Large induced subgraphs via triangulations and CMSO

We obtain an algorithmic meta-theorem for the following optimization problem. Let \phi\ be a Counting Monadic Second Order Logic (CMSO) formula and t be an integer. For a given graph G, the task is to maximize |X| subject to the following: there is a set of vertices F of G, containing X, such that the subgraph G[F] induced by F is of treewidth at most t, and structure (G[F],X) models \phi. Some special cases of this optimization problem are the following generic examples. Each of these cases contains various problems as a special subcase: 1) "Maximum induced subgraph with at most l copies of cycles of length 0 modulo m", where for fixed nonnegative integers m and l, the task is to find a maximum induced subgraph of a given graph with at most l vertex-disjoint cycles of length 0 modulo m. 2) "Minimum \Gamma-deletion", where for a fixed finite set of graphs \Gamma\ containing a planar graph, the task is to find a maximum induced subgraph of a given graph containing no graph from \Gamma\ as a minor. 3) "Independent \Pi-packing", where for a fixed finite set of connected graphs \Pi, the task is to find an induced subgraph G[F] of a given graph G with the maximum number of connected components, such that each connected component of G[F] is isomorphic to some graph from \Pi. We give an algorithm solving the optimization problem on an n-vertex graph G in time O(#pmc n^{t+4} f(t,\phi)), where #pmc is the number of all potential maximal cliques in G and f is a function depending of t and \phi\ only. We also show how a similar running time can be obtained for the weighted version of the problem. Pipelined with known bounds on the number of potential maximal cliques, we deduce that our optimization problem can be solved in time O(1.7347^n) for arbitrary graphs, and in polynomial time for graph classes with polynomial number of minimal separators

On large-scale diagonalization techniques for the Anderson model of localization

We propose efficient preconditioning algorithms for an eigenvalue problem arising in quantum physics, namely the computation of a few interior eigenvalues and their associated eigenvectors for large-scale sparse real and symmetric indefinite matrices of the Anderson model of localization. We compare the Lanczos algorithm in the 1987 implementation by Cullum and Willoughby with the shift-and-invert techniques in the implicitly restarted Lanczos method and in the Jacobi–Davidson method. Our preconditioning approaches for the shift-and-invert symmetric indefinite linear system are based on maximum weighted matchings and algebraic multilevel incomplete LDLT factorizations. These techniques can be seen as a complement to the alternative idea of using more complete pivoting techniques for the highly ill-conditioned symmetric indefinite Anderson matrices. We demonstrate the effectiveness and the numerical accuracy of these algorithms. Our numerical examples reveal that recent algebraic multilevel preconditioning solvers can accelerate the computation of a large-scale eigenvalue problem corresponding to the Anderson model of localization by several orders of magnitude

Weighted counting of solutions to sparse systems of equations

Given complex numbers $w_1, \ldots, w_n$, we define the weight $w(X)$ of a set $X$ of 0-1 vectors as the sum of $w_1^{x_1} \cdots w_n^{x_n}$ over all vectors $(x_1, \ldots, x_n)$ in $X$. We present an algorithm, which for a set $X$ defined by a system of homogeneous linear equations with at most $r$ variables per equation and at most $c$ equations per variable, computes $w(X)$ within relative error $\epsilon >0$ in $(rc)^{O(\ln n-\ln \epsilon)}$ time provided $|w_j| \leq \beta (r \sqrt{c})^{-1}$ for an absolute constant $\beta >0$ and all $j=1, \ldots, n$. A similar algorithm is constructed for computing the weight of a linear code over ${\Bbb F}_p$. Applications include counting weighted perfect matchings in hypergraphs, counting weighted graph homomorphisms, computing weight enumerators of linear codes with sparse code generating matrices, and computing the partition functions of the ferromagnetic Potts model at low temperatures and of the hard-core model at high fugacity on biregular bipartite graphs.Comment: The exposition is improved, a couple of inaccuracies correcte

Counting Carambolas

We give upper and lower bounds on the maximum and minimum number of geometric configurations of various kinds present (as subgraphs) in a triangulation of $n$ points in the plane. Configurations of interest include \emph{convex polygons}, \emph{star-shaped polygons} and \emph{monotone paths}. We also consider related problems for \emph{directed} planar straight-line graphs.Comment: update reflects journal version, to appear in Graphs and Combinatorics; 18 pages, 13 figure

Generation and Properties of Snarks

For many of the unsolved problems concerning cycles and matchings in graphs it is known that it is sufficient to prove them for \emph{snarks}, the class of nontrivial 3-regular graphs which cannot be 3-edge coloured. In the first part of this paper we present a new algorithm for generating all non-isomorphic snarks of a given order. Our implementation of the new algorithm is 14 times faster than previous programs for generating snarks, and 29 times faster for generating weak snarks. Using this program we have generated all non-isomorphic snarks on $n\leq 36$ vertices. Previously lists up to $n=28$ vertices have been published. In the second part of the paper we analyze the sets of generated snarks with respect to a number of properties and conjectures. We find that some of the strongest versions of the cycle double cover conjecture hold for all snarks of these orders, as does Jaeger's Petersen colouring conjecture, which in turn implies that Fulkerson's conjecture has no small counterexamples. In contrast to these positive results we also find counterexamples to eight previously published conjectures concerning cycle coverings and the general cycle structure of cubic graphs.Comment: Submitted for publication V2: various corrections V3: Figures updated and typos corrected. This version differs from the published one in that the Arxiv-version has data about the automorphisms of snarks; Journal of Combinatorial Theory. Series B. 201

Network-Based Vertex Dissolution

We introduce a graph-theoretic vertex dissolution model that applies to a number of redistribution scenarios such as gerrymandering in political districting or work balancing in an online situation. The central aspect of our model is the deletion of certain vertices and the redistribution of their load to neighboring vertices in a completely balanced way. We investigate how the underlying graph structure, the knowledge of which vertices should be deleted, and the relation between old and new vertex loads influence the computational complexity of the underlying graph problems. Our results establish a clear borderline between tractable and intractable cases.Comment: Version accepted at SIAM Journal on Discrete Mathematic