25 research outputs found
Velocity autocorrelation function of a Brownian particle
In this article, we present molecular dynamics study of the velocity
autocorrelation function (VACF) of a Brownian particle. We compare the results
of the simulation with the exact analytic predictions for a compressible fluid
from [6] and an approximate result combining the predictions from hydrodynamics
at short and long times. The physical quantities which determine the decay were
determined from separate bulk simulations of the Lennard-Jones fluid at the
same thermodynamic state point.We observe that the long-time regime of the VACF
compares well the predictions from the macroscopic hydrodynamics, but the
intermediate decay is sensitive to the viscoelastic nature of the solvent.Comment: 7 pages, 6 figure
QUANTUM COMPUTING AND HPC TECHNIQUES FOR SOLVING MICRORHEOLOGY AND DIMENSIONALITY REDUCTION PROBLEMS
Tesis doctoral en perÃodo de exposición públicaDoctorado en Informática (RD99/11)(8908
Roadmap for optical tweezers
ArtÃculo escrito por un elevado número de autores, solo se referencian el que aparece en primer lugar, el nombre del grupo de colaboración, si le hubiere, y los autores pertenecientes a la UAMOptical tweezers are tools made of light that enable contactless pushing, trapping, and manipulation of objects, ranging from atoms to space light sails. Since the pioneering work by Arthur Ashkin in the 1970s, optical tweezers have evolved into sophisticated instruments and have been employed in a broad range of applications in the life sciences, physics, and engineering. These include accurate force and torque measurement at the femtonewton level, microrheology of complex fluids, single micro- and nano-particle spectroscopy, single-cell analysis, and statistical-physics experiments. This roadmap provides insights into current investigations involving optical forces and optical tweezers from their theoretical foundations to designs and setups. It also offers perspectives for applications to a wide range of research fields, from biophysics to space explorationEuropean Commission (Horizon 2020, Project No. 812780
Roadmap for optical tweezers
Optical tweezers are tools made of light that enable contactless pushing, trapping, and manipulation of objects, ranging from atoms to space light sails. Since the pioneering work by Arthur Ashkin in the 1970s, optical tweezers have evolved into sophisticated instruments and have been employed in a broad range of applications in the life sciences, physics, and engineering. These include accurate force and torque measurement at the femtonewton level, microrheology of complex fluids, single micro- and nano-particle spectroscopy, single-cell analysis, and statistical-physics experiments. This roadmap provides insights into current investigations involving optical forces and optical tweezers from their theoretical foundations to designs and setups. It also offers perspectives for applications to a wide range of research fields, from biophysics to space exploration.journal articl
Roadmap for Optical Tweezers 2023
Optical tweezers are tools made of light that enable contactless pushing, trapping, and manipulation of objects ranging from atoms to space light sails. Since the pioneering work by Arthur Ashkin in the 1970s, optical tweezers have evolved into sophisticated instruments and have been employed in a broad range of applications in life sciences, physics, and engineering. These include accurate force and torque measurement at the femtonewton level, microrheology of complex fluids, single micro- and nanoparticle spectroscopy, single-cell analysis, and statistical-physics experiments. This roadmap provides insights into current investigations involving optical forces and optical tweezers from their theoretical foundations to designs and setups. It also offers perspectives for applications to a wide range of research fields, from biophysics to space exploration
Cell mechanics in flow: algorithms and applications
The computer simulations are pervasively used to improve the knowledge about biophysical phenomena and to quantify effects which are difficult to study experimentally. Generally, the numerical methods and models are desired to be as accurate as possible on the chosen length and time scales, but, at the same time, affordable in terms of computations. Until recently, the cell mechanics and blood flow phenomena on the sub-micron resolution could not be rigorously studied using computer simulations. However, within the last decade, advances in methods and hardware catalyzed the development of models for cells mechanics and blood flow modeling which, previously, were considered to be not feasible. In this context, a model should accurately describe a phenomenon, be computationally affordable, and be flexible to be applied to study different biophysical changes. This thesis focuses on the development of the new methods, models, and high-performance software implementation that expand the class of problems which can be studied numerically using particle-based methods. Microvascular networks have complex geometry, often without any symmetry, and to study them we need to tackle computational domains with several inlets and outlets. However, an absence of appropriate boundary conditions for particle- based methods hampers study of the blood flow in these domains. Another obstacle to model complex blood flow problems is the absence the highperformance software. This problem restricts the applicability of the of particlebased cell flow models to relatively small systems. Although there are several validated red blood cell models, to date, there are no models for suspended eukaryotic cells. The present thesis addresses these issues. We introduce new open boundary conditions for particle-based systems and apply them to study blood flow in a part of a microvascular network. We develop a software demonstrating outstanding performance on the largest supercomputers and used it to study blood flow in microfluidic devices. Finally, we present a new eukaryotic cell model which helps in quantifying the effect of sub-cellular components on the cell mechanics during deformations in microfluidic devices
Advances in Molecular Simulation
Molecular simulations are commonly used in physics, chemistry, biology, material science, engineering, and even medicine. This book provides a wide range of molecular simulation methods and their applications in various fields. It reflects the power of molecular simulation as an effective research tool. We hope that the presented results can provide an impetus for further fruitful studies
Statics and Dynamics of Skyrmions Interacting with Pinning: A Review
Magnetic skyrmions are topologically stable nanoscale particle-like objects
that were discovered in 2009. Since that time, intense research interest has
led to the identification of numerous compounds that support skyrmions over a
range of conditions spanning cryogenic to room temperatures. Skyrmions can be
set into motion under various types of driving, and the combination of their
size, stability, and dynamics makes them ideal candidates for numerous
applications. Skyrmions represent a new class of system in which the energy
scales of the skyrmion-skyrmion interactions, sample disorder, temperature, and
drive can compete. A growing body of work indicates that the static and dynamic
states of skyrmions can be influenced strongly by pinning or disorder in the
sample; thus, an understanding of such effects is essential for the eventual
use of skyrmions in applications. In this article we review the current state
of knowledge regarding individual skyrmions and skyrmion assemblies interacting
with quenched disorder or pinning. We outline the microscopic mechanisms for
skyrmion pinning, including the repulsive and attractive interactions that can
arise from impurities, grain boundaries, or nanostructures. This is followed by
descriptions of depinning phenomena, sliding states over disorder, the effect
of pinning on the skyrmion Hall angle, the competition between thermal and
pinning effects, the control of skyrmion motion using ordered potential
landscapes such as one- or two-dimensional periodic asymmetric substrates, the
creation of skyrmion diodes, and skyrmion ratchet effects. We highlight the
distinctions arising from internal modes and the strong gyroscopic or Magnus
forces that cause the dynamical states of skyrmions to differ from those of
other systems with pinning. We also discuss future directions and open
questions related to the pinning and dynamics in skyrmion systems.Comment: 66 pages, 71 figure
Magnetic Hybrid-Materials
Externally tunable properties allow for new applications of suspensions of micro- and nanoparticles in sensors and actuators in technical and medical applications. By means of easy to generate and control magnetic fields, fluids inside of matrices are studied. This monnograph delivers the latest insigths into multi-scale modelling, manufacturing and application of those magnetic hybrid materials