352 research outputs found

    How automated image analysis techniques help scientists in species identification and classification?

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    Identification of taxonomy at a specific level is time consuming and reliant upon expert ecologists. Hence the demand for automated species identification incre­ased over the last two decades. Automation of data classification is primarily focussed on images while incorporating and analysing image data has recently become easier due to developments in computational technology. Research ef­forts on identification of species include specimens’ image processing, extraction of identical features, followed by classifying them into correct categories. In this paper, we discuss recent automated species identification systems, mainly for categorising and evaluating their methods. We reviewed and compared different methods in step by step scheme of automated identification and classification systems of species images. The selection of methods is influenced by many variables such as level of classification, number of training data and complexity of images. The aim of writing this paper is to provide researchers and scientists an extensive background study on work related to automated species identification, focusing on pattern recognition techniques in building such systems for biodiversity studies. (Folia Morphol 2018; 77, 2: 179–193

    Automated identification of moth species

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    In this paper, Digital Automated Identification System (DAISY) was used to identify species of local moths. 210 species of super family Bombycoidea from Moth of Borneo (Part 3) were trained in DAISY. The overall identification of Moths gave a fairly accurate retrieval, with F1= 0.81

    Remote sensing for the Spanish forests in the 21st century: a review of advances, needs, and opportunities

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    [EN] Forest ecosystems provide a host of services and societal benefits, including carbon storage, habitat for fauna, recreation, and provision of wood or non-wood products. In a context of complex demands on forest resources, identifying priorities for biodiversity and carbon budgets require accurate tools with sufficient temporal frequency. Moreover, understanding long term forest dynamics is necessary for sustainable planning and management. Remote sensing (RS) is a powerful means for analysis, synthesis and report, providing insights and contributing to inform decisions upon forest ecosystems. In this communication we review current applications of RS techniques in Spanish forests, examining possible trends, needs, and opportunities offered by RS in a forestry context. Currently, wall-to-wall optical and LiDAR data are extensively used for a wide range of applications—many times in combination—whilst radar or hyperspectral data are rarely used in the analysis of Spanish forests. Unmanned Aerial Vehicles (UAVs) carrying visible and infrared sensors are gaining ground in acquisition of data locally and at small scale, particularly for health assessments. Forest fire identification and characterization are prevalent applications at the landscape scale, whereas structural assessments are the most widespread analyses carried out at limited extents. Unparalleled opportunities are offered by the availability of diverse RS data like those provided by the European Copernicus programme and recent satellite LiDAR launches, processing capacity, and synergies with other ancillary sources to produce information of our forests. Overall, we live in times of unprecedented opportunities for monitoring forest ecosystems with a growing support from RS technologies.SIPart of this work was funded by the Spanish Ministry of Science, Innovation and University through the project AGL2016-76769-C2-1-R “Influence of natural disturbance regimes and management on forests dynamics, structure and carbon balance (FORESTCHANGE)”

    Remote sensing for the Spanish forests in the 21st century: a review of advances, needs, and opportunities

