An extended HD Fluent Analysis of Temporal knowledge in OWL-based clinical Guideline System

The Web Ontology Language (OWL) based clinical guideline system is a kind of clinical decision support system which is often used to assist health professionals to find clinical recommendations from the guidelines and check clinical compliance issues in terms of the guideline recommendations. However, due to some limitations of the current OWL language constructs, temporal knowledge contained in various knowledge domains cannot be directly represented in OWL. As a result, the representation, query and reasoning of temporal knowledge are largely ignored in many OWL-based clinical guideline ontology systems. The aim of this research is to investigate a temporal knowledge modelling method namely “4D fluent” and extend it to represent the temporal constraints contained in clinical guideline recommendations within OWL language constructs. The extended 4D fluent method can model temporal constraints including valid calendar time, interval, duration, repetitive or cyclical temporal constraints and temporal relations such that it can enable reasoning over these temporal constraints in the OWL-based clinical guideline ontology system and overcome the shortcoming of the traditional OWL-based clinical guideline system to an extent

A hybrid NLP & semantic knowledgebase approach for the intelligent exploration of Arabic documents

In the contemporary era, a colossal amount of information is published daily on the Web in the form of articles, documents, reviews, blogs and social media posts. As most of this data is available in the form of unstructured documents, it makes it challenging and timeconsuming to extract non-trivial, previously unknown, and potentially useful knowledge from the published documents. Hence, extracting useful knowledge from unstructured text, i.e., Information Extraction, is becoming an increasingly significant aspect of knowledge discovery. This work focuses on Information Extraction form Arabic unstructured text, which is an especially challenging task as Arabic is a highly inflectional and derivational language. The problem is compounded by the lack of mature tools and advanced research in Arabic Natural Language Processing (NLP) in comparison to European languages for instance. The principal objective of this research work is presenting a comprehensive methodology for integrating domain knowledge with Natural Language Processing techniques that were proven effective in solving most classification problems in order to improve the Information extraction process form online unstructured data. The importance of NLP tools lies in that they play a key role in allowing semantic concept tagging of unstructured text, and so realize the Semantic Web. This work presents a novel rule-based approach that uses linguistic grammar-based techniques to extract Arabic composite names from Arabic text. Our approach uniquely exploits the genitive Arabic grammar rules; in particular, the rules regarding the identification of definite nouns (معرفة) and indefinite nouns (نكرة) to support the process of extracting composite names. Furthermore, this approach does not place any constraints on the length of the Arabic composite name. The results of our experiments show that there are improvement in recognizing Arabic composite names entity in the Arabic language text. Our research also contributes a novel, knowledge-based approach to relation extraction from unstructured Arabic text, which is based on the principles of Functional Discourse Grammar (FDG). We further improve the approach by integrating it with Machine Learning relation classification, resulting in a hybrid relation extraction algorithm that can handle especially complex Arabic sentence structures. The accuracy of our relation classification efforts was extensively evaluated by means of experimental evaluation that evidenced the accuracy of the FDG relation extraction approach and the improvement gained by the Machine Learning integration. The essential NLP algorithms of entity recognition and relation extraction were deployed in a Semantic Knowledge-base that was built from the outset to model the knowledge of the problem domain. The semantic modelling of the knowledgebase aided improving the accuracy of the NLP algorithms by leveraging relevant domain knowledge published in Open Linked Datasets. Moreover, the extracted information was semantically tagged and inserted into the Semantic Knowledge-base, which facilitated building advanced rules to infer new interesting information from the extracted knowledge as well as utilising advanced query mechanisms for intelligently exploring the mined problem domain knowledge

Knowledge-Driven Intelligent Survey Systems Towards Open Science

Open Access via Springer Compact Agreement. Acknowledgements: We are grateful to all of our survey participants, and to Anne Eschenbruecher, Sally Lamond, and Evelyn Williams for their assistance in participant recruitment. We are also grateful to Patrik Bansky for his work on refinement of the survey system.Peer reviewedPublisher PD

