A fully automatic CAD-CTC system based on curvature analysis for standard and low-dose CT data

Computed tomography colonography (CTC) is a rapidly evolving noninvasive medical investigation that is viewed by radiologists as a potential screening technique for the detection of colorectal polyps. Due to the technical advances in CT system design, the volume of data required to be processed by radiologists has increased significantly, and as a consequence the manual analysis of this information has become an increasingly time consuming process whose results can be affected by inter- and intrauser variability. The aim of this paper is to detail the implementation of a fully integrated CAD-CTC system that is able to robustly identify the clinically significant polyps in the CT data. The CAD-CTC system described in this paper is a multistage implementation whose main system components are: 1) automatic colon segmentation; 2) candidate surface extraction; 3) feature extraction; and 4) classification. Our CAD-CTC system performs at 100% sensitivity for polyps larger than 10 mm, 92% sensitivity for polyps in the range 5 to 10 mm, and 57.14% sensitivity for polyps smaller than 5 mm with an average of 3.38 false positives per dataset. The developed system has been evaluated on synthetic and real patient CT data acquired with standard and low-dose radiation levels

Auroral Image Processing Techniques - Machine Learning Classification and Multi-Viewpoint Analysis

Every year, millions of scientific images are acquired in order to study the auroral phenomena. The accumulated data contain a vast amount of untapped information that can be used in auroral science. Yet, auroral research has traditionally been focused on case studies, where one or a few auroral events have been investigated and explained in detail. Consequently, theories have often been developed on the basis of limited data sets, which can possibly be biased in location, spatial resolution or temporal resolution. Advances in technology and data processing now allow for acquisition and analysis of large image data sets. These tools have made it feasible to perform statistical studies based on auroral data from numerous events, varying geophysical conditions and multiple locations in the Arctic and Antarctic. Such studies require reliable auroral image processing techniques to organize, extract and represent the auroral information in a scientifically rigorous manner, preferably with a minimal amount of user interaction. This dissertation focuses on two such branches of image processing techniques: machine learning classification and multi-viewpoint analysis. Machine learning classification: This thesis provides an in-depth description on the implementation of machine learning methods for auroral image classification; from raw images to labeled data. The main conclusion of this work is that convolutional neural networks stand out as a particularly suitable classifier for auroral image data, achieving up to 91 % average class-wise accuracy. A major challenge is that most auroral images have an ambiguous auroral form. These images can not be readily labeled without establishing an auroral morphology, where each class is clearly defined. Multi-viewpoint analysis: Three multi-viewpoint analysis techniques are evaluated and described in this work: triangulation, shell-projection and 3-D reconstruction. These techniques are used for estimating the volume distribution of artificially induced aurora and the height and horizontal distribution of a newly reported auroral feature: Lumikot aurora. The multi-viewpoint analysis techniques are compared and methods for obtaining uncertainty estimates are suggested. Overall, this dissertation evaluates and describes auroral image processing techniques that require little or no user input. The presented methods may therefore facilitate statistical studies such as: probability studies of auroral classes, investigations of the evolution and formation of auroral structures, and studies of the height and distribution of auroral displays. Furthermore, automatic classification and cataloging of large image data sets will support auroral scientists in finding the data of interest, reducing the needed time for manual inspection of auroral images

Supermarket site assessment and the importance of spatial analysis data

Publicado originalmente em "Advances in Doctoral Research in Management", Volume 1, pp. 171-195, Fevereiro de 2006. ISBN 978-981-256-044-5 (Hardcover).This work is part of a dissertation that addresses the supermarket site assessment problem. We propose a 3-steps method for stores' site evaluation. (The 1st step yields the constitution of analogue groups of existent supermarkets, using a clustering procedure. On the 2nd step we use classification trees to classify new stores into specific analogue groups. Finally, on the 3rd step, we build a linear regression model to forecast new sites’ sales, based on several predictor variables, including dummy variables referred to analogue groups). In order to deal with demographic and competition data related to each supermarket, we use neighborhood delimitation techniques. Three alternative delimitation techniques and two aggregation procedures are compared. Results are evaluated based on the proportion of sales turnover variance that the alternative predictors are able to explain. (As a result, we select one aggregation procedure, although we conclude that none of the delimitation models: shortest path polygons and multiplicative weighted Voronoi diagrams, first and second order, present similar performance). Finally, we compare the relative importance of spatial data predictors in site assessment evaluation, using Dominance Analysis. As a result, the relevance of spatial analysis predictors clearly emerges being only dominated by the "trade area"

Artificial neural network-statistical approach for PET volume analysis and classification

Copyright © 2012 The Authors. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.This article has been made available through the Brunel Open Access Publishing Fund.The increasing number of imaging studies and the prevailing application of positron emission tomography (PET) in clinical oncology have led to a real need for efficient PET volume handling and the development of new volume analysis approaches to aid the clinicians in the clinical diagnosis, planning of treatment, and assessment of response to therapy. A novel automated system for oncological PET volume analysis is proposed in this work. The proposed intelligent system deploys two types of artificial neural networks (ANNs) for classifying PET volumes. The first methodology is a competitive neural network (CNN), whereas the second one is based on learning vector quantisation neural network (LVQNN). Furthermore, Bayesian information criterion (BIC) is used in this system to assess the optimal number of classes for each PET data set and assist the ANN blocks to achieve accurate analysis by providing the best number of classes. The system evaluation was carried out using experimental phantom studies (NEMA IEC image quality body phantom), simulated PET studies using the Zubal phantom, and clinical studies representative of nonsmall cell lung cancer and pharyngolaryngeal squamous cell carcinoma. The proposed analysis methodology of clinical oncological PET data has shown promising results and can successfully classify and quantify malignant lesions.This study was supported by the Swiss National Science Foundation under Grant SNSF 31003A-125246, Geneva Cancer League, and the Indo Swiss Joint Research Programme ISJRP 138866. This article is made available through the Brunel Open Access Publishing Fund

