On the role of metaheuristic optimization in bioinformatics

Metaheuristic algorithms are employed to solve complex and large-scale optimization problems in many different fields, from transportation and smart cities to finance. This paper discusses how metaheuristic algorithms are being applied to solve different optimization problems in the area of bioinformatics. While the text provides references to many optimization problems in the area, it focuses on those that have attracted more interest from the optimization community. Among the problems analyzed, the paper discusses in more detail the molecular docking problem, the protein structure prediction, phylogenetic inference, and different string problems. In addition, references to other relevant optimization problems are also given, including those related to medical imaging or gene selection for classification. From the previous analysis, the paper generates insights on research opportunities for the Operations Research and Computer Science communities in the field of bioinformatics

Simulated Annealing

The book contains 15 chapters presenting recent contributions of top researchers working with Simulated Annealing (SA). Although it represents a small sample of the research activity on SA, the book will certainly serve as a valuable tool for researchers interested in getting involved in this multidisciplinary field. In fact, one of the salient features is that the book is highly multidisciplinary in terms of application areas since it assembles experts from the fields of Biology, Telecommunications, Geology, Electronics and Medicine

Computational intelligence approaches to robotics, automation, and control [Volume guest editors]

No abstract available

Approche robuste pour la segmentation et la classification d’images m´edicales

Image segmentation is a vital process in various fields, including robotics, object recognition, and medical imaging. In medical imaging, accurate segmentation of brain tissues from MRI images is crucial for diagnosing and treating brain disorders such as Alzheimer’s disease, epilepsy, schizophrenia, multiple sclerosis, and cancer. This thesis proposes an automatic fuzzy method for brain MRI segmentation. Firstly, the proposed method aims to improve the efficiency of the Fuzzy C-Means (FCM) algorithm by reducing the need for manual intervention in cluster initialization and determining the number of clusters. For this purpose, we introduce an adaptive splitmerge technique that effectively divides the image into several homogeneous regions using a multi-threshold method based on entropy information. During the merge process, a new distance metric is introduced to combine the regions that are both highly similar within the merged region and effectively separated from others. The cluster centers and numbers obtained from the adaptive split-merge step serve as the initial parameters for the FCM algorithm. The obtained fuzzy partitions are evaluated using a novel proposed validity index. Secondly, we present a novel method to address the challenge of noisy pixels in the FCM algorithm by incorporating spatial information. Specifically, we assign a crucial role to the central pixel in the clustering process, provided it is not corrupted with noise. However, if it is corrupted with noise, its influence is reduced. Furthermore, we propose a novel quantitative metric for replacing the central pixel with one of its neighbors if it can improve the segmentation result in terms of compactness and separation. To evaluate the effectiveness of the proposed method, a thorough comparison with existing clustering techniques is conducted, considering cluster validity functions, segmentation accuracy, and tissue segmentation accuracy. The evaluation comprises comprehensive qualitative and quantitative assessments, providing strong evidence of the superior performance of the proposed approach

Pattern Recognition

A wealth of advanced pattern recognition algorithms are emerging from the interdiscipline between technologies of effective visual features and the human-brain cognition process. Effective visual features are made possible through the rapid developments in appropriate sensor equipments, novel filter designs, and viable information processing architectures. While the understanding of human-brain cognition process broadens the way in which the computer can perform pattern recognition tasks. The present book is intended to collect representative researches around the globe focusing on low-level vision, filter design, features and image descriptors, data mining and analysis, and biologically inspired algorithms. The 27 chapters coved in this book disclose recent advances and new ideas in promoting the techniques, technology and applications of pattern recognition

