in high saves in terms of operation time and costs. Model evaluation is also addressed in this thesis by proposing a novel method for estimating the prediction performance of spatial models. Classical model goodness of fit measures usually rely on the assumption of independently and identically distributed data samples, a characteristic which normally is not true in the case of spatial data sets. Spatio-temporal data sets contain an intrinsic property called spatial autocorrelation, which is partly responsible for breaking these assumptions. The proposed cross validation based evaluation method provides model performance estimation where optimistic bias due to spatial autocorrelation is decreased by partitioning the data sets in a suitable way. Keywords: Open natural resource data, machine learning, model evaluationTiivistelmä Käytännön sovellukset, joihin sisältyy luonnonvarojen hallintaa ovat riippuvaisia tarkasta paikkatietoaineistosta. Tämä paikkatietoaineisto kerätään usein manuaalisesti paikan päällä, automaattisilla kaukokartoitusmenetelmillä tai kahden edellisen yhdistelmällä. Luonnonvarojen hallinta vaatii tarkan aineiston keräämisen lisäksi myös sen yksityiskohtaisen analysoinnin, joka tietotulvan aikakautena voi olla vaativa prosessi. Nousevan laskentatehon, tallennustilan sekä alenevien laitteistohintojen myötä datapohjainen päätöksenteko on yhä suuremmassa roolissa. Tämä väitöskirja tutkii maaston kuljettavuuden ja metsäpiirteiden ennustettavuutta käyttäen koneoppimismenetelmiä paikkatietoaineistojen kanssa. Maaston kuljettavuuden ennustamista mitataan kvantitatiivisesti käyttäen kaukokartoitusaineistoa viideltä eri tutkimusalueelta ympäri Suomea. Tarkastelemme lisäksi tärkeimpien metsäpiirteiden ennustettavuutta monilla eri mallintamistekniikoilla ja piirteiden valinnalla. Väitöstyön tulokset tarjoavat empiiristä todistusaineistoa siitä, onko käytetty luonnonvaraaineisto riittävän laadukas käytettäväksi käytännön sovelluksissa vai ei. Tutkimustulokset ovat tärkeitä erityisesti metsäteollisuudelle, koska pienetkin parannukset luonnonvara-aineistoihin käytännön sovelluksissa voivat johtaa suuriin säästöihin niin operaatioiden ajankäyttöön kuin kuluihin. Tässä työssä otetaan kantaa myös mallin evaluointiin esittämällä uuden menetelmän spatiaalisten mallien ennustuskyvyn estimointiin. Klassiset mallinvalintakriteerit nojaavat yleensä riippumattomien ja identtisesti jakautuneiden datanäytteiden oletukseen, joka ei useimmiten pidä paikkaansa spatiaalisilla datajoukoilla. Spatio-temporaaliset datajoukot sisältävät luontaisen ominaisuuden, jota kutsutaan spatiaaliseksi autokorrelaatioksi. Tämä ominaisuus on osittain vastuussa näiden oletusten rikkomisesta. Esitetty ristiinvalidointiin perustuva evaluointimenetelmä tarjoaa mallin ennustuskyvyn mitan, missä spatiaalisen autokorrelaation vaikutusta vähennetään jakamalla datajoukot sopivalla tavalla. Avainsanat: Avoin luonnonvara-aineisto, koneoppiminen, mallin evaluoint

Breaking Free with AI: The Deconfinement Transition

Employing supervised machine learning techniques, we investigate the deconfinement phase transition within $4$-dimensional $SU(2)$ Yang-Mills (YM) theory, compactified on a small circle and endowed with center-stabilizing potential. This exploration encompasses scenarios both without and with matter in either the fundamental or adjoint representations. Central to our study is a profound duality relationship, intricately mapping the YM theory onto an XY-spin model with $\mathbb Z_p$-preserving perturbations. The parameter $p$ embodies the essence of the matter representation, with values of $p=1$ and $p=4$ for fundamental and adjoint representations, respectively, while $p=2$ corresponds to pure YM theory. The logistic regression method struggles to produce satisfactory results, particularly in predicting the transition temperature. Contrarily, convolutional neural networks (CNNs) exhibit remarkable prowess, effectively foreseeing critical temperatures in cases where $p=2$ and $p=4$. Furthermore, by harnessing CNNs, we compute critical exponents at the transition, aligning favorably with computations grounded in conventional order parameters. Taking our investigation a step further, we use CNNs to lend meaning to phases within YM theory with fundamental matter. Notably, this theory lacks conventional order parameters. Interestingly, CNNs manage to predict a transition temperature in this context. However, the fragility of this prediction under variations in the boundaries of the training window undermines its utility as a robust order parameter. This outcome underscores the constraints inherent in employing supervised machine learning techniques as innovative substitutes for traditional order parameters.Comment: 12 pages, 8 figure

A study of the methodologies currently available for the maintenance of the knowledge-base in an expert system

This research studies currently available maintenance methodologies for expert system knowledge bases and taxonomically classifies them according to the functions they perform. The classification falls into two broad categories. These are: (1) Methodologies for building a more maintainable expert system knowledge base. This section covers techniques applicable to the development phases. Software engineering approaches as well as other approaches are discussed. (2) Methodologies for maintaining an existing knowledge base. This section is concerned with the continued maintenance of an existing knowledge base. It is divided into three subsections. The first subsection discusses tools and techniques which aid the understanding of a knowledge base. The second looks at tools which facilitate the actual modification of the knowledge base, while the last secttion examines tools used for the verification or validation of the knowledge base. Every main methodology or tool selected for this study is analysed according to the function it was designed to perform (or its objective); the concept or principles behind the tool or methodology: and its implementation details. This is followed by a general comment at the end of the analysis. Although expert systems as a rule contain significant amount of information related to the user interface, database interface, integration with conventional software for numerical calculations, integration with other knowledge bases through black boarding systems or network interactions, this research is confined to the maintenance of the knowledge base only and does not address the maintenance of these interfaces. Also not included in this thesis are Truth Maintenance Systems. While a Truth Maintenance System (TMS) automatically updates a knowledge base during execution time, these update operations are not considered \u27maintenance\u27 in the sense as used in this thesis. Maintenance in the context of this thesis refers to perfective, adaptive, and corrective maintenance (see introduction to chapter 4). TMS on the other hand refers to a collection of techniques for doing belief revision (Martin, 1990) . That is, a TMS maintains a set of beliefs or facts in the knowledge base to ensure that they remain consistent during execution time. From this perspective, TMS is not regarded as a knowledge base maintenance tool for the purpose of this study