Chinese Postman Problem on edge-colored multigraphs

It is well-known that the Chinese postman problem on undirected and directed graphs is polynomial-time solvable. We extend this result to edge-colored multigraphs. Our result is in sharp contrast to the Chinese postman problem on mixed graphs, i.e., graphs with directed and undirected edges, for which the problem is NP-hard

Acyclicity in edge-colored graphs

A walk $W$ in edge-colored graphs is called properly colored (PC) if every pair of consecutive edges in $W$ is of different color. We introduce and study five types of PC acyclicity in edge-colored graphs such that graphs of PC acyclicity of type $i$ is a proper superset of graphs of acyclicity of type $i+1$, $i=1,2,3,4.$ The first three types are equivalent to the absence of PC cycles, PC trails, and PC walks, respectively. While graphs of types 1, 2 and 3 can be recognized in polynomial time, the problem of recognizing graphs of type 4 is, somewhat surprisingly, NP-hard even for 2-edge-colored graphs (i.e., when only two colors are used). The same problem with respect to type 5 is polynomial-time solvable for all edge-colored graphs. Using the five types, we investigate the border between intractability and tractability for the problems of finding the maximum number of internally vertex disjoint PC paths between two vertices and the minimum number of vertices to meet all PC paths between two vertices

The Complexity of Connectivity Problems in Forbidden-Transition Graphs And Edge-Colored Graphs

The notion of forbidden-transition graphs allows for a robust generalization of walks in graphs. In a forbidden-transition graph, every pair of edges incident to a common vertex is permitted or forbidden; a walk is compatible if all pairs of consecutive edges on the walk are permitted. Forbidden-transition graphs and related models have found applications in a variety of fields, such as routing in optical telecommunication networks, road networks, and bio-informatics. We initiate the study of fundamental connectivity problems from the point of view of parameterized complexity, including an in-depth study of tractability with regards to various graph-width parameters. Among several results, we prove that finding a simple compatible path between given endpoints in a forbidden-transition graph is W[1]-hard when parameterized by the vertex-deletion distance to a linear forest (so it is also hard when parameterized by pathwidth or treewidth). On the other hand, we show an algebraic trick that yields tractability when parameterized by treewidth of finding a properly colored Hamiltonian cycle in an edge-colored graph; properly colored walks in edge-colored graphs is one of the most studied special cases of compatible walks in forbidden-transition graphs

Networks, (K)nots, Nucleotides, and Nanostructures

Designing self-assembling DNA nanostructures often requires the identification of a route for a scaffolding strand of DNA through the target structure. When the target structure is modeled as a graph, these scaffolding routes correspond to Eulerian circuits subject to turning restrictions imposed by physical constraints on the strands of DNA. Existence of such Eulerian circuits is an NP-hard problem, which can be approached by adapting solutions to a version of the Traveling Salesperson Problem. However, the author and collaborators have demonstrated that even Eulerian circuits obeying these turning restrictions are not necessarily feasible as scaffolding routes by giving examples of nontrivially knotted circuits which cannot be traced by the unknotted scaffolding strand. Often, targets of DNA nanostructure self-assembly are modeled as graphs embedded on surfaces in space. In this case, Eulerian circuits obeying the turning restrictions correspond to A-trails, circuits which turn immediately left or right at each vertex. In any graph embedded on the sphere, all A-trails are unknotted regardless of the embedding of the sphere in space. We show that this does not hold in general for graphs on the torus. However, we show this property does hold for checkerboard-colorable graphs on the torus, that is, those graphs whose faces can be properly 2-colored, and provide a partial converse to this result. As a consequence, we characterize (with one exceptional family) regular triangulations of the torus containing unknotted A-trails. By developing a theory of sums of A-trails, we lift constructions from the torus to arbitrary n-tori, and by generalizing our work on A-trails to smooth circuit decompositions, we construct all torus links and certain sums of torus links from circuit decompositions of rectangular torus grids. Graphs embedded on surfaces are equivalent to ribbon graphs, which are particularly well-suited to modeling DNA nanostructures, as their boundary components correspond to strands of DNA and their twisted ribbons correspond to double-helices. Every ribbon graph has a corresponding delta-matroid, a combinatorial object encoding the structure of the ribbon-graph\u27s spanning quasi-trees (substructures having exactly one boundary component). We show that interlacement with respect to quasi-trees can be generalized to delta-matroids, and use the resulting structure on delta-matroids to provide feasible-set expansions for a family of delta-matroid polynomials, both recovering well-known expansions of this type (such as the spanning-tree expansion of the Tutte polynnomial) as well as providing several previously unknown expansions. Among these are expansions for the transition polynomial, a version of which has been used to study DNA nanostructure self-assembly, and the interlace polynomial, which solves a problem in DNA recombination