Multiple Instance Choquet Integral for multiresolution sensor fusion

Imagine you are traveling to Columbia, MO for the first time. On your flight to Columbia, the woman sitting next to you recommended a bakery by a large park with a big yellow umbrella outside. After you land, you need directions to the hotel from the airport. Suppose you are driving a rental car, you will need to park your car at a parking lot or a parking structure. After a good night's sleep in the hotel, you may decide to go for a run in the morning on the closest trail and stop by that recommended bakery under a big yellow umbrella. It would be helpful in the course of completing all these tasks to accurately distinguish the proper car route and walking trail, find a parking lot, and pinpoint the yellow umbrella. Satellite imagery and other geo-tagged data such as Open Street Maps provide effective information for this goal. Open Street Maps can provide road information and suggest bakery within a five-mile radius. The yellow umbrella is a distinctive color and, perhaps, is made of a distinctive material that can be identified from a hyperspectral camera. Open Street Maps polygons are tagged with information such as "parking lot" and "sidewalk." All these information can and should be fused to help identify and offer better guidance on the tasks you are completing. Supervised learning methods generally require precise labels for each training data point. It is hard (and probably at an extra cost) to manually go through and label each pixel in the training imagery. GPS coordinates cannot always be fully trusted as a GPS device may only be accurate to the level of several pixels. In many cases, it is practically infeasible to obtain accurate pixel-level training labels to perform fusion for all the imagery and maps available. Besides, the training data may come in a variety of data types, such as imagery or as a 3D point cloud. The imagery may have different resolutions, scales and, even, coordinate systems. Previous fusion methods are generally only limited to data mapped to the same pixel grid, with accurate labels. Furthermore, most fusion methods are restricted to only two sources, even if certain methods, such as pan-sharpening, can deal with different geo-spatial types or data of different resolution. It is, therefore, necessary and important, to come up with a way to perform fusion on multiple sources of imagery and map data, possibly with different resolutions and of different geo-spatial types with consideration of uncertain labels. I propose a Multiple Instance Choquet Integral framework for multi-resolution multisensor fusion with uncertain training labels. The Multiple Instance Choquet Integral (MICI) framework addresses uncertain training labels and performs both classification and regression. Three classifier fusion models, i.e. the noisy-or, min-max, and generalized-mean models, are derived under MICI. The Multi-Resolution Multiple Instance Choquet Integral (MR-MICI) framework is built upon the MICI framework and further addresses multiresolution in the fusion sources in addition to the uncertainty in training labels. For both MICI and MR-MICI, a monotonic normalized fuzzy measure is learned to be used with the Choquet integral to perform two-class classifier fusion given bag-level training labels. An optimization scheme based on the evolutionary algorithm is used to optimize the models proposed. For regression problems where the desired prediction is real-valued, the primary instance assumption is adopted. The algorithms are applied to target detection, regression and scene understanding applications. Experiments are conducted on the fusion of remote sensing data (hyperspectral and LiDAR) over the campus of University of Southern Mississippi - Gulfpark. Clothpanel sub-pixel and super-pixel targets were placed on campus with varying levels of occlusion and the proposed algorithms can successfully detect the targets in the scene. A semi-supervised approach is developed to automatically generate training labels based on data from Google Maps, Google Earth and Open Street Map. Based on such training labels with uncertainty, the proposed algorithms can also identify materials on campus for scene understanding, such as road, buildings, sidewalks, etc. In addition, the algorithms are used for weed detection and real-valued crop yield prediction experiments based on remote sensing data that can provide information for agricultural applications.Includes biblographical reference

Computational intelligence approaches to robotics, automation, and control [Volume guest editors]

No abstract available

Applied Metaheuristic Computing

For decades, Applied Metaheuristic Computing (AMC) has been a prevailing optimization technique for tackling perplexing engineering and business problems, such as scheduling, routing, ordering, bin packing, assignment, facility layout planning, among others. This is partly because the classic exact methods are constrained with prior assumptions, and partly due to the heuristics being problem-dependent and lacking generalization. AMC, on the contrary, guides the course of low-level heuristics to search beyond the local optimality, which impairs the capability of traditional computation methods. This topic series has collected quality papers proposing cutting-edge methodology and innovative applications which drive the advances of AMC

Contemporary Robotics

This book book is a collection of 18 chapters written by internationally recognized experts and well-known professionals of the field. Chapters contribute to diverse facets of contemporary robotics and autonomous systems. The volume is organized in four thematic parts according to the main subjects, regarding the recent advances in the contemporary robotics. The first thematic topics of the book are devoted to the theoretical issues. This includes development of algorithms for automatic trajectory generation using redudancy resolution scheme, intelligent algorithms for robotic grasping, modelling approach for reactive mode handling of flexible manufacturing and design of an advanced controller for robot manipulators. The second part of the book deals with different aspects of robot calibration and sensing. This includes a geometric and treshold calibration of a multiple robotic line-vision system, robot-based inline 2D/3D quality monitoring using picture-giving and laser triangulation, and a study on prospective polymer composite materials for flexible tactile sensors. The third part addresses issues of mobile robots and multi-agent systems, including SLAM of mobile robots based on fusion of odometry and visual data, configuration of a localization system by a team of mobile robots, development of generic real-time motion controller for differential mobile robots, control of fuel cells of mobile robots, modelling of omni-directional wheeled-based robots, building of hunter- hybrid tracking environment, as well as design of a cooperative control in distributed population-based multi-agent approach. The fourth part presents recent approaches and results in humanoid and bioinspirative robotics. It deals with design of adaptive control of anthropomorphic biped gait, building of dynamic-based simulation for humanoid robot walking, building controller for perceptual motor control dynamics of humans and biomimetic approach to control mechatronic structure using smart materials