Automatic generation of hardware Tree Classifiers

Machine Learning is growing in popularity and spreading across different fields for various applications. Due to this trend, machine learning algorithms use different hardware platforms and are being experimented to obtain high test accuracy and throughput. FPGAs are well-suited hardware platform for machine learning because of its re-programmability and lower power consumption. Programming using FPGAs for machine learning algorithms requires substantial engineering time and effort compared to software implementation. We propose a software assisted design flow to program FPGA for machine learning algorithms using our hardware library. The hardware library is highly parameterized and it accommodates Tree Classifiers. As of now, our library consists of the components required to implement decision trees and random forests. The whole automation is wrapped around using a python script which takes you from the first step of having a dataset and design choices to the last step of having a hardware descriptive code for the trained machine learning model

Algorithms and architectures for MCMC acceleration in FPGAs

Markov Chain Monte Carlo (MCMC) is a family of stochastic algorithms which are used to draw random samples from arbitrary probability distributions. This task is necessary to solve a variety of problems in Bayesian modelling, e.g. prediction and model comparison, making MCMC a fundamental tool in modern statistics. Nevertheless, due to the increasing complexity of Bayesian models, the explosion in the amount of data they need to handle and the computational intensity of many MCMC algorithms, performing MCMC-based inference is often impractical in real applications. This thesis tackles this computational problem by proposing Field Programmable Gate Array (FPGA) architectures for accelerating MCMC and by designing novel MCMC algorithms and optimization methodologies which are tailored for FPGA implementation. The contributions of this work include: 1) An FPGA architecture for the Population-based MCMC algorithm, along with two modified versions of the algorithm which use custom arithmetic precision in large parts of the implementation without introducing error in the output. Mapping the two modified versions to an FPGA allows for more parallel modules to be instantiated in the same chip area. 2) An FPGA architecture for the Particle MCMC algorithm, along with a novel algorithm which combines Particle MCMC and Population-based MCMC to tackle multi-modal distributions. A proposed FPGA architecture for the new algorithm achieves higher datapath utilization than the Particle MCMC architecture. 3) A generic method to optimize the arithmetic precision of any MCMC algorithm that is implemented on FPGAs. The method selects the minimum precision among a given set of precisions, while guaranteeing a user-defined bound on the output error. By applying the above techniques to large-scale Bayesian problems, it is shown that significant speedups (one or two orders of magnitude) are possible compared to state-of-the-art MCMC algorithms implemented on CPUs and GPUs, opening the way for handling complex statistical analyses in the era of ubiquitous, ever-increasing data.Open Acces

AxOMaP: Designing FPGA-based Approximate Arithmetic Operators using Mathematical Programming

With the increasing application of machine learning (ML) algorithms in embedded systems, there is a rising necessity to design low-cost computer arithmetic for these resource-constrained systems. As a result, emerging models of computation, such as approximate and stochastic computing, that leverage the inherent error-resilience of such algorithms are being actively explored for implementing ML inference on resource-constrained systems. Approximate computing (AxC) aims to provide disproportionate gains in the power, performance, and area (PPA) of an application by allowing some level of reduction in its behavioral accuracy (BEHAV). Using approximate operators (AxOs) for computer arithmetic forms one of the more prevalent methods of implementing AxC. AxOs provide the additional scope for finer granularity of optimization, compared to only precision scaling of computer arithmetic. To this end, designing platform-specific and cost-efficient approximate operators forms an important research goal. Recently, multiple works have reported using AI/ML-based approaches for synthesizing novel FPGA-based AxOs. However, most of such works limit usage of AI/ML to designing ML-based surrogate functions used during iterative optimization processes. To this end, we propose a novel data analysis-driven mathematical programming-based approach to synthesizing approximate operators for FPGAs. Specifically, we formulate mixed integer quadratically constrained programs based on the results of correlation analysis of the characterization data and use the solutions to enable a more directed search approach for evolutionary optimization algorithms. Compared to traditional evolutionary algorithms-based optimization, we report up to 21% improvement in the hypervolume, for joint optimization of PPA and BEHAV, in the design of signed 8-bit multipliers.Comment: 23 pages, Under review at ACM TRET

