Variability of contour line alignment on sequential images with the Heidelberg Retina Tomograph

•Background: The influence of the contour line alignment software algorithm on the variability of the Heidelberg Retina Tomograph (HRT) parameters remains unclear. •Methods: Nine discrete topographic images were acquired with the HRT from the right eye in six healthy, emmetropic subjects. The variability of topometric data obtained from the same topographic image, analyzed within different samples of images, was evaluated. A total of four mean topographic images was computed for each subject from: all nine discrete images (A), the first six of those images (B), the last six of those nine images (C), and the first three combined with the last three images (D). A contour line was computed on the mean topographic image generated from the nine discrete topographic images (A). This contour line was then applied to the three other mean topographic images (B, C, and D), using the contour line alignment in the HRT software. Subsequently, the contour line on the mean topographic images was applied to each of the discrete members of the particular images subsets used to compute the mean topographic image, and the topometric data for these discrete topographic images was computed successively for each subset. Prior to processing each subset, the contour line on the discrete topographic images was deleted. This strategy provided a total of three analyses on each discrete topographic image: as a member of the nine images (mean topographic image A), and as a member of two subsets of images (mean topographic image B, C, and/or D). The coefficient of variation (100×SD/mean) of the topographic parameters within those three analyses was calculated for each discrete topographic image in each subject ("intraimage” coefficient of variation). In addition, a coefficient of variation between the nine discrete topographic images ("interimage” coefficient of variation) was calculated. •Results: The "intraimage” and "interimage” variability for the various topographic parameters ranged between 0.03% and 3.10% and between 0.03% and 24.07% respectively. The "intraimage” coefficients of variation and "interimage” coefficients of variation correlated significant (r 2=0.77;P<0.0001). •Conclusion: A high "intraimage” variability, i.e. a high variability in contour line alignment between sequential images, might be an important source of test re-test variability between sequential image

Natural Selection For Environmentally Induced Phenotypes In Tadpoles

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/137452/1/evo05119.pd

Market Valuations in the New Economy: An Investigation of What Has Changed

We find mixed support for the hypothesis that a “New Economy” subperiod occurred in the late 1990s in which the relation between equity value and traditional financial variables differs from previous periods. We examine a regression model of equity value on financial variables over 25 years for a broad firm sample and for firm subsamples thought to be emblematic of the New Economy. We find the regression model\u27s explanatory power declined in the New Economy subperiod for all firm subsamples. However, for all subsamples, the regression model\u27s structure during the New Economy subperiod is not unusual compared to other subperiods

Commentary: Research Recommendations for Understanding the Decline of American Kestrels (\u3cem\u3eFalco sparverius\u3c/em\u3e) Across Much of North America

Across much of North America, populations of American Kestrels (Falco sparverius) have been in decline for decades (Farmer et al. 2008, Farmer and Smith 2009, Smallwood et al. 2009a, Paprocki et al. 2014, Sauer et al. 2014). Hypothesized causes of kestrel declines include predation by Cooper\u27s Hawks (Accipiter cooperii; Farmer et al. 2008), pathogens (e.g., Nemeth et al. 2006), habitat loss (Sullivan and Wood 2005, Farmer et al. 2008, Bolgiano et al. 2015), pesticides (Smallwood et al. 2009a, Rattner et al. 2015), and climate change (Steenhof and Peterson 2009b), yet no hypothesized factor has been supported empirically (Farmer et al. 2006, Smallwood et al. 2009a). Despite the effort spent evaluating threats, the lack of a “smoking-gun” to explain the decline of this charismatic species has led many professional and citizen scientists to call for action on several unlikely, and unsupported, threats. Here, we evaluate and build on hypothesized causes of declines considered by other authors (e.g., Sullivan and Wood 2005, Farmer et al. 2008, Smallwood et al. 2009a) to synthesize conclusions and articulate research needs

Characterising dark net marketplace purchasers in a sample of regular psychostimulant users

Background: The past five years has seen a proliferation in marketplaces operating on the 'dark net' selling licit and illicit substances. While monitoring systems have investigated the specific substances for sale on these marketplaces, less is known about consumer motivations for accessing these marketplaces and factors associated with their use. Methods: An Australian national sample (n = 800) recruited on the basis of regular psychostimulant use was recruited and asked about purchasing substances from dark net marketplaces and the reasons for doing so. Respondents who had purchased any drug from a dark net marketplace in the preceding year were compared to those who had not in terms of demographic information and factors including drug use, criminal activity, and sexual and mental health. Results: Nine percent (n = 68) of the sample had purchased from dark net markets in the past year. MDMA, LSD and cannabis were the three most commonly purchased substances, and the main benefits cited for purchasing online were the better quality and lower cost of drugs available. Controlling for other factors, participants who purchased from dark net marketplaces in the past year tended to be younger, more likely to be involved in recent property crime and to have used more classes of drugs in the preceding six months, specifically psychedelics and 'new psychoactive drugs'. Conclusions: Though a small minority of participants reported having purchased drugs online in the preceding six months, these appeared to be a more

Optimizing the vertebrate vestibular semicircular canal: could we balance any better?

