3,186 research outputs found
The Modified Direct Method: an Approach for Smoothing Planar and Surface Meshes
The Modified Direct Method (MDM) is an iterative mesh smoothing method for
smoothing planar and surface meshes, which is developed from the non-iterative
smoothing method originated by Balendran [1]. When smooth planar meshes, the
performance of the MDM is effectively identical to that of Laplacian smoothing,
for triangular and quadrilateral meshes; however, the MDM outperforms Laplacian
smoothing for tri-quad meshes. When smooth surface meshes, for trian-gular,
quadrilateral and quad-dominant mixed meshes, the mean quality(MQ) of all mesh
elements always increases and the mean square error (MSE) decreases during
smoothing; For tri-dominant mixed mesh, the quality of triangles always
descends while that of quads ascends. Test examples show that the MDM is
convergent for both planar and surface triangular, quadrilateral and tri-quad
meshes.Comment: 18 page
Tetrahedral mesh improvement using moving mesh smoothing, lazy searching flips, and RBF surface reconstruction
Given a tetrahedral mesh and objective functionals measuring the mesh quality
which take into account the shape, size, and orientation of the mesh elements,
our aim is to improve the mesh quality as much as possible. In this paper, we
combine the moving mesh smoothing, based on the integration of an ordinary
differential equation coming from a given functional, with the lazy flip
technique, a reversible edge removal algorithm to modify the mesh connectivity.
Moreover, we utilize radial basis function (RBF) surface reconstruction to
improve tetrahedral meshes with curved boundary surfaces. Numerical tests show
that the combination of these techniques into a mesh improvement framework
achieves results which are comparable and even better than the previously
reported ones.Comment: Revised and improved versio
Well-Centered Triangulation
Meshes composed of well-centered simplices have nice orthogonal dual meshes
(the dual Voronoi diagram). This is useful for certain numerical algorithms
that prefer such primal-dual mesh pairs. We prove that well-centered meshes
also have optimality properties and relationships to Delaunay and minmax angle
triangulations. We present an iterative algorithm that seeks to transform a
given triangulation in two or three dimensions into a well-centered one by
minimizing a cost function and moving the interior vertices while keeping the
mesh connectivity and boundary vertices fixed. The cost function is a direct
result of a new characterization of well-centeredness in arbitrary dimensions
that we present. Ours is the first optimization-based heuristic for
well-centeredness, and the first one that applies in both two and three
dimensions. We show the results of applying our algorithm to small and large
two-dimensional meshes, some with a complex boundary, and obtain a
well-centered tetrahedralization of the cube. We also show numerical evidence
that our algorithm preserves gradation and that it improves the maximum and
minimum angles of acute triangulations created by the best known previous
method.Comment: Content has been added to experimental results section. Significant
edits in introduction and in summary of current and previous results. Minor
edits elsewher
SurfelMeshing: Online Surfel-Based Mesh Reconstruction
We address the problem of mesh reconstruction from live RGB-D video, assuming
a calibrated camera and poses provided externally (e.g., by a SLAM system). In
contrast to most existing approaches, we do not fuse depth measurements in a
volume but in a dense surfel cloud. We asynchronously (re)triangulate the
smoothed surfels to reconstruct a surface mesh. This novel approach enables to
maintain a dense surface representation of the scene during SLAM which can
quickly adapt to loop closures. This is possible by deforming the surfel cloud
and asynchronously remeshing the surface where necessary. The surfel-based
representation also naturally supports strongly varying scan resolution. In
particular, it reconstructs colors at the input camera's resolution. Moreover,
in contrast to many volumetric approaches, ours can reconstruct thin objects
since objects do not need to enclose a volume. We demonstrate our approach in a
number of experiments, showing that it produces reconstructions that are
competitive with the state-of-the-art, and we discuss its advantages and
limitations. The algorithm (excluding loop closure functionality) is available
as open source at https://github.com/puzzlepaint/surfelmeshing .Comment: Version accepted to IEEE Transactions on Pattern Analysis and Machine
Intelligenc
3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries
Recent advances in electron microscopy have enabled the imaging of single
cells in 3D at nanometer length scale resolutions. An uncharted frontier for in
silico biology is the ability to simulate cellular processes using these
observed geometries. Enabling such simulations requires watertight meshing of
electron micrograph images into 3D volume meshes, which can then form the basis
of computer simulations of such processes using numerical techniques such as
the Finite Element Method. In this paper, we describe the use of our recently
rewritten mesh processing software, GAMer 2, to bridge the gap between poorly
conditioned meshes generated from segmented micrographs and boundary marked
tetrahedral meshes which are compatible with simulation. We demonstrate the
application of a workflow using GAMer 2 to a series of electron micrographs of
neuronal dendrite morphology explored at three different length scales and show
that the resulting meshes are suitable for finite element simulations. This
work is an important step towards making physical simulations of biological
processes in realistic geometries routine. Innovations in algorithms to
reconstruct and simulate cellular length scale phenomena based on emerging
structural data will enable realistic physical models and advance discovery at
the interface of geometry and cellular processes. We posit that a new frontier
at the intersection of computational technologies and single cell biology is
now open.Comment: 39 pages, 14 figures. High resolution figures and supplemental movies
available upon reques
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