Improving Memory Hierarchy Utilisation for Stencil Computations on Multicore Machines

Although modern supercomputers are composed of multicore machines, one can find scientists that still execute their legacy applications which were developed to monocore cluster where memory hierarchy is dedicated to a sole core. The main objective of this paper is to propose and evaluate an algorithm that identify an efficient blocksize to be applied on MPI stencil computations on multicore machines. Under the light of an extensive experimental analysis, this work shows the benefits of identifying blocksizes that will dividing data on the various cores and suggest a methodology that explore the memory hierarchy available in modern machines

Optimisation and parallelism in synchronous digital circuit simulators

Digital circuit simulation often requires a large amount of computation, resulting in long run times. We consider several techniques for optimising a brute force synchronous circuit simulator: an algorithm using an event queue that avoids recalculating quiescent parts of the circuit, a marking algorithm that is similar to the event queue but that avoids a central data structure, and a lazy algorithm that avoids calculating signals whose values are not needed. Two target architectures for the simulator are used: a sequential CPU, and a parallel GPGPU. The interactions between the different optimisations are discussed, and the performance is measured while the algorithms are simulating a simple but realistic scalable circuit

Heterogeneity-aware scheduling and data partitioning for system performance acceleration

Over the past decade, heterogeneous processors and accelerators have become increasingly prevalent in modern computing systems. Compared with previous homogeneous parallel machines, the hardware heterogeneity in modern systems provides new opportunities and challenges for performance acceleration. Classic operating systems optimisation problems such as task scheduling, and application-specific optimisation techniques such as the adaptive data partitioning of parallel algorithms, are both required to work together to address hardware heterogeneity. Significant effort has been invested in this problem, but either focuses on a specific type of heterogeneous systems or algorithm, or a high-level framework without insight into the difference in heterogeneity between different types of system. A general software framework is required, which can not only be adapted to multiple types of systems and workloads, but is also equipped with the techniques to address a variety of hardware heterogeneity. This thesis presents approaches to design general heterogeneity-aware software frameworks for system performance acceleration. It covers a wide variety of systems, including an OS scheduler targeting on-chip asymmetric multi-core processors (AMPs) on mobile devices, a hierarchical many-core supercomputer and multi-FPGA systems for high performance computing (HPC) centers. Considering heterogeneity from on-chip AMPs, such as thread criticality, core sensitivity, and relative fairness, it suggests a collaborative based approach to co-design the task selector and core allocator on OS scheduler. Considering the typical sources of heterogeneity in HPC systems, such as the memory hierarchy, bandwidth limitations and asymmetric physical connection, it proposes an application-specific automatic data partitioning method for a modern supercomputer, and a topological-ranking heuristic based schedule for a multi-FPGA based reconfigurable cluster. Experiments on both a full system simulator (GEM5) and real systems (Sunway Taihulight Supercomputer and Xilinx Multi-FPGA based clusters) demonstrate the significant advantages of the suggested approaches compared against the state-of-the-art on variety of workloads."This work is supported by St Leonards 7th Century Scholarship and Computer Science PhD funding from University of St Andrews; by UK EPSRC grant Discovery: Pattern Discovery and Program Shaping for Manycore Systems (EP/P020631/1)." -- Acknowledgement

Optimising runtime reconfigurable designs for high performance applications

This thesis proposes novel optimisations for high performance runtime reconfigurable designs. For a reconfigurable design, the proposed approach investigates idle resources introduced by static design approaches, and exploits runtime reconfiguration to eliminate the inefficient resources. The approach covers the circuit level, the function level, and the system level. At the circuit level, a method is proposed for tuning reconfigurable designs with two analytical models: a resource model for computational and memory resources and memory bandwidth, and a performance model for estimating execution time. This method is applied to tuning implementations of finite-difference algorithms, optimising arithmetic operators and memory bandwidth based on algorithmic parameters, and eliminating idle resources by runtime reconfiguration. At the function level, a method is proposed to automatically identify and exploit runtime reconfiguration opportunities while optimising resource utilisation. The method is based on Reconfiguration Data Flow Graph, a new hierarchical graph structure enabling runtime reconfigurable designs to be synthesised in three steps: function analysis, configuration organisation, and runtime solution generation. At the system level, a method is proposed for optimising reconfigurable designs by dynamically adapting the designs to available runtime resources in a reconfigurable system. This method includes two steps: compile-time optimisation and runtime scaling, which enable efficient workload distribution, asynchronous communication scheduling, and domain-specific optimisations. It can be used in developing effective servers for high performance applications.Open Acces

Dynamic Resource Allocation in Embedded, High-Performance and Cloud Computing

The availability of many-core computing platforms enables a wide variety of technical solutions for systems across the embedded, high-performance and cloud computing domains. However, large scale manycore systems are notoriously hard to optimise. Choices regarding resource allocation alone can account for wide variability in timeliness and energy dissipation (up to several orders of magnitude). Dynamic Resource Allocation in Embedded, High-Performance and Cloud Computing covers dynamic resource allocation heuristics for manycore systems, aiming to provide appropriate guarantees on performance and energy efficiency. It addresses different types of systems, aiming to harmonise the approaches to dynamic allocation across the complete spectrum between systems with little flexibility and strict real-time guarantees all the way to highly dynamic systems with soft performance requirements. Technical topics presented in the book include: Load and Resource Models Admission Control Feedback-based Allocation and Optimisation Search-based Allocation Heuristics Distributed Allocation based on Swarm Intelligence Value-Based Allocation Each of the topics is illustrated with examples based on realistic computational platforms such as Network-on-Chip manycore processors, grids and private cloud environments.Note.-- EUR 6,000 BPC fee funded by the EC FP7 Post-Grant Open Access Pilo

Heterogeneity, High Performance Computing, Self-Organization and the Cloud

application; blueprints; self-management; self-organisation; resource management; supply chain; big data; PaaS; Saas; HPCaa

Dynamic Resource Allocation in Embedded, High-Performance and Cloud Computing

The availability of many-core computing platforms enables a wide variety of technical solutions for systems across the embedded, high-performance and cloud computing domains. However, large scale manycore systems are notoriously hard to optimise. Choices regarding resource allocation alone can account for wide variability in timeliness and energy dissipation (up to several orders of magnitude). Dynamic Resource Allocation in Embedded, High-Performance and Cloud Computing covers dynamic resource allocation heuristics for manycore systems, aiming to provide appropriate guarantees on performance and energy efficiency. It addresses different types of systems, aiming to harmonise the approaches to dynamic allocation across the complete spectrum between systems with little flexibility and strict real-time guarantees all the way to highly dynamic systems with soft performance requirements. Technical topics presented in the book include: • Load and Resource Models• Admission Control• Feedback-based Allocation and Optimisation• Search-based Allocation Heuristics• Distributed Allocation based on Swarm Intelligence• Value-Based AllocationEach of the topics is illustrated with examples based on realistic computational platforms such as Network-on-Chip manycore processors, grids and private cloud environments

Heterogeneity, High Performance Computing, Self-Organization and the Cloud

application; blueprints; self-management; self-organisation; resource management; supply chain; big data; PaaS; Saas; HPCaa