The fluid-filled semicircular canals (SCCs) of the vestibular system are used by all vertebrates to sense angular rotation. Despite masses spanning seven decades, all mammalian SCCs are nearly the same size. We propose that the SCC represents a sensory organ that evolution has `optimally designed'. Four geometric parameters are used to characterize the SCC, and `building materials' of given physical properties are assumed. Identifying physical and physiological constraints on SCC operation, we find that the most sensitive SCC has dimensions consistent with available data.Comment: 4 pages, 3 figure

Costs of Inducible Defence along a Resource Gradient

In addition to having constitutive defence traits, many organisms also respond to predation by phenotypic plasticity. In order for plasticity to be adaptive, induced defences should incur a benefit to the organism in, for example, decreased risk of predation. However, the production of defence traits may include costs in fitness components such as growth, time to reproduction, or fecundity. To test the hypothesis that the expression of phenotypic plasticity incurs costs, we performed a common garden experiment with a freshwater snail, Radix balthica, a species known to change morphology in the presence of molluscivorous fish. We measured a number of predator-induced morphological and behavioural defence traits in snails that we reared in the presence or absence of chemical cues from fish. Further, we quantified the costs of plasticity in fitness characters related to fecundity and growth. Since plastic responses may be inhibited under limited resource conditions, we reared snails in different densities and thereby levels of competition. Snails exposed to predator cues grew rounder and thicker shells, traits confirmed to be adaptive in environments with fish. Defence traits were consistently expressed independent of density, suggesting strong selection from predatory molluscivorous fish. However, the expression of defence traits resulted in reduced growth rate and fecundity, particularly with limited resources. Our results suggest full defence in predator related traits regardless of resource availability, and costs of defence consequently paid in traits related to fitness

The braid groups of the projective plane and the Fadell-Neuwirth short exact sequence

International audienceWe study the pure braid groups $P_n(RP^2)$ of the real projective plane $RP^2$, and in particular the possible splitting of the Fadell-Neuwirth short exact sequence $1 \to P_m(RP^2 \ {x_1,...,x_n} \to P_{n+m}(RP^2) \stackrel{p_{\ast}}{\to} P_n(RP^2) \to 1$, where $n\geq 2$ and $m\geq 1$, and $p_{\ast}$ is the homomorphism which corresponds geometrically to forgetting the last $m$ strings. This problem is equivalent to that of the existence of a section for the associated fibration $p: F_{n+m}(RP^2) \to F_n(RP^2)$ of configuration spaces. Van Buskirk proved in 1966 that $p$ and $p_{\ast}$ admit a section if $n=2$ and $m=1$. Our main result in this paper is to prove that there is no section if $n\geq 3$. As a corollary, it follows that $n=2$ and $m=1$ are the only values for which a section exists. As part of the proof, we derive a presentation of $P_n(RP^2)$: this appears to be the first time that such a presentation has been given in the literature

A novel class of microRNA-recognition elements that function only within open reading frames.

MicroRNAs (miRNAs) are well known to target 3' untranslated regions (3' UTRs) in mRNAs, thereby silencing gene expression at the post-transcriptional level. Multiple reports have also indicated the ability of miRNAs to target protein-coding sequences (CDS); however, miRNAs have been generally believed to function through similar mechanisms regardless of the locations of their sites of action. Here, we report a class of miRNA-recognition elements (MREs) that function exclusively in CDS regions. Through functional and mechanistic characterization of these 'unusual' MREs, we demonstrate that CDS-targeted miRNAs require extensive base-pairing at the 3' side rather than the 5' seed; cause gene silencing in an Argonaute-dependent but GW182-independent manner; and repress translation by inducing transient ribosome stalling instead of mRNA destabilization. These findings reveal distinct mechanisms and functional consequences of miRNAs that target CDS versus the 3' UTR and suggest that CDS-targeted miRNAs may use a translational quality-control-related mechanism to regulate translation in mammalian cells