Acceleration of MCMC-based algorithms using reconfigurable logic

Monte Carlo (MC) methods such as Markov chain Monte Carlo (MCMC) and sequential Monte Carlo (SMC) have emerged as popular tools to sample from high dimensional probability distributions. Because these algorithms can draw samples effectively from arbitrary distributions in Bayesian inference problems, they have been widely used in a range of statistical applications. However, they are often too time consuming due to the prohibitive costly likelihood evaluations, thus they cannot be practically applied to complex models with large-scale datasets. Currently, the lack of sufficiently fast MCMC methods limits their applicability in many modern applications such as genetics and machine learning, and this situation is bound to get worse given the increasing adoption of big data in many fields. The objective of this dissertation is to develop, design and build efficient hardware architectures for MCMC-based algorithms on Field Programmable Gate Arrays (FPGAs), and thereby bring them closer to practical applications. The contributions of this work include: 1) Novel parallel FPGA architectures of the state-of-the-art resampling algorithms for SMC methods. The proposed architectures allow for parallel implementations and thus improve the processing speed. 2) A novel mixed precision MCMC algorithm, along with a tailored FPGA architecture. The proposed design allows for more parallelism and achieves low latency for a given set of hardware resources, while still guaranteeing unbiased estimates. 3) A new variant of subsampling MCMC method based on unequal probability sampling, along with a highly optimized FPGA architecture. The proposed method significantly reduces off-chip memory access and achieves high accuracy in estimates for a given time budget. This work has resulted in the development of hardware accelerators of MCMC and SMC for very large-scale Bayesian tasks by applying the above techniques. Notable speed improvements compared to the respective state-of-the-art CPU and GPU implementations have been achieved in this work.Open Acces

Analysis and Test of the Effects of Single Event Upsets Affecting the Configuration Memory of SRAM-based FPGAs

SRAM-based FPGAs are increasingly relevant in a growing number of safety-critical application fields, ranging from automotive to aerospace. These application fields are characterized by a harsh radiation environment that can cause the occurrence of Single Event Upsets (SEUs) in digital devices. These faults have particularly adverse effects on SRAM-based FPGA systems because not only can they temporarily affect the behaviour of the system by changing the contents of flip-flops or memories, but they can also permanently change the functionality implemented by the system itself, by changing the content of the configuration memory. Designing safety-critical applications requires accurate methodologies to evaluate the system’s sensitivity to SEUs as early as possible during the design process. Moreover it is necessary to detect the occurrence of SEUs during the system life-time. To this purpose test patterns should be generated during the design process, and then applied to the inputs of the system during its operation. In this thesis we propose a set of software tools that could be used by designers of SRAM-based FPGA safety-critical applications to assess the sensitivity to SEUs of the system and to generate test patterns for in-service testing. The main feature of these tools is that they implement a model of SEUs affecting the configuration bits controlling the logic and routing resources of an FPGA device that has been demonstrated to be much more accurate than the classical stuck-at and open/short models, that are commonly used in the analysis of faults in digital devices. By keeping this accurate fault model into account, the proposed tools are more accurate than similar academic and commercial tools today available for the analysis of faults in digital circuits, that do not take into account the features of the FPGA technology.. In particular three tools have been designed and developed: (i) ASSESS: Accurate Simulator of SEuS affecting the configuration memory of SRAM-based FPGAs, a simulator of SEUs affecting the configuration memory of an SRAM-based FPGA system for the early assessment of the sensitivity to SEUs; (ii) UA2TPG: Untestability Analyzer and Automatic Test Pattern Generator for SEUs Affecting the Configuration Memory of SRAM-based FPGAs, a static analysis tool for the identification of the untestable SEUs and for the automatic generation of test patterns for in-service testing of the 100% of the testable SEUs; and (iii) GABES: Genetic Algorithm Based Environment for SEU Testing in SRAM-FPGAs, a Genetic Algorithm-based Environment for the generation of an optimized set of test patterns for in-service testing of SEUs. The proposed tools have been applied to some circuits from the ITC’99 benchmark. The results obtained from these experiments have been compared with results obtained by similar experiments in which we considered the stuck-at fault model, instead of the more accurate model for SEUs. From the comparison of these experiments we have been able to verify that the proposed software tools are actually more accurate than similar tools today available. In particular the comparison between results obtained using ASSESS with those obtained by fault injection has shown that the proposed fault simulator has an average error of 0:1% and a maximum error of 0:5%, while using a stuck-at fault simulator the average error with respect of the fault injection experiment has been 15:1% with a maximum error of 56:2%. Similarly the comparison between the results obtained using UA2TPG for the accurate SEU model, with the results obtained for stuck-at faults has shown an average difference of untestability of 7:9% with a maximum of 37:4%. Finally the comparison between fault coverages obtained by test patterns generated for the accurate model of SEUs and the fault coverages obtained by test pattern designed for stuck-at faults, shows that the former detect the 100% of the testable faults, while the latter reach an average fault coverage of 78:9%, with a minimum of 54% and a maximum of 93:16%

A Comprehensive Workflow for General-Purpose Neural Modeling with Highly Configurable Neuromorphic Hardware Systems