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    [EN] Forest ecosystems provide a host of services and societal benefits, including carbon storage, habitat for fauna, recreation, and provision of wood or non-wood products. In a context of complex demands on forest resources, identifying priorities for biodiversity and carbon budgets require accurate tools with sufficient temporal frequency. Moreover, understanding long term forest dynamics is necessary for sustainable planning and management. Remote sensing (RS) is a powerful means for analysis, synthesis, and report, providing insights and contributing to inform decisions upon forest ecosystems. In this communication we review current applications of RS techniques in Spanish forests, examining possible trends, needs, and opportunities offered by RS in a forestry context. Currently, wall-to-wall optical and LiDAR data are extensively used for a wide range of applications-many times in combination-whilst radar or hyperspectral data are rarely used in the analysis of Spanish forests. Unmanned Aerial Vehicles (UAVs) carrying visible and infrared sensors are gaining ground in acquisition of data locally and at small scale, particularly for health assessments. Forest fire identification and characterization are prevalent applications at the landscape scale, whereas structural assessments are the most widespread analyses carried out at limited extents. Unparalleled opportunities are offered by the availability of diverse RS data like those provided by the European Copernicus programme and recent satellite LiDAR launches, processing capacity, and synergies with other ancillary sources to produce information of our forests. Overall, we live in times of unprecedented opportunities for monitoring forest ecosystems with a growing support from RS technologies.Part of this work was funded by the Spanish Ministry of Science, innovation and University through the project AGL2016-76769-C2-1-R "Influence of natural disturbance regimes and management on forests dynamics. structure and carbon balance (FORESTCHANGE)".Gómez, C.; Alejandro, P.; Hermosilla, T.; Montes, F.; Pascual, C.; Ruiz Fernández, LÁ.; Álvarez-Taboada, F.... (2019). Remote sensing for the Spanish forests in the 21st century: a review of advances, needs, and opportunities. Forest Systems. 28(1):1-33. https://doi.org/10.5424/fs/2019281-14221S133281Ungar S, Pearlman J, Mendenhall J, Reuter D, 2003. Overview of the Earth Observing-1 (EO-1) mission. IEEE T Geosci Remote 41: 1149−1159.Valbuena R, Mauro F, Arjonilla FJ, Manzanera JA, 2011. Comparing Airborne Laser Scanning-Imagery Fusion Methods Based on Geometric Accuracy in Forested Areas. Remote Sens Environ 115(8): 1942-1956.Valbuena R, Mauro F, Rodríguez-Solano R, Manzanera JA, 2012. Partial Least Squares for Discriminating Variance Components in GNSS Accuracy Obtained Under Scots Pine Canopies. Forest Sci 58(2): 139-153.Valbuena R, De Blas A, Martín Fernández S, Maltamo M, Nabuurs GJ, Manzanera JA, 2013a. Within-Species Benefits of Back-projecting Laser Scanner and Multispectral Sensors in Monospecific P. sylvestris Forests. Eur J Remote Sens 46: 401-416.Valbuena R, Maltamo M, Martín-Fernández S, Packalen P, Pascual C, Nabuurs G-J, 2013b. Patterns of covariance between airborne laser scanning metrics and Lorenz curve descriptors of tree size inequality. Can J Remote Sens 39(1): 18-31.Valbuena R, Packalen P, García-Abril A, Mehtätalo L, Maltamo M, 2013c. Characterizing Forest Structural Types and Shelterwood Dynamics from Lorenz-based Indicators Predicted by Airborne Laser Scanning. Can J For Res 43: 1063-1074.Valbuena R, Maltamo M, Packalen P, 2016a. Classification of Multi-Layered Forest Development Classes from Low-Density National Airborne LiDAR Datasets. Forestry 89: 392-341.Valbuena R, Maltamo M, Packalen P, 2016b. Classification of Forest Development Stages from National Low-Density LiDAR Datasets: a Comparison of Machine Learning Methods. Revista de Teledetección 45: 15-25.Valbuena R, Hernando A, Manzanera JA, Martínez-Falero E, García-Abril A, Mola-Yudego B, 2017a. Most Similar Neighbour Imputation of Forest Attributes Using Metrics Derived from Combined Airborne LIDAR and Multispectral Sensors. Int J Digit Earth 11 (12): 1205-1218.Valbuena R, Hernando A, Manzanera JA, Görgens EB, Almeida DRA, Mauro F, García-Abril A, Coomes DA, 2017b. Enhancing of accuracy assessment for forest above-ground biomass estimates obtained from remote sensing via hypothesis testing and overfitting evaluation. Eco Mod 622: 15-26.Valbuena-Rabadán M, Santamaría-Pe-a