Proceedings of the Second International Workshop on HyperTransport Research and Applications (WHTRA2011)

Proceedings of the Second International Workshop on HyperTransport Research and Applications (WHTRA2011) which was held Feb. 9th 2011 in Mannheim, Germany. The Second International Workshop for Research on HyperTransport is an international high quality forum for scientists, researches and developers working in the area of HyperTransport. This includes not only developments and research in HyperTransport itself, but also work which is based on or enabled by HyperTransport. HyperTransport (HT) is an interconnection technology which is typically used as system interconnect in modern computer systems, connecting the CPUs among each other and with the I/O bridges. Primarily designed as interconnect between high performance CPUs it provides an extremely low latency, high bandwidth and excellent scalability. The definition of the HTX connector allows the use of HT even for add-in cards. In opposition to other peripheral interconnect technologies like PCI-Express no protocol conversion or intermediate bridging is necessary. HT is a direct connection between device and CPU with minimal latency. Another advantage is the possibility of cache coherent devices. Because of these properties HT is of high interest for high performance I/O like networking and storage, but also for co-processing and acceleration based on ASIC or FPGA technologies. In particular acceleration sees a resurgence of interest today. One reason is the possibility to reduce power consumption by the use of accelerators. In the area of parallel computing the low latency communication allows for fine grain communication schemes and is perfectly suited for scalable systems. Summing up, HT technology offers key advantages and great performance to any research aspect related to or based on interconnects. For more information please consult the workshop website (http://whtra.uni-hd.de)

System-level Prototyping with HyperTransport

The complexity of computer systems continues to increase. Emulation of proposed subsystems is one way to manage this growing complexity when evaluating the performance of proposed architectures. HyperTransport allows researchers to connect directly to microprocessors with FPGAs. This enables the emulation of novel memory hierarchies, non-volatile memory designs, coprocessors, and other architectural changes, combined with an existing system

Achieving High Speed CFD simulations: Optimization, Parallelization, and FPGA Acceleration for the unstructured DLR TAU Code

Today, large scale parallel simulations are fundamental tools to handle complex problems. The number of processors in current computation platforms has been recently increased and therefore it is necessary to optimize the application performance and to enhance the scalability of massively-parallel systems. In addition, new heterogeneous architectures, combining conventional processors with specific hardware, like FPGAs, to accelerate the most time consuming functions are considered as a strong alternative to boost the performance. In this paper, the performance of the DLR TAU code is analyzed and optimized. The improvement of the code efficiency is addressed through three key activities: Optimization, parallelization and hardware acceleration. At first, a profiling analysis of the most time-consuming processes of the Reynolds Averaged Navier Stokes flow solver on a three-dimensional unstructured mesh is performed. Then, a study of the code scalability with new partitioning algorithms are tested to show the most suitable partitioning algorithms for the selected applications. Finally, a feasibility study on the application of FPGAs and GPUs for the hardware acceleration of CFD simulations is presented

Firmware and gateway for the ACE1 reconfigurable accelerator card

This thesis describes the continued work on the in-house designed FPGA based co-processor daughtercard referred to as ACE1. The aim: to create an ecosystem incorporating firmware, bootstrapping code, drivers and a development environment to create a seamless environment. Challenges in setting up and debugging the interface that connects the coprocessor daughtercard to the host server include: problems with the power network, the edge connectors and timing problems with the primary protocol which prevented host-based communications. The options include allowing the daughtercard to function in a stand-alone fashion and we present a gateware solution that allows users to select from a number of alternatives for each of the layers in the Open Systems Interconnect networking model

Scalability of broadcast performance in wireless network-on-chip

Networks-on-Chip (NoCs) are currently the paradigm of choice to interconnect the cores of a chip multiprocessor. However, conventional NoCs may not suffice to fulfill the on-chip communication requirements of processors with hundreds or thousands of cores. The main reason is that the performance of such networks drops as the number of cores grows, especially in the presence of multicast and broadcast traffic. This not only limits the scalability of current multiprocessor architectures, but also sets a performance wall that prevents the development of architectures that generate moderate-to-high levels of multicast. In this paper, a Wireless Network-on-Chip (WNoC) where all cores share a single broadband channel is presented. Such design is conceived to provide low latency and ordered delivery for multicast/broadcast traffic, in an attempt to complement a wireline NoC that will transport the rest of communication flows. To assess the feasibility of this approach, the network performance of WNoC is analyzed as a function of the system size and the channel capacity, and then compared to that of wireline NoCs with embedded multicast support. Based on this evaluation, preliminary results on the potential performance of the proposed hybrid scheme are provided, together with guidelines for the design of MAC protocols for WNoC.Peer ReviewedPostprint (published version

Accelerated Financial Applications through Specialized Hardware, FPGA

This project will investigate Field Programmable Gate Array (FPGA) technology in financial applications. FPGA implementation in high performance computing is still in its infancy. Certain companies like XtremeData inc. advertized speed improvements of 50 to 1000 times for DNA sequencing using FPGAs, while using an FPGA as a coprocessor to handle specific tasks provides two to three times more processing power. FPGA technology increases performance by parallelizing calculations. This project will specifically address speed and accuracy improvements of both fundamental and transcendental functions when implemented using FPGA technology. The results of this project will lead to a series of recommendations for effective utilization of FPGA technology in financial applications