In this paper we present a methodological framework that meets novel requirements emerging from upcoming types of accelerated and highly configurable neuromorphic hardware systems. We describe in detail a device with 45 million programmable and dynamic synapses that is currently under development, and we sketch the conceptual challenges that arise from taking this platform into operation. More specifically, we aim at the establishment of this neuromorphic system as a flexible and neuroscientifically valuable modeling tool that can be used by non-hardware-experts. We consider various functional aspects to be crucial for this purpose, and we introduce a consistent workflow with detailed descriptions of all involved modules that implement the suggested steps: The integration of the hardware interface into the simulator-independent model description language PyNN; a fully automated translation between the PyNN domain and appropriate hardware configurations; an executable specification of the future neuromorphic system that can be seamlessly integrated into this biology-to-hardware mapping process as a test bench for all software layers and possible hardware design modifications; an evaluation scheme that deploys models from a dedicated benchmark library, compares the results generated by virtual or prototype hardware devices with reference software simulations and analyzes the differences. The integration of these components into one hardware-software workflow provides an ecosystem for ongoing preparative studies that support the hardware design process and represents the basis for the maturity of the model-to-hardware mapping software. The functionality and flexibility of the latter is proven with a variety of experimental results

Design synthesis for dynamically reconfigurable logic systems

Dynamic reconfiguration of logic circuits has been a research problem for over four decades. While applications using logic reconfiguration in practical scenarios have been demonstrated, the design of these systems has proved to be a difficult process demanding the skills of an experienced reconfigurable logic design expert. This thesis proposes an automatic synthesis method which relieves designers of some of the difficulties associated with designing partially dynamically reconfigurable systems. A new design abstraction model for reconfigurable systems is proposed in order to support design exploration using the presented method. Given an input behavioural model, a technology server and a set of design constraints, the method will generate a reconfigurable design solution in the form of a 3D floorplan and a configuration schedule. The approach makes use of genetic algorithms. It facilitates global optimisation to accommodate multiple design objectives common in reconfigurable system design, while making realistic estimates of configuration overheads and of the potential for resource sharing between configurations. A set of custom evolutionary operators has been developed to cope with a multiple-objective search space. Furthermore, the application of a simulation technique verifying the lll results of such an automatic exploration is outlined in the thesis. The qualities of the proposed method are evaluated using a set of benchmark designs taking data from a real reconfigurable logic technology. Finally, some extensions to the proposed method and possible research directions are discussed

An Adaptive Modular Redundancy Technique to Self-regulate Availability, Area, and Energy Consumption in Mission-critical Applications

As reconfigurable devices\u27 capacities and the complexity of applications that use them increase, the need for self-reliance of deployed systems becomes increasingly prominent. A Sustainable Modular Adaptive Redundancy Technique (SMART) composed of a dual-layered organic system is proposed, analyzed, implemented, and experimentally evaluated. SMART relies upon a variety of self-regulating properties to control availability, energy consumption, and area used, in dynamically-changing environments that require high degree of adaptation. The hardware layer is implemented on a Xilinx Virtex-4 Field Programmable Gate Array (FPGA) to provide self-repair using a novel approach called a Reconfigurable Adaptive Redundancy System (RARS). The software layer supervises the organic activities within the FPGA and extends the self-healing capabilities through application-independent, intrinsic, evolutionary repair techniques to leverage the benefits of dynamic Partial Reconfiguration (PR). A SMART prototype is evaluated using a Sobel edge detection application. This prototype is shown to provide sustainability for stressful occurrences of transient and permanent fault injection procedures while still reducing energy consumption and area requirements. An Organic Genetic Algorithm (OGA) technique is shown capable of consistently repairing hard faults while maintaining correct edge detector outputs, by exploiting spatial redundancy in the reconfigurable hardware. A Monte Carlo driven Continuous Markov Time Chains (CTMC) simulation is conducted to compare SMART\u27s availability to industry-standard Triple Modular Technique (TMR) techniques. Based on nine use cases, parameterized with realistic fault and repair rates acquired from publically available sources, the results indicate that availability is significantly enhanced by the adoption of fast repair techniques targeting aging-related hard-faults. Under harsh environments, SMART is shown to improve system availability from 36.02% with lengthy repair techniques to 98.84% with fast ones. This value increases to five nines (99.9998%) under relatively more favorable conditions. Lastly, SMART is compared to twenty eight standard TMR benchmarks that are generated by the widely-accepted BL-TMR tools. Results show that in seven out of nine use cases, SMART is the recommended technique, with power savings ranging from 22% to 29%, and area savings ranging from 17% to 24%, while still maintaining the same level of availability

A Survey of Processing Systems for Phylogenetics and Population Genetics

The COVID-19 pandemic brought Bioinformatics into the spotlight, revealing that several existing methods, algorithms, and tools were not well prepared to handle large amounts of genomic data efficiently. This led to prohibitively long execution times and the need to reduce the extent of analyses to obtain results in a reasonable amount of time. In this survey, we review available high-performance computing and hardware-accelerated systems based on FPGA and GPU technology. Optimized and hardware-accelerated systems can conduct more thorough analyses considerably faster than pure software implementations, allowing to reach important conclusions in a timely manner to drive scientific discoveries. We discuss the reasons that are currently hindering high-performance solutions from being widely deployed in real-world biological analyses and describe a research direction that can pave the way to enable this