J, Sanz-Adán F, 2016. Estimation of diameter and height of individual trees for Pinus sylvestris L. based on the individualising of crowns using airborne LiDAR and the National Forest Inventory data. For Sys 25(1): e046Varo-Martínez MA, Navarro-Cerrillo RM, Hernández-Clemente R, Duque-Lazo J, 2017. Semi-automated stand delineation in Mediterranean Pinus sylvestris plantations through segmentation of LiDAR data: The influence of pulse density. Int J Appl Earth Obs 56: 54-64.Vázquez de la Cueva A, 2008. Structural attributes of three forest types in central Spain and Landsat ETM+ information evaluated with redundancy analysis. Int J Remote Sens 29: 5657-5676.Verdú F, Salas J, 2010. Cartografía de áreas quemadas mediante análisis visual de imágenes de satélite en la Espa-a peninsular para el periodo 1991–2005. Geofocus 10: 54–81.Viana-Soto A, Aguado I, Martínez S, 2017. Assessment of post-fire vegetation recovery using fire severity and geographical data in the Mediterranean region (Spain). Environments 4: 90.Vicente-Serrano SG, Pérez-Cabello F, Lasanta T, 2011. Pinus halepensis regeneration after a wildfire in a semiarid environment: assessment using multitemporal Landsat images. Int J Wildland Fire 20Ñ 195-208.Viedma O, Quesada J, Torres I, De Santis A, Moreno JM, 2015. Fire severity in a large fire in a Pinus pinaster forest is highly predictable from burning conditions, stand structure, and topography. Ecosystems 18: 237-250.Yebra M, Chuvieco E, 2009. Generation of a species-specific look-up table for fuel moisture content assessment. IEEE J Selected topics in applied earth observation and RS 2 (1): 21-26.White JC, Wulder MA, Varhola A, Vastaranta M, Coops NC, Cook BD, Pitt D, Woods M, 2013. A best practices guide for generating forest inventory attributes from airborne laser scanning data using an area-based approach. Natural Resources Canada, Canadian Forest Service, Canadian Wood Fibre Centre, Victoria, BC. Information Report FI-X-010, 39 pp.White JC, Wulder MA, Hobart GW, Luther JE, Hermosilla T, Griffiths P, Coops NC, Hall RJ, Hostert P, Dyk A, Guindon L, 2014. Pixel-based image compositing for large-area dense time series applications and science. Can J Remote Sens 40 (3): 192-212.White JC, Coops NC, Wulder MA, Vastaranta M, Hilker T, Tompalski P, 2016. Remote sensing technologies for enhancing forest inventories: a review. Can J Remote Sens 42: 619-641.White JC, Wulder MA, Hermosilla T, Coops NC, Hobart GW, 2017. A nationwide characterization of 25 years of forest disturbance and recovery for Canada using Landsat time series. Remote Sens Environ 194: 303-321.Wulder MA, 1998. Optical remote-sensing techniques for the assessment of forest inventory and biophysical parameters. Progr Phys Geog 22 (4): 449-476.Wulder MA, Dymond CC, 2004. Remote sensing in survey of Mountain Pine impacts: review and recommendations. MPBI Report. Canadian Forest Service. Natural Resources Canada, Victoria, BC, Canada. 89 pp.Wulder MA, Masek JG, Cohen WB, Loveland TR, Woodcock CE, 2012. Opening the archive: how free data has enabled the science and monitoring promise of Landsat. Remote Sens Environ 122: 2-10.Wulder MA, Hilker T, White JC, Coops NC, Masek JG, Pflugmacher D, Crevier Y, 2015. Virtual constellations for global terrestrial monitoring. Remote Sens Environ 170: 62-76.Wulder MA, White JC, Loveland TR, Woodcock CE, Belward AS, Cohen WB, Fosnight EA, Shaw J, Masek JG, Roy DP, 2016. The global Landsat archive: Status, consolidation, and direction. Remote Sens Environ 185: 271-283.Xie Q, Zhu J, Wang Ch, Fu H, López-Sánchez JM, Ballester-Berman JD, 2017. A modified dual-baseline PolInSAR method for forest height estimation. Remote Sens-Basel 9 (8): 819.Xie Y, Sha Z, Yu M, 2008. Remote sensing imagery in vegetation mapping: a review. J Plant Ecol 1 (1): 9-23.Zald HSJ, Wulder MA, White JC, Hilker T, Hermosilla T, Hobart GW, Coops NC, 2016. Integrating Landsat pixel composites and change metrics with LiDAR plots to predictively map forest structure and aboveground biomass in Saskatchewan, Canada. Remote Sens Environ 176: 188-201.Zarco-Tejada PJ, Diaz-Varela R, Angileri V, Loudjani P, 2014. Tree height quantification using very high resolution imagery acquired from an unmanned aerial vehicle (UAV) and automatic 3D photo-reconstruction methods. Eur J Agron 55: 89-99.Zarco-Tejada PJ, Hornero A, Hernández-Clemente R, Beck PSA, 2018. Understanding the temporal dimension of the red-edge spectral region for forest decline detection using high-resolution hyperspectral and Sentinel-2A imagery. ISPRS J Photogramm 137: 134-148