A reconfigurable accelerator card for high performance computing

Includes abstract.Includes bibliographical references (leaves 68-70).This thesis describes the design, implementation, and testing of a reconfigurable accelerator card. The goal of the project was to provide a hardware platform for future students to carry out research into reconfigurable computing. Our accelerator design is an expansion card for a traditional Von Neumann host machine, and contains two field-programmable gate arrays. By inserting the card into a host machine, intrinsically parallel processing tasks can be exported to the FPGAs. This is similar to the way in which video game rendering tasks can be exported to the GFC on a graphics accelerator. We show how an FPGA is a suitable processing element, in terms of performance per watt, for many computing tasks. We set out to design and build a reconfigurable card that harnessed the latest FPGAs and fastest available I/O interfaces. The resultant design is one which can run within a host machine, in an array of host machines, or as a stand-alone processing node

Neural Simulations on Multi-Core Architectures

Neuroscience is witnessing increasing knowledge about the anatomy and electrophysiological properties of neurons and their connectivity, leading to an ever increasing computational complexity of neural simulations. At the same time, a rather radical change in personal computer technology emerges with the establishment of multi-cores: high-density, explicitly parallel processor architectures for both high performance as well as standard desktop computers. This work introduces strategies for the parallelization of biophysically realistic neural simulations based on the compartmental modeling technique and results of such an implementation, with a strong focus on multi-core architectures and automation, i.e. user-transparent load balancing

Main memory and cache performance of Intel Sandy

Abstract Application performance on multicore processors is seldom constrained by the speed of floating point or integer units. Much more often, limitations are caused by the memory subsystem, particularly shared resources such as last level caches or memory controllers. Measuring, predicting and modeling memory performance becomes a steeper challenge with each new processor generation due to the growing complexity and core count. We tackle the important aspect of measuring and understanding undocumented memory performance numbers in order to create valuable insight into microprocessor details. For this, we build upon a set of sophisticated benchmarks that support latency and bandwidth measurements to arbitrary locations in the memory subsystem. These benchmarks are extended to support AVX instructions for bandwidth measurements and to integrate the coherence states (O)wned and (F)orward. We then use these benchmarks to perform an indepth analysis of current ccNUMA multiprocessor systems with Intel (Sandy Bridge-EP) and AMD (Bulldozer) processors. Using our benchmarks we present fundamental memory performance data and illustrate performance-relevant architectural properties of both designs

Cross-core Microarchitectural Attacks and Countermeasures

In the last decade, multi-threaded systems and resource sharing have brought a number of technologies that facilitate our daily tasks in a way we never imagined. Among others, cloud computing has emerged to offer us powerful computational resources without having to physically acquire and install them, while smartphones have almost acquired the same importance desktop computers had a decade ago. This has only been possible thanks to the ever evolving performance optimization improvements made to modern microarchitectures that efficiently manage concurrent usage of hardware resources. One of the aforementioned optimizations is the usage of shared Last Level Caches (LLCs) to balance different CPU core loads and to maintain coherency between shared memory blocks utilized by different cores. The latter for instance has enabled concurrent execution of several processes in low RAM devices such as smartphones. Although efficient hardware resource sharing has become the de-facto model for several modern technologies, it also poses a major concern with respect to security. Some of the concurrently executed co-resident processes might in fact be malicious and try to take advantage of hardware proximity. New technologies usually claim to be secure by implementing sandboxing techniques and executing processes in isolated software environments, called Virtual Machines (VMs). However, the design of these isolated environments aims at preventing pure software- based attacks and usually does not consider hardware leakages. In fact, the malicious utilization of hardware resources as covert channels might have severe consequences to the privacy of the customers. Our work demonstrates that malicious customers of such technologies can utilize the LLC as the covert channel to obtain sensitive information from a co-resident victim. We show that the LLC is an attractive resource to be targeted by attackers, as it offers high resolution and, unlike previous microarchitectural attacks, does not require core-colocation. Particularly concerning are the cases in which cryptography is compromised, as it is the main component of every security solution. In this sense, the presented work does not only introduce three attack variants that can be applicable in different scenarios, but also demonstrates the ability to recover cryptographic keys (e.g. AES and RSA) and TLS session messages across VMs, bypassing sandboxing techniques. Finally, two countermeasures to prevent microarchitectural attacks in general and LLC attacks in particular from retrieving fine- grain information are presented. Unlike previously proposed countermeasures, ours do not add permanent overheads in the system but can be utilized as preemptive defenses. The first identifies leakages in cryptographic software that can potentially lead to key extraction, and thus, can be utilized by cryptographic code designers to ensure the sanity of their libraries before deployment. The second detects microarchitectural attacks embedded into innocent-looking binaries, preventing them from being posted in official application repositories that usually have the full trust of the customer