A generative model for concurrent image retrieval and ROI segmentation

Proceedings of: 10th International Workshop on Content-Based Multimedia Indexing (CBMI). Annecy, France, 27-29 June 2012.This paper proposes a probabilistic generative model that concurrently tackles the problems of image retrieval and detection of the region-of-interest (ROI). By introducing a latent variable that classifies the matches as true or false, we specifically focus on the application of geometric constrains to the keypoint matching process and the achievement of robust estimates of the geometric transformation between two images showing the same object. Our experiments in a challenging image retrieval database demonstrate that our approach outperforms the most prevalent approach for geometrically constrained matching, and compares favorably to other state-of-the-art methods. Furthermore, the proposed technique concurrently provides very good segmentations of the region of interest.This work has been partially supported by the project AFICUS, co-funded by the Spanish Ministry of Industry, Trade and Tourism, and the European Fund for Regional Development, with Ref.: TSI-020110- 2009-103, and the National Grant TEC2011-26807 of the Spanish Ministry of Science and Innovation.Publicad

A Generative Model for Concurrent Image Retrieval and ROI Segmentation

This paper proposes a probabilistic generative model that concurrently tackles the problems of image retrieval and region-of-interest (ROI) segmentation. Specifically, the proposed model takes into account several properties of the matching process between two objects in different images, namely: objects undergoing a geometric transformation, typical spatial location of the region of interest, and visual similarity. In this manner, our approach improves the reliability of detected true matches between any pair of images. Furthermore, by taking advantage of the links to the ROI provided by the true matches, the proposed method is able to perform a suitable ROI segmentation. Finally, the proposed method is able to work when there is more than one ROI in the query image. Our experiments on two challenging image retrieval datasets proved that our approach clearly outperforms the most prevalent approach for geometrically constrained matching and compares favorably to most of the state-of-the-art methods. Furthermore, the proposed technique concurrently provided very good segmentations of the ROI. Furthermore, the capability of the proposed method to take into account several objects-of-interest was also tested on three experiments: two of them concerning image segmentation and object detection in multi-object image retrieval tasks, and another concerning multiview image retrieval. These experiments proved the ability of our approach to handle scenarios in which more than one object of interest is present in the query.This work has been partially supported by the project AFICUS, co-funded by the Spanish Ministry of Industry, Trade and Tourism, and the European Fund for Regional Development, with Ref.: TSI-020110-2009-103, and the National Grant TEC2011-26807 of the Spanish Ministry of Science and Innovation.Publicad

Towards a Visual-Language Foundation Model for Computational Pathology

The accelerated adoption of digital pathology and advances in deep learning have enabled the development of powerful models for various pathology tasks across a diverse array of diseases and patient cohorts. However, model training is often difficult due to label scarcity in the medical domain and the model's usage is limited by the specific task and disease for which it is trained. Additionally, most models in histopathology leverage only image data, a stark contrast to how humans teach each other and reason about histopathologic entities. We introduce CONtrastive learning from Captions for Histopathology (CONCH), a visual-language foundation model developed using diverse sources of histopathology images, biomedical text, and notably over 1.17 million image-caption pairs via task-agnostic pretraining. Evaluated on a suite of 13 diverse benchmarks, CONCH can be transferred to a wide range of downstream tasks involving either or both histopathology images and text, achieving state-of-the-art performance on histology image classification, segmentation, captioning, text-to-image and image-to-text retrieval. CONCH represents a substantial leap over concurrent visual-language pretrained systems for histopathology, with the potential to directly facilitate a wide array of machine learning-based workflows requiring minimal or no further supervised fine-tuning

Deep Learning in Cardiology

The medical field is creating large amount of data that physicians are unable to decipher and use efficiently. Moreover, rule-based expert systems are inefficient in solving complicated medical tasks or for creating insights using big data. Deep learning has emerged as a more accurate and effective technology in a wide range of medical problems such as diagnosis, prediction and intervention. Deep learning is a representation learning method that consists of layers that transform the data non-linearly, thus, revealing hierarchical relationships and structures. In this review we survey deep learning application papers that use structured data, signal and imaging modalities from cardiology. We discuss the advantages and limitations of applying deep learning in cardiology that also apply in medicine in general, while proposing certain directions as the most viable for clinical use.Comment: 27 pages, 2 figures, 10 table

Bilinear Models of Parts and Appearances in Generative Adversarial Networks.

Recent advances in the understanding of Generative Adversarial Networks (GANs) have led to remarkable progress in visual editing and synthesis tasks, capitalizing on the rich semantics that are embedded in the latent spaces of pre-trained GANs. However, existing methods are often tailored to specific GAN architectures and are limited to either discovering global semantic directions that do not facilitate localized control, or require some form of supervision through manually provided regions or segmentation masks. In this light, we present an architecture-agnostic approach that jointly discovers factors representing spatial parts and their appearances in an entirely unsupervised fashion. These factors are obtained by applying a semi-nonnegative tensor factorization on the feature maps, which in turn enables context-aware local image editing with pixel-level control. In addition, we show that the discovered appearance factors correspond to saliency maps that localize concepts of interest, without using any labels. Experiments on a wide range of GAN architectures and datasets show that, in comparison to the state of the art, our method is far more efficient in terms of training time and, most importantly, provides much more accurate localized control

Voronoi-Based Compact Image Descriptors: Efficient Region-of-Interest Retrieval With VLAD and Deep-Learning-Based Descriptors

We investigate the problem of image retrieval based on visual queries when the latter comprise arbitrary regionsof- interest (ROI) rather than entire images. Our proposal is a compact image descriptor that combines the state-of-the-art in content-based descriptor extraction with a multi-level, Voronoibased spatial partitioning of each dataset image. The proposed multi-level Voronoi-based encoding uses a spatial hierarchical K-means over interest-point locations, and computes a contentbased descriptor over each cell. In order to reduce the matching complexity with minimal or no sacrifice in retrieval performance: (i) we utilize the tree structure of the spatial hierarchical Kmeans to perform a top-to-bottom pruning for local similarity maxima; (ii) we propose a new image similarity score that combines relevant information from all partition levels into a single measure for similarity; (iii) we combine our proposal with a novel and efficient approach for optimal bit allocation within quantized descriptor representations. By deriving both a Voronoi-based VLAD descriptor (termed as Fast-VVLAD) and a Voronoi-based deep convolutional neural network (CNN) descriptor (termed as Fast-VDCNN), we demonstrate that our Voronoi-based framework is agnostic to the descriptor basis, and can easily be slotted into existing frameworks. Via a range of ROI queries in two standard datasets, it is shown that the Voronoibased descriptors achieve comparable or higher mean Average Precision against conventional grid-based spatial search, while offering more than two-fold reduction in complexity. Finally, beyond ROI queries, we show that Voronoi partitioning improves the geometric invariance of compact CNN descriptors, thereby resulting in competitive performance to the current state-of-theart on whole image retrieval

Deep-Learning-Based Computer- Aided Systems for Breast Cancer Imaging: A Critical Review

[EN] This paper provides a critical review of the literature on deep learning applications in breast tumor diagnosis using ultrasound and mammography images. It also summarizes recent advances in computer-aided diagnosis/detection (CAD) systems, which make use of new deep learning methods to automatically recognize breast images and improve the accuracy of diagnoses made by radiologists. This review is based upon published literature in the past decade (January 2010-January 2020), where we obtained around 250 research articles, and after an eligibility process, 59 articles were presented in more detail. The main findings in the classification process revealed that new DL-CAD methods are useful and effective screening tools for breast cancer, thus reducing the need for manual feature extraction. 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