Software Analytics for Improving Program Comprehension

Title from PDF of title page viewed June 28, 2021Dissertation advisor: Yugyung LeeVitaIncludes bibliographical references (pages 122-143)Thesis (Ph.D.)--School of Computing and Engineering. University of Missouri--Kansas City, 2021Program comprehension is an essential part of software development and maintenance. Traditional methods of program comprehension, such as reviewing the codebase and documentation, are still challenging for understanding the software's overall structure and implementation. In recent years, software static analysis studies have emerged to facilitate program comprehensions, such as call graphs, which represent the system’s structure and its implementation as a directed graph. Furthermore, some studies focused on semantic enrichment of the software system problems using systematic learning analytics, including machine learning and NLP. While call graphs can enhance the program comprehension process, they still face three main challenges: (1) complex call graphs can become very difficult to understand making call graphs much harder to visualize and interpret by a developer and thus increases the overhead in program comprehension; (2) they are often limited to a single level of granularity, such as function calls; and (3) there is a lack of the interpretation semantics about the graphs. In this dissertation, we propose a novel framework, called CodEx, to facilitate and accelerate program comprehension. CodEx enables top-down and bottom-up analysis of the system's call graph and its execution paths for an enhanced program comprehension experience. Specifically, the proposed framework is designed to cope with the following techniques: multi-level graph abstraction using a coarsening technique, hierarchical clustering to represent the call graph into subgraphs (i.e., multi-levels of granularity), and interactive visual exploration of the graphs at different levels of abstraction. Moreover, we are also worked on building semantics of software systems using NLP and machine learning, including topic modeling, to interpret the meaning of the abstraction levels of the call graph.Introduction -- Multi-Level Call Graph for Program Comprehension -- Static Trace Clustering: Single-Level Approach -- Static Trace Clustering: Multi-Level Approach -- Topic Modeling for Cluster Analysis -- Visual Exploration of Software Clustered Traces -- Conclusion and Feature Work -- Appendi

A Learning Health System for Radiation Oncology

The proposed research aims to address the challenges faced by clinical data science researchers in radiation oncology accessing, integrating, and analyzing heterogeneous data from various sources. The research presents a scalable intelligent infrastructure, called the Health Information Gateway and Exchange (HINGE), which captures and structures data from multiple sources into a knowledge base with semantically interlinked entities. This infrastructure enables researchers to mine novel associations and gather relevant knowledge for personalized clinical outcomes. The dissertation discusses the design framework and implementation of HINGE, which abstracts structured data from treatment planning systems, treatment management systems, and electronic health records. It utilizes disease-specific smart templates for capturing clinical information in a discrete manner. HINGE performs data extraction, aggregation, and quality and outcome assessment functions automatically, connecting seamlessly with local IT/medical infrastructure. Furthermore, the research presents a knowledge graph-based approach to map radiotherapy data to an ontology-based data repository using FAIR (Findable, Accessible, Interoperable, Reusable) concepts. This approach ensures that the data is easily discoverable and accessible for clinical decision support systems. The dissertation explores the ETL (Extract, Transform, Load) process, data model frameworks, ontologies, and provides a real-world clinical use case for this data mapping. To improve the efficiency of retrieving information from large clinical datasets, a search engine based on ontology-based keyword searching and synonym-based term matching tool was developed. The hierarchical nature of ontologies is leveraged to retrieve patient records based on parent and children classes. Additionally, patient similarity analysis is conducted using vector embedding models (Word2Vec, Doc2Vec, GloVe, and FastText) to identify similar patients based on text corpus creation methods. Results from the analysis using these models are presented. The implementation of a learning health system for predicting radiation pneumonitis following stereotactic body radiotherapy is also discussed. 3D convolutional neural networks (CNNs) are utilized with radiographic and dosimetric datasets to predict the likelihood of radiation pneumonitis. DenseNet-121 and ResNet-50 models are employed for this study, along with integrated gradient techniques to identify salient regions within the input 3D image dataset. The predictive performance of the 3D CNN models is evaluated based on clinical outcomes. Overall, the proposed Learning Health System provides a comprehensive solution for capturing, integrating, and analyzing heterogeneous data in a knowledge base. It offers researchers the ability to extract valuable insights and associations from diverse sources, ultimately leading to improved clinical outcomes. This work can serve as a model for implementing LHS in other medical specialties, advancing personalized and data-driven medicine