    Identification of selected monogeneans using image processing, artificial neural network and K-nearest neighbor

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    Over the last two decades, improvements in developing computational tools have made significant contributions to the classification of images of biological specimens to their corresponding species. These days, identification of biological species is much easier for taxonomists and even non-taxonomists due to the development of automated computer techniques and systems. In this study, we developed a fully automated identification model for monogenean images based on the shape characters of the haptoral organs of eight species: Sinodiplectanotrema malayanum, Diplectanum jaculator, Trianchoratus pahangensis, Trianchoratus lonianchoratus, Trianchoratus malayensis, Metahaliotrema ypsilocleithru, Metahaliotrema mizellei and Metahaliotrema similis. Linear Discriminant Analysis (LDA) method was used to reduce the dimension of extracted feature vectors which were then used in the classification with K-Nearest Neighbor (KNN) and Artificial Neural Network (ANN) classifiers for the identification of monogenean specimens of eight species. The need for the discovery of new characters for identification of species has been acknowledged for log by systematic parasitology. Using the overall form of anchors and bars for extraction of features led to acceptable results in automated classification of monogeneans. To date, this is the first fully automated identification model for monogeneans with an accuracy of 86.25% using KNN and 93.1% using ANN

    English for Geodesy and Land Management Students: tutorial.

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    English for Geodesy and Land Management Students is the manual for the students majoring in this specialty «Geodesy and Land Management» at higher education institutions and aimed at mastering the English language for specific purposes in this domain. The manual consists of 2 parts comprising the key theoretical issues students study at their special classes. The 1st part consists of 11 units. The 2nd part consists of 14 units. Each unit is designed in the way to provide students with the possibility to practice all language skills giving them flexibility in the field of future professional sphere. In the last part of the tutorial students can find texts for supplementary reading useful for efficient independent work

    Investigating the potential for detecting Oak Decline using Unmanned Aerial Vehicle (UAV) Remote Sensing

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    This PhD project develops methods for the assessment of forest condition utilising modern remote sensing technologies, in particular optical imagery from unmanned aerial systems and with Structure from Motion photogrammetry. The research focuses on health threats to the UK’s native oak trees, specifically, Chronic Oak Decline (COD) and Acute Oak Decline (AOD). The data requirements and methods to identify these complex diseases are investigatedusing RGB and multispectral imagery with very high spatial resolution, as well as crown textural information. These image data are produced photogrammetrically from multitemporal unmanned aerial vehicle (UAV) flights, collected during different seasons to assess the influence of phenology on the ability to detect oak decline. Particular attention is given to the identification of declined oak health within the context of semi-natural forests and heterogenous stands. Semi-natural forest environments pose challenges regarding naturally occurring variability. The studies investigate the potential and practical implications of UAV remote sensing approaches for detection of oak decline under these conditions. COD is studied at Speculation Cannop, a section in the Forest of Dean, dominated by 200-year-old oaks, where decline symptoms have been present for the last decade. Monks Wood, a semi-natural woodland in Cambridgeshire, is the study site for AOD, where trees exhibit active decline symptoms. Field surveys at these sites are designed and carried out to produce highly-accurate differential GNSS positional information of symptomatic and control oak trees. This allows the UAV data to be related to COD or AOD symptoms and the validation of model predictions. Random Forest modelling is used to determine the explanatory value of remote sensing-derived metrics to distinguish trees affected by COD or AOD from control trees. Spectral and textural variables are extracted from the remote sensing data using an object-based approach, adopting circular plots around crown centres at individual tree level. Furthermore, acquired UAV imagery is applied to generate a species distribution map, improving on the number of detectable species and spatial resolution from a previous classification using multispectral data from a piloted aircraft. In the production of the map, parameters relevant for classification accuracy, and identification of oak in particular, are assessed. The effect of plot size, sample size and data combinations are studied. With optimised parameters for species classification, the updated species map is subsequently employed to perform a wall-to-wall prediction of individual oak tree condition, evaluating the potential of a full inventory detection of declined health. UAV-acquired data showed potential for discrimination of control trees and declined trees, in the case of COD and AOD. The greatest potential for detecting declined oak condition was demonstrated with narrowband multispectral imagery. Broadband RGB imagery was determined to be unsuitable for a robust distinction between declined and control trees. The greatest explanatory power was found in remotely-sensed spectra related to photosynthetic activity, indicated by the high feature importance of nearinfrared spectra and the vegetation indices NDRE and NDVI. High feature importance was also produced by texture metrics, that describe structural variations within the crown. The findings indicate that the remotely sensed explanatory variables hold significant information regarding changes in leaf chemistry and crown morphology that relate to chlorosis, defoliation and dieback occurring in the course of the decline. In the case of COD, a distinction of symptomatic from control trees was achieved with 75 % accuracy. Models developed for AOD detection yielded AUC scores up to 0.98,when validated on independent sample data. Classification of oak presence was achieved with a User’s accuracy of 97 % and the produced species map generated 95 % overall accuracy across the eight species within the study area in the north-east of Monks Wood. Despite these encouraging results, it was shown that the generalisation of models is unfeasible at this stage and many challenges remain. A wall-to-wall prediction of decline status confirmed the inability to generalise, yielding unrealistic results, with a high number of declined trees predicted. Identified weaknesses of the developed models indicate complexity related to the natural variability of heterogenous forests combined with the diverse symptoms of oak decline. Specific to the presented studies, additional limitations were attributed to limited ground truth, consequent overfitting,the binary classification of oak health status and uncertainty in UAV-acquired reflectance values. Suggestions for future work are given and involve the extension of field sampling with a non-binary dependent variable to reflect the severity of oak decline induced stress. Further technical research on the quality and reliability of UAV remote sensing data is also required