Flexible query processing of SPARQL queries

SPARQL is the predominant language for querying RDF data, which is the standard model for representing web data and more specifically Linked Open Data (a collection of heterogeneous connected data). Datasets in RDF form can be hard to query by a user if she does not have a full knowledge of the structure of the dataset. Moreover, many datasets in Linked Data are often extracted from actual web page content which might lead to incomplete or inaccurate data. We extend SPARQL 1.1 with two operators, APPROX and RELAX, previously introduced in the context of regular path queries. Using these operators we are able to support exible querying over the property path queries of SPARQL 1.1. We call this new language SPARQLAR. Using SPARQLAR users are able to query RDF data without fully knowing the structure of a dataset. APPROX and RELAX encapsulate different aspects of query flexibility: finding different answers and finding more answers, respectively. This means that users can access complex and heterogeneous datasets without the need to know precisely how the data is structured. One of the open problems we address is how to combine the APPROX and RELAX operators with a pragmatic language such as SPARQL. We also devise an implementation of a system that evaluates SPARQLAR queries in order to study the performance of the new language. We begin by defining the semantics of SPARQLAR and the complexity of query evaluation. We then present a query processing technique for evaluating SPARQLAR queries based on a rewriting algorithm and prove its soundness and completeness. During the evaluation of a SPARQLAR query we generate multiple SPARQL 1.1 queries that are evaluated against the dataset. Each such query will generate answers with a cost that indicates their distance with respect to the exact form of the original SPARQLAR query. Our prototype implementation incorporates three optimisation techniques that aim to enhance query execution performance: the first optimisation is a pre-computation technique that caches the answers of parts of the queries generated by the rewriting algorithm. These answers will then be reused to avoid the re-execution of those sub-queries. The second optimisation utilises a summary of the dataset to discard queries that it is known will not return any answer. The third optimisation technique uses the query containment concept to discard queries whose answers would be returned by another query at the same or lower cost. We conclude by conducting a performance study of the system on three different RDF datasets: LUBM (Lehigh University Benchmark), YAGO and DBpedia

Ontology Learning from the Arabic Text of the Qur’an: Concepts Identification and Hierarchical Relationships Extraction

Recent developments in ontology learning have highlighted the growing role ontologies play in linguistic and computational research areas such as language teaching and natural language processing. The ever-growing availability of annotations for the Qur’an text has made the acquisition of the ontological knowledge promising. However, the availability of resources and tools for Arabic ontology is not comparable with other languages. Manual ontology development is labour-intensive, time-consuming and it requires knowledge and skills of domain experts. This thesis aims to develop new methods for Ontology learning from the Arabic text of the Qur’an, including concepts identification and hierarchical relationships extraction. The thesis presents a methodology for reducing human intervention in building ontology from Classical Arabic Language of the Qur’an text. The set of concepts, which is a crucial step in ontology learning, was generated based on a set of patterns made of lexical and inflectional information. The concepts were identified based on adapted weighting schema that exploit a combination of knowledge to learn the relevance degree of a term. Statistical, domain-specific knowledge and internal information of Multi-Word Terms (MWTs) were combined to learn the relevance of generated terms. This methodology which represents the major contribution of the thesis was experimentally investigated using different terms generation methods. As a result, we provided the Arabic Qur’anic Terms (AQT) as a training resource for machine learning based term extraction. This thesis also introduces a new approach for hierarchical relations extraction from Arabic text of the Qur’an. A set of hierarchical relations occurring between identified concepts are extracted based on hybrid methods including head-modifier, set of markers for copula construct in Arabic text, referents. We also compared a number of ontology alignment methods for matching ontological bilingual Qur’anic resources. In addition, a multi-dimensional resource named Arabic Qur’anic Database (AQD) about the Qur’an is made for Arabic computational researchers, allowing regular expression query search over the included annotations. The search tool was successfully applied to find instances for a given complex rule made of different combined resources

Neural Probabilistic Logic Programming in Discrete-Continuous Domains

Neural-symbolic AI (NeSy) allows neural networks to exploit symbolic background knowledge in the form of logic. It has been shown to aid learning in the limited data regime and to facilitate inference on out-of-distribution data. Probabilistic NeSy focuses on integrating neural networks with both logic and probability theory, which additionally allows learning under uncertainty. A major limitation of current probabilistic NeSy systems, such as DeepProbLog, is their restriction to finite probability distributions, i.e., discrete random variables. In contrast, deep probabilistic programming (DPP) excels in modelling and optimising continuous probability distributions. Hence, we introduce DeepSeaProbLog, a neural probabilistic logic programming language that incorporates DPP techniques into NeSy. Doing so results in the support of inference and learning of both discrete and continuous probability distributions under logical constraints. Our main contributions are 1) the semantics of DeepSeaProbLog and its corresponding inference algorithm, 2) a proven asymptotically unbiased learning algorithm, and 3) a series of experiments that illustrate the versatility of our approach.Comment: 27 pages, 9 figure

User Interfaces to the Web of Data based on Natural Language Generation

We explore how Virtual Research Environments based on Semantic Web technologies support research interactions with RDF data in various stages of corpus-based analysis, analyze the Web of Data in terms of human readability, derive labels from variables in SPARQL queries, apply Natural Language Generation to improve user interfaces to the Web of Data by verbalizing SPARQL queries and RDF graphs, and present a method to automatically induce RDF graph verbalization templates via distant supervision