Applications of Virtual Reality

Information Technology is growing rapidly. With the birth of high-resolution graphics, high-speed computing and user interaction devices Virtual Reality has emerged as a major new technology in the mid 90es, last century. Virtual Reality technology is currently used in a broad range of applications. The best known are games, movies, simulations, therapy. From a manufacturing standpoint, there are some attractive applications including training, education, collaborative work and learning. This book provides an up-to-date discussion of the current research in Virtual Reality and its applications. It describes the current Virtual Reality state-of-the-art and points out many areas where there is still work to be done. We have chosen certain areas to cover in this book, which we believe will have potential significant impact on Virtual Reality and its applications. This book provides a definitive resource for wide variety of people including academicians, designers, developers, educators, engineers, practitioners, researchers, and graduate students

Visual Analysis of In-Car Communication Networks

Analyzing, understanding and working with complex systems and large datasets has become a familiar challenge in the information era. The explosion of data worldwide affects nearly every part of society, particularly the science, engineering, health, and financial domains. Looking, for instance at the automotive industry, engineers are confronted with the enormously increased complexity of vehicle electronics. Over the years, a large number of advanced functions, such as ACC (adaptive cruise control), rear seat entertainment systems or automatic start/stop engines, has been integrated into the vehicle. Thereby, the functions have been more and more distributed over the vehicle, leading to the introduction of several communication networks. Overlooking all relevant data facets, understanding dependencies, analyzing the flow of messages and tracking down problems in these networks has become a major challenge for automotive engineers. Promising approaches to overcome information overload and to provide insight into complex data are Information Visualization (InfoVis) and Visual Analytics (VA). Over the last decades, these research communities spent much effort on developing new methods to help users obtain insight into complex data. However, few of these solutions have yet reached end users, and moving research into practice remains one of the great challenges in visual data analysis. This situation is particularly true for large company settings, where very little is known about additional challenges, obstacles and requirements in InfoVis/VA development and evaluation. Users have to be better integrated into our research processes in terms of adequate requirements analysis, understanding practices and challenges, developing well-directed, user-centered technologies and evaluating their value within a realistic context. This dissertation explores a novel InfoVis/VA application area, namely in-car communication networks, and demonstrates how information visualization methods and techniques can help engineers to work with and better understand these networks. Based on a three-year internship with a large automotive company and the close cooperation with domain experts, I grounded a profound understanding of specific challenges, requirements and obstacles for InfoVis/VA application in this area and learned that “designing with not for the people” is highly important for successful solutions. The three main contributions of this dissertation are: (1) An empirical analysis of current working practices of automotive engineers and the derivation of specific design requirements for InfoVis/VA tools; (2) the successful application and evaluation of nine prototypes, including the deployment of five systems; and (3) based on the three-year experience, a set of recommendations for developing and evaluating InfoVis systems in large company settings. I present ethnographic studies with more than 150 automotive engineers. These studies helped us to understand currently used tools, the underlying data, tasks as well as user groups and to categorize the field into application sub-domains. Based on these findings, we propose implications and recommendations for designing tools to support current practices of automotive network engineers with InfoVis/VA technologies. I also present nine InfoVis design studies that we built and evaluated with automotive domain experts and use them to systematically explore the design space of applying InfoVis to in-car communication networks. Each prototype was developed in a user-centered, participatory process, respectively with a focus on a specific sub-domain of target users with specific data and tasks. Experimental results from studies with real users are presented, that show that the visualization prototypes can improve the engineers’ work in terms of working efficiency, better understanding and novel insights. Based on lessons learned from repeatedly designing and evaluating our tools together with domain experts at a large automotive company, I discuss challenges and present recommendations for deploying and evaluating VA/InfoVis tools in large company settings. I hope that these recommendations can guide other InfoVis researchers and practitioners in similar projects by providing them with new insights, such as the necessity for close integration with current tools and given processes, distributed knowledge and high degree of specialization, and the importance of addressing prevailing mental models and time restrictions. In general, I think that large company settings are a promising and fruitful field for novel InfoVis applications and expect our recommendations to be useful tools for other researchers and tool designers