Wavelet-Based Kernel Construction for Heart Disease Classification

© 2019 ADVANCES IN ELECTRICAL AND ELECTRONIC ENGINEERINGHeart disease classification plays an important role in clinical diagnoses. The performance improvement of an Electrocardiogram classifier is therefore of great relevance, but it is a challenging task too. This paper proposes a novel classification algorithm using the kernel method. A kernel is constructed based on wavelet coefficients of heartbeat signals for a classifier with high performance. In particular, a wavelet packet decomposition algorithm is applied to heartbeat signals to obtain the Approximation and Detail coefficients, which are used to calculate the parameters of the kernel. A principal component analysis algorithm with the wavelet-based kernel is employed to choose the main features of the heartbeat signals for the input of the classifier. In addition, a neural network with three hidden layers in the classifier is utilized for classifying five types of heart disease. The electrocardiogram signals in nine patients obtained from the MIT-BIH database are used to test the proposed classifier. In order to evaluate the performance of the classifier, a multi-class confusion matrix is applied to produce the performance indexes, including the Accuracy, Recall, Precision, and F1 score. The experimental results show that the proposed method gives good results for the classification of the five mentioned types of heart disease.Peer reviewedFinal Published versio

A New Weighting Scheme in Weighted Markov Model for Predicting the Probability of Drought Episodes

Drought is a complex stochastic natural hazard caused by prolonged shortage of rainfall. Several environmental factors are involved in determining drought classes at the specific monitoring station. Therefore, efficient sequence processing techniques are required to explore and predict the periodic information about the various episodes of drought classes. In this study, we proposed a new weighting scheme to predict the probability of various drought classes under Weighted Markov Chain (WMC) model. We provide a standardized scheme of weights for ordinal sequences of drought classifications by normalizing squared weighted Cohen Kappa. Illustrations of the proposed scheme are given by including temporal ordinal data on drought classes determined by the standardized precipitation temperature index (SPTI). Experimental results show that the proposed weighting scheme for WMC model is sufficiently flexible to address actual changes in drought classifications by restructuring the transient behavior of a Markov chain. In summary, this paper proposes a new weighting scheme to improve the accuracy of the WMC, specifically in the field of hydrology

3D medical volume segmentation using hybrid multiresolution statistical approaches

This article is available through the Brunel Open Access Publishing Fund. Copyright © 2010 S AlZu’bi and A Amira.3D volume segmentation is the process of partitioning voxels into 3D regions (subvolumes) that represent meaningful physical entities which are more meaningful and easier to analyze and usable in future applications. Multiresolution Analysis (MRA) enables the preservation of an image according to certain levels of resolution or blurring. Because of multiresolution quality, wavelets have been deployed in image compression, denoising, and classification. This paper focuses on the implementation of efficient medical volume segmentation techniques. Multiresolution analysis including 3D wavelet and ridgelet has been used for feature extraction which can be modeled using Hidden Markov Models (HMMs) to segment the volume slices. A comparison study has been carried out to evaluate 2D and 3D techniques which reveals that 3D methodologies can accurately detect the Region Of Interest (ROI). Automatic segmentation has been achieved using HMMs where the ROI is detected accurately but suffers a long computation time for its calculations

EEG Resting-State Brain Topological Reorganization as a Function of Age

Resting state connectivity has been increasingly studied to investigate the effects of aging on the brain. A reduced organization in the communication between brain areas was demonstrated b y combining a variety of different imaging technologies (fMRI, EEG, and MEG) and graph theory. In this paper, we propose a methodology to get new insights into resting state connectivity and its variations with age, by combining advanced techniques of effective connectivity estimation, graph theoretical approach, and classification by SVM method. We analyzed high density EEG signal srecordedatrestfrom71healthysubjects(age:20–63years). Weighted and directed connectivity was computed by means of Partial Directed Coherence based on a General Linear Kalman filter approach. To keep the information collected by the estimator, weighted and directed graph indices were extracted from the resulting networks. A relation between brain network properties and age of the subject was found, indicating a tendency of the network to randomly organize increasing with age. This result is also confirmed dividing the whole population into two subgroups according to the age (young and middle-aged adults): significant differences exist in terms of network organization measures. Classification of the subjects by means of such indices returns an accuracy greater than 80

A LightGBM-Based EEG Analysis Method for Driver Mental States Classification

Fatigue driving can easily lead to road traffic accidents and bring great harm to individuals and families. Recently, electroencephalography- (EEG-) based physiological and brain activities for fatigue detection have been increasingly investigated. However, how to find an effective method or model to timely and efficiently detect the mental states of drivers still remains a challenge. In this paper, we combine common spatial pattern (CSP) and propose a light-weighted classifier, LightFD, which is based on gradient boosting framework for EEG mental states identification. ,e comparable results with traditional classifiers, such as support vector machine (SVM), convolutional neural network (CNN), gated recurrent unit (GRU), and large margin nearest neighbor (LMNN), show that the proposed model could achieve better classification performance, as well as the decision efficiency. Furthermore, we also test and validate that LightFD has better transfer learning performance in EEG classification of driver mental states. In summary, our proposed LightFD classifier has better performance in real-time EEG mental state prediction, and it is expected to have broad application prospects in practical brain-computer interaction (BCI)