Using Multibeam Echosounders for Hydrographic Surveying in the Water Column: Estimating Wreck Least Depths

Wreck superstructure can extend into the water column and pose a danger to navigation if the least depth is not accurately portrayed to mariners. NOAA has several methods available to acquire a wreck least depth: lead line, wire drag, diver investigation, side scan shadow length, single beam bathymetry, and multibeam bathymetry. Previous studies have demonstrated that the bottom detection algorithm can fail to locate a wreck mast that is evident in the water column data. Modern multibeam sonars can record water column data in addition to bottom detections. NOAA’s current Hydrographic Specifications do not require water column collection; the best practice is to collect additional bathymetry data during wreck developments. Several multibeam bathymetry and multibeam water column datasets collected by NOAA vessels are evaluated and the wreck least depth results are compared to previous international field trials. A workflow to extract filtered and sidelobe suppressed water column point clouds is presented using currently available software packages. This paper explores the challenges encountered with water column data collection and processing and finds that analysis of water column data provides an improvement to finding wreck least depths, in some cases

The vertical distribution and biological transport of marine microplastics across the epipelagic and mesopelagic water column.

Plastic waste has been documented in nearly all types of marine environments and has been found in species spanning all levels of marine food webs. Within these marine environments, deep pelagic waters encompass the largest ecosystems on Earth. We lack a comprehensive understanding of the concentrations, cycling, and fate of plastic waste in sub-surface waters, constraining our ability to implement effective, large-scale policy and conservation strategies. We used remotely operated vehicles and engineered purpose-built samplers to collect and examine the distribution of microplastics in the Monterey Bay pelagic ecosystem at water column depths ranging from 5 to 1000 m. Laser Raman spectroscopy was used to identify microplastic particles collected from throughout the deep pelagic water column, with the highest concentrations present at depths between 200 and 600 m. Examination of two abundant particle feeders in this ecosystem, pelagic red crabs (Pleuroncodes planipes) and giant larvaceans (Bathochordaeus stygius), showed that microplastic particles readily flow from the environment into coupled water column and seafloor food webs. Our findings suggest that one of the largest and currently underappreciated reservoirs of marine microplastics may be contained within the water column and animal communities of the deep sea

The vertical distribution of iron stable isotopes in the North Atlantic near Bermuda

Seawater dissolved iron isotope ratios (δ^(56)Fe) have been measured in the North Atlantic near Bermuda. In a full-depth profile, seawater dissolved δ^(56)Fe is isotopically heavy compared to crustal values throughout the water column (δ^(56)Fe_(IRMM-014) = +0.30‰ to +0.71‰). Iron isotope ratios are relatively homogenous in the upper water column (between +0.30‰ to +0.45‰ above 1500 m), and δ^(56)Fe increases below this to a maximum of +0.71‰ at 2500 m, decreasing again to +0.35‰ at 4200 m. The δ^(56)Fe profile is very different from the iron concentration profile; in the upper water column [Fe] is variable while δ^(56)Fe is relatively constant, and in the deeper water column δ^(56)Fe varies while [Fe] remains relatively constant. The δ^(56)Fe profile is also not well correlated with other hydrographic tracers in the North Atlantic such as temperature, salinity, or the concentrations of oxygen, phosphate, silica, and CFC-11. The dissimilarity between δ^(56)Fe profiles and profiles of [Fe] and other hydrographic tracers shows that Fe isotope ratios provide a unique sort of information about ocean chemistry, and they suggest that Fe isotopes may therefore be a valuable new tool for tracing the global sources, sinks, and biogeochemical cycling of Fe

Planktonic and sediment-associated aerobic methanotrophs in two seep systems along the North American margin

Methane vents are of significant geochemical and ecological importance. Notable progress has been made towards understanding anaerobic methane oxidation in marine sediments, however, the diversity and distribution of aerobic methanotrophs in the water column are poorly characterized. Both environments play an essential role in regulating methane release from the oceans to the atmosphere. In this study, the diversity of particulate methane monooxygenase (pmoA) and 16S rRNA genes from two methane vent environments along the California continental margin was characterized. The pmoA phylotypes recovered from methane-rich sediments and the overlying water column differed. Sediments harbored the greatest number of unique pmoA phylotypes broadly affiliated with the Methylococcaceae family, whereas planktonic pmoA phylotypes formed three clades that were distinct from the sediment-hosted methanotrophs, and distantly related to established methanotrophic clades. Water-column associated phylotypes were highly similar between field sites, suggesting that planktonic methanotroph diversity is controlled primarily by environmental factors rather than geographical proximity. Analysis of 16S rRNA genes from methane-rich waters did not readily recover known methanotrophic lineages, with only a few phylotypes demonstrating distant relatedness to Methylococcus. The development of new pmo primers increased the recovery of monooxygenase genes from the water column and led to the discovery of a highly diverged monooxygenase sequence which is phylogenetically intermediate to Amo and pMMO. This sequence potentiates insight into the amo/pmo superfamily. Together, these findings lend perspective into the diversity and segregation of aerobic methanotrophs within different methane-rich habitats in the marine environment

European Multidisciplinary and Water-Column Observatory - European Research Infrastructure Consortium (EMSO ERIC): challenges and opportunities for strategic European marine sciences