Big Data Analytics: A Survey

Internet-based programs and communication techniques have become widely used and respected in the IT industry recently. A persistent source of "big data," or data that is enormous in volume, diverse in type, and has a complicated multidimensional structure, is internet applications and communications. Today, several measures are routinely performed with no assurance that any of them will be helpful in understanding the phenomenon of interest in an era of automatic, large-scale data collection. Online transactions that involve buying, selling, or even investing are all examples of e-commerce. As a result, they generate data that has a complex structure and a high dimension. The usual data storage techniques cannot handle those enormous volumes of data. There is a lot of work being done to find ways to minimize the dimensionality of big data in order to provide analytics reports that are even more accurate and data visualizations that are more interesting. As a result, the purpose of this survey study is to give an overview of big data analytics along with related problems and issues that go beyond technology

Flood hazard hydrology: interdisciplinary geospatial preparedness and policy

Thesis (Ph.D.) University of Alaska Fairbanks, 2017Floods rank as the deadliest and most frequently occurring natural hazard worldwide, and in 2013 floods in the United States ranked second only to wind storms in accounting for loss of life and damage to property. While flood disasters remain difficult to accurately predict, more precise forecasts and better understanding of the frequency, magnitude and timing of floods can help reduce the loss of life and costs associated with the impact of flood events. There is a common perception that 1) local-to-national-level decision makers do not have accurate, reliable and actionable data and knowledge they need in order to make informed flood-related decisions, and 2) because of science--policy disconnects, critical flood and scientific analyses and insights are failing to influence policymakers in national water resource and flood-related decisions that have significant local impact. This dissertation explores these perceived information gaps and disconnects, and seeks to answer the question of whether flood data can be accurately generated, transformed into useful actionable knowledge for local flood event decision makers, and then effectively communicated to influence policy. Utilizing an interdisciplinary mixed-methods research design approach, this thesis develops a methodological framework and interpretative lens for each of three distinct stages of flood-related information interaction: 1) data generation—using machine learning to estimate streamflow flood data for forecasting and response; 2) knowledge development and sharing—creating a geoanalytic visualization decision support system for flood events; and 3) knowledge actualization—using heuristic toolsets for translating scientific knowledge into policy action. Each stage is elaborated on in three distinct research papers, incorporated as chapters in this dissertation, that focus on developing practical data and methodologies that are useful to scientists, local flood event decision makers, and policymakers. Data and analytical results of this research indicate that, if certain conditions are met, it is possible to provide local decision makers and policy makers with the useful actionable knowledge they need to make timely and informed decisions

A Pattern Approach to Examine the Design Space of Spatiotemporal Visualization

Pattern language has been widely used in the development of visualization systems. This dissertation applies a pattern language approach to explore the design space of spatiotemporal visualization. The study provides a framework for both designers and novices to communicate, develop, evaluate, and share spatiotemporal visualization design on an abstract level. The touchstone of the work is a pattern language consisting of fifteen design patterns and four categories. In order to validate the design patterns, the researcher created two visualization systems with this framework in mind. The first system displayed the daily routine of human beings via a polygon-based visualization. The second system showed the spatiotemporal patterns of co-occurring hashtags with a spiral map, sunburst diagram, and small multiples. The evaluation results demonstrated the effectiveness of the proposed design patterns to guide design thinking and create novel visualization practices