Network unfairness in dragonfly topologies

Dragonfly networks arrange network routers in a two-level hierarchy, providing a competitive cost-performance solution for large systems. Non-minimal adaptive routing (adaptive misrouting) is employed to fully exploit the path diversity and increase the performance under adversarial traffic patterns. Network fairness issues arise in the dragonfly for several combinations of traffic pattern, global misrouting and traffic prioritization policy. Such unfairness prevents a balanced use of the resources across the network nodes and degrades severely the performance of any application running on an affected node. This paper reviews the main causes behind network unfairness in dragonflies, including a new adversarial traffic pattern which can easily occur in actual systems and congests all the global output links of a single router. A solution for the observed unfairness is evaluated using age-based arbitration. Results show that age-based arbitration mitigates fairness issues, especially when using in-transit adaptive routing. However, when using source adaptive routing, the saturation of the new traffic pattern interferes with the mechanisms employed to detect remote congestion, and the problem grows with the network size. This makes source adaptive routing in dragonflies based on remote notifications prone to reduced performance, even when using age-based arbitration.Peer ReviewedPostprint (author's final draft

Failure-awareness and dynamic adaptation in data scheduling

Over the years, scientific applications have become more complex and more data intensive. Especially large scale simulations and scientific experiments in areas such as physics, biology, astronomy and earth sciences demand highly distributed resources to satisfy excessive computational requirements. Increasing data requirements and the distributed nature of the resources made I/O the major bottleneck for end-to-end application performance. Existing systems fail to address issues such as reliability, scalability, and efficiency in dealing with wide area data access, retrieval and processing. In this study, we explore data-intensive distributed computing and study challenges in data placement in distributed environments. After analyzing different application scenarios, we develop new data scheduling methodologies and the key attributes for reliability, adaptability and performance optimization of distributed data placement tasks. Inspired by techniques used in microprocessor and operating system architectures, we extend and adapt some of the known low-level data handling and optimization techniques to distributed computing. Two major contributions of this work include (i) a failure-aware data placement paradigm for increased fault-tolerance, and (ii) adaptive scheduling of data placement tasks for improved end-to-end performance. The failure-aware data placement includes early error detection, error classification, and use of this information in scheduling decisions for the prevention of and recovery from possible future errors. The adaptive scheduling approach includes dynamically tuning data transfer parameters over wide area networks for efficient utilization of available network capacity and optimized end-to-end data transfer performance

Optimizing Communication for Massively Parallel Processing

The current trends in high performance computing show that large machines with tens of thousands of processors will soon be readily available. The IBM Bluegene-L machine with 128k processors (which is currently being deployed) is an important step in this direction. In this scenario, it is going to be a significant burden for the programmer to manually scale his applications. This task of scaling involves addressing issues like load-imbalance and communication overhead. In this thesis, we explore several communication optimizations to help parallel applications to easily scale on a large number of processors. We also present automatic runtime techniques to relieve the programmer from the burden of optimizing communication in his applications. This thesis explores processor virtualization to improve communication performance in applications. With processor virtualization, the computation is mapped to virtual processors (VPs). After one VP has finished computation and is waiting for responses to its messages, another VP can compute, thus overlapping communication with computation. This overlap is only effective if the processor overhead of the communication operation is a small fraction of the total communication time. Fortunately, with network interfaces having co-processors, this happens to be true and processor virtualization has a natural advantage on such interconnects. The communication optimizations we present in this thesis, are motivated by applications such as NAMD (a classical molecular dynamics application) and CPAIMD (a quantum chemistry application). Applications like NAMD and CPAIMD consume a fair share of the time available on supercomputers. So, improving their performance would be of great value. We have successfully scaled NAMD to 1TF of peak performance on 3000 processors of PSC Lemieux, using the techniques presented in this thesis. We study both point-to-point communication and collective communication (specifically all-to-all communication). On a large number of processors all-to-all communication can take several milli-seconds to finish. With synchronous collectives defined in MPI, the processor idles while the collective messages are in flight. Therefore, we demonstrate an asynchronous collective communication framework, to let the CPU compute while the all-to-all messages are in flight. We also show that the best strategy for all-to-all communication depends on the message size, number of processors and other dynamic parameters. This suggests that these parameters can be observed at runtime and used to choose the optimal strategy for all-to-all communication. In this thesis, we demonstrate adaptive strategy switching for all-to-all communication. The communication optimization framework presented in this thesis, has been designed to optimize communication in the context of processor virtualization and dynamic migrating objects. We present the streaming strategy to optimize fine grained object-to-object communication. In this thesis, we motivate the need for hardware collectives, as processor based collectives can be delayed by intermediate that processors busy with computation. We explore a next generation interconnect that supports collectives in the switching hardware. We show the performance gains of hardware collectives through synthetic benchmarks

On-Chip Optical Interconnection Networks for Multi/Manycore Architectures

The rapid development of multi/manycore technologies offers the opportunity for highly parallel architectures implemented on a single chip. While the first, low-parallelism multicore products have been based on simple interconnection structures (single bus, very simple crossbar), the emerging highly parallel architectures will require complex, limited-degree interconnection networks. This thesis studies this trend according to the general theory of interconnection structures for parallel machines, and investigates some solutions in terms of performance, cost, fault-tolerance, and run-time support to shared-memory and/or message passing programming mechanisms

Contention-based Nonminimal Adaptive Routing in High-radix Networks

Adaptive routing is an efficient congestion avoidance mechanism for modern Datacenter and HPC networks. Congestion detection traditionally relies on the occupancy of the router queues. However, this approach can hinder performance due to coarse-grain measurements with small buffers, and potential routing oscillations with large buffers. We introduce an alternative mechanism, labelled Contention-Based Adaptive Routing. Our mechanism adapts routing based on an estimation of “network contention”, the simultaneity of traffic flows contending for a network port. Our system employs a set of counters which track the demand for each output port. This exploits path diversity thanks to earlier detection of adversarial traffic patterns, and decouples buffer size and queue occupancy from contention detection. We evaluate our mechanism in a Dragonfly network. Our evaluations show this mechanism achieves optimal latency under uniform traffic and similar to best previous routing mechanisms under adversarial patterns, with immediate adaptation to traffic pattern changes