    CHARACTERIZING FOREST STANDS USING UNMANNED AERIAL SYSTEMS (UAS) DIGITAL PHOTOGRAMMETRY: ADVANCEMENTS AND CHALLENGES IN MONITORING LOCAL SCALE FOREST COMPOSITION, STRUCTURE, AND HEALTH

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    Present-day forests provide a wide variety of ecosystem services to the communities that rely on them. At the same time, these environments face routine and substantial disturbances that direct the need for site-specific, timely, and accurate monitoring/management (i.e., precision forestry). Unmanned Aerial Systems (UAS or UAV) and their associated technologies offer a promising tool for conducting such precision forestry. Now, even with only natural color, uncalibrated, UAS imagery, software workflows involving Structure from Motion (SfM) (i.e., digital photogrammetry) modelling and segmentation can be used to characterize the features of individual trees or forest communities. In this research, we tested the effectiveness of UAS-SfM for mapping local scale forest composition, structure, and health. Our first study showed that digital (automated) methods for classifying forest composition that utilized UAS imagery produced a higher overall accuracy than those involving other high-spatial-resolution imagery (7.44% - 16.04%). The second study demonstrated that natural color sensors could provide a highly efficient estimate of individual tree diameter at breast height (dbh) (± 13.15 cm) as well as forest stand basal area, tree density, and stand density. In the final study, we join a growing number of researchers examining precision applications in forest health monitoring. Here, we demonstrate that UAS, equipped with both natural color and multispectral sensors, are more capable of distinguishing forest health classes than freely available high-resolution airborne imagery. For five health classes, these UAS data produced a 14.93% higher overall accuracy in comparison to the airborne imagery. Together, these three chapters present a wholistic approach to enhancing and enriching precision forest management, which remains a critical requirement for effectively managing diverse forested landscapes

    Identification of Pecan Weevils Through Image Processing

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    The Pecan Weevil attacks the pecan nut, causes significant financial loss and can cause total crop failure. A traditional way of controlling this insect is by setting traps in the pecan orchard and regularly checking them for weevils. The objective of this study is to develop a recognition system that can serve in a wireless imaging network for monitoring pecan weevils. Recognition methods used in this study are based on template matching. The training set consisted of 205 pecan weevils and the testing set included 30 randomly selected pecan weevils and 75 other insects which typically exist in a pecan habitat. Five recognition methods, namely, Zernike moments, Region properties, Normalized cross-correlation, String matching, and Fourier descriptors methods were used in this recognition system. It was found that no single method was sufficiently robust to yield the desired recognition rate, especially in varying data sets. It was also found that region-based shape representation methods were better suited inBiosystems and Agricultural Engineerin
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