EMSO (European Multidisciplinary Seafloor and water-column Observatory, www.emso-eu.org) is a large‐scale European Research Infrastructure I. It is a distributed infrastructure of strategically placed, deep‐sea seafloor and water column observatory nodes with the essential scientific objective of real‐time, longterm observation of environmental processes related to the interaction between the geosphere, biosphere, and hydrosphere. The geographic locations of the EMSO observatory nodes represent key sites in European waters, from the Arctic, through the Atlantic and Mediterranean, to the Black Sea (Figure 1), as defined through previous studies performed in FP6 and FP7 EC projects such as ESONET‐CA, ESONET‐NoE, EMSO-PP (Person et al., 2015)Peer Reviewe

Contribution of epilithic diatoms to benthic−pelagic coupling in a temperate river

Water residence time in the middle course of rivers is often too short to allow substantial phytoplankton development, and primary production is essentially provided by benthic phototrophic biofilms. However, cells occurring in the water column might derive from biofilm microalgae, and, reciprocally, sedimenting microalgae could represent a continuous source of colonizers for benthic biofilms. A comparative study of biofilm and pelagic microphytic communities (with special focus on diatoms) was carried out over 15 mo in the Garonne River, France. Diatoms dominated both biofilm and pelagic microphytic communities. Typically benthic diatoms were found in high abundance in the water column, and their biomass in the water was correlated with their biomass in the biofilm, indicating the benthic origin of these cells. Variations in river discharge and temperature drove the temporal distribution of benthic and pelagic communities: under high flow mixing (winter) communities showed the greatest similarity, and during low flow (summer)they differed the most. Even during low flow, typical benthic species were observed in the water column, indicating that benthic−pelagic exchanges were not exclusively due to high water flow. Moreover, during low flow periods, planktonic diatoms typically settled within biofilms, presumably because of higher water residence times, and/or upstream reservoir flushing

Biocompatible polymer-assisted dispersion of multi walled carbon nanotubes in water, application to the investigation of their ecotoxicity using Xenopus laevis amphibian larvae

Carbon nanotubes (CNTs) tend to readily agglomerate and settle down in water, while the adsorption of compounds present in natural aquatic media could enhance their dispersion and stabilization in the water column. We designed a new exposure protocol to compare the biological responses of Xenopus laevis larvae exposed in semi-static conditions to size-reduced agglomerates of multi-walled carbon nanotubes (MWCNTs) in suspension in the water column and/or to larger agglomerates. Suspensions were prepared using a combination of a non-covalent functionalization with a non-toxic polymer (either carboxymethylcellulose, CMC, or gum arabic, GA) and mechanical dispersion methods (mainly ultrasonication). The ingestion of agglomerates which have settled down was incriminated in the disruption of the intestinal transit and the assimilation of nutrients, leading to acute and chronic toxicities at the highest tested concentrations. Rise in mortality, decrease in the growth rate and induction of genotoxicity from low concentrations (1 mg/L in the presence of CMC) were evidenced in presence of suspended MWCNTs in the water column. The biological responses seemed to be modulated when GA, a potential antioxidant, was used. We hypothesized that MWCNTs should interfere mainly at the surface of the gills, acting as a potential respiratory toxicant and generally inducing indirect effects

European Multidisciplinary and Water-Column Observatory - European Research Infrastructure Consortium (EMSO ERIC): Challenges and opportunities for Strategic European Marine Sciences

EMSO (European Multidisciplinary Seafloor and water-column Observatory, www.emso-eu.org) is a large-scale European Research Infrastructure I. It is a distributed infrastructure of strategically placed, deep-sea seafloor and water column observatory nodes with the essential scientific objective of real-time, long-term observation of environmental processes related to the interaction between the geosphere, biosphere, and hydrosphere. The geographic locations of the EMSO observatory nodes represent key sites in European waters, from the Arctic, through the Atlantic and Mediterranean, to the Black Sea (Figure 1), as defined through previous studies performed in FP6 and FP7 EC projects such as ESONET-CA, ESONET-NoE, EMSO-PP (Person et al., 2015).Peer ReviewedPostprint (published version

From the surface to the seafloor: How giant larvaceans transport microplastics into the deep sea.

Plastic waste is a pervasive feature of marine environments, yet little is empirically known about the biological and physical processes that transport plastics through marine ecosystems. To address this need, we conducted in situ feeding studies of microplastic particles (10 to 600 μm in diameter) with the giant larvacean Bathochordaeus stygius. Larvaceans are abundant components of global zooplankton assemblages, regularly build mucus "houses" to filter particulate matter from the surrounding water, and later abandon these structures when clogged. By conducting in situ feeding experiments with remotely operated vehicles, we show that giant larvaceans are able to filter a range of microplastic particles from the water column, ingest, and then package microplastics into their fecal pellets. Microplastics also readily affix to their houses, which have been shown to sink quickly to the seafloor and deliver pulses of carbon to benthic ecosystems. Thus, giant larvaceans can contribute to the vertical flux of microplastics through the rapid sinking of fecal pellets and discarded houses. Larvaceans, and potentially other abundant pelagic filter feeders, may thus comprise a novel biological transport mechanism delivering microplastics from surface waters, through the water column, and to the seafloor. Our findings necessitate the development of tools and sampling methodologies to quantify concentrations and identify environmental microplastics throughout the water column