49,562 research outputs found
A probability programming language: Development and applications
A probability programming language is developed and presented; applications illustrate its use. Algorithms and generalized theorems used in probability are encapsulated into a programming environment with the computer algebra system Maple to provide the applied community with automated probability capabilities. Algorithms of procedures are presented and explained, including detailed presentations on three of the most significant procedures. Applications that encompass a wide range of applied topics including goodness-of-fit testing, probabilistic modeling, central limit theorem augmentation, generation of mathematical resources, and estimation are presented
BlenX-based compositional modeling of complex reaction mechanisms
Molecular interactions are wired in a fascinating way resulting in complex
behavior of biological systems. Theoretical modeling provides a useful
framework for understanding the dynamics and the function of such networks. The
complexity of the biological networks calls for conceptual tools that manage
the combinatorial explosion of the set of possible interactions. A suitable
conceptual tool to attack complexity is compositionality, already successfully
used in the process algebra field to model computer systems. We rely on the
BlenX programming language, originated by the beta-binders process calculus, to
specify and simulate high-level descriptions of biological circuits. The
Gillespie's stochastic framework of BlenX requires the decomposition of
phenomenological functions into basic elementary reactions. Systematic
unpacking of complex reaction mechanisms into BlenX templates is shown in this
study. The estimation/derivation of missing parameters and the challenges
emerging from compositional model building in stochastic process algebras are
discussed. A biological example on circadian clock is presented as a case study
of BlenX compositionality
Category Theory and Model-Driven Engineering: From Formal Semantics to Design Patterns and Beyond
There is a hidden intrigue in the title. CT is one of the most abstract
mathematical disciplines, sometimes nicknamed "abstract nonsense". MDE is a
recent trend in software development, industrially supported by standards,
tools, and the status of a new "silver bullet". Surprisingly, categorical
patterns turn out to be directly applicable to mathematical modeling of
structures appearing in everyday MDE practice. Model merging, transformation,
synchronization, and other important model management scenarios can be seen as
executions of categorical specifications.
Moreover, the paper aims to elucidate a claim that relationships between CT
and MDE are more complex and richer than is normally assumed for "applied
mathematics". CT provides a toolbox of design patterns and structural
principles of real practical value for MDE. We will present examples of how an
elementary categorical arrangement of a model management scenario reveals
deficiencies in the architecture of modern tools automating the scenario.Comment: In Proceedings ACCAT 2012, arXiv:1208.430
Curriculum Guidelines for Undergraduate Programs in Data Science
The Park City Math Institute (PCMI) 2016 Summer Undergraduate Faculty Program
met for the purpose of composing guidelines for undergraduate programs in Data
Science. The group consisted of 25 undergraduate faculty from a variety of
institutions in the U.S., primarily from the disciplines of mathematics,
statistics and computer science. These guidelines are meant to provide some
structure for institutions planning for or revising a major in Data Science
Applying Formal Methods to Networking: Theory, Techniques and Applications
Despite its great importance, modern network infrastructure is remarkable for
the lack of rigor in its engineering. The Internet which began as a research
experiment was never designed to handle the users and applications it hosts
today. The lack of formalization of the Internet architecture meant limited
abstractions and modularity, especially for the control and management planes,
thus requiring for every new need a new protocol built from scratch. This led
to an unwieldy ossified Internet architecture resistant to any attempts at
formal verification, and an Internet culture where expediency and pragmatism
are favored over formal correctness. Fortunately, recent work in the space of
clean slate Internet design---especially, the software defined networking (SDN)
paradigm---offers the Internet community another chance to develop the right
kind of architecture and abstractions. This has also led to a great resurgence
in interest of applying formal methods to specification, verification, and
synthesis of networking protocols and applications. In this paper, we present a
self-contained tutorial of the formidable amount of work that has been done in
formal methods, and present a survey of its applications to networking.Comment: 30 pages, submitted to IEEE Communications Surveys and Tutorial
Issues about the Adoption of Formal Methods for Dependable Composition of Web Services
Web Services provide interoperable mechanisms for describing, locating and
invoking services over the Internet; composition further enables to build
complex services out of simpler ones for complex B2B applications. While
current studies on these topics are mostly focused - from the technical
viewpoint - on standards and protocols, this paper investigates the adoption of
formal methods, especially for composition. We logically classify and analyze
three different (but interconnected) kinds of important issues towards this
goal, namely foundations, verification and extensions. The aim of this work is
to individuate the proper questions on the adoption of formal methods for
dependable composition of Web Services, not necessarily to find the optimal
answers. Nevertheless, we still try to propose some tentative answers based on
our proposal for a composition calculus, which we hope can animate a proper
discussion
Temporal Data Modeling and Reasoning for Information Systems
Temporal knowledge representation and reasoning is a major research field in Artificial
Intelligence, in Database Systems, and in Web and Semantic Web research. The ability to
model and process time and calendar data is essential for many applications like appointment
scheduling, planning, Web services, temporal and active database systems, adaptive
Web applications, and mobile computing applications. This article aims at three complementary
goals. First, to provide with a general background in temporal data modeling
and reasoning approaches. Second, to serve as an orientation guide for further specific
reading. Third, to point to new application fields and research perspectives on temporal
knowledge representation and reasoning in the Web and Semantic Web
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