Central domain deletions affect the SAXS solution structure and function of Yeast Hsp40 proteins Sis1 and Ydj1

Background: Ydj1 and Sis1 are structurally and functionally distinct Hsp40 proteins of the yeast cytosol. Sis1 is an essential gene whereas the ydj1 gene is essential for growth at elevated temperatures and cannot complement sis1 gene deletion. Truncated polypeptides capable of complementing the sis1 gene deletion comprise the J-domain of either Sis1 or Ydj1 connected to the G/F region of Sis1 (but not Ydj1). Sis1 mutants in which the G/F was deleted but G/M maintained were capable of complementing the sis1 gene deletion. Results: To investigate the relevance of central domains on the structure and function of Ydj1 and Sis1 we prepared Sis1 constructs deleting specific domains. The mutants had decreased affinity for heated luciferase but were equally capable of stimulating ATPase activity of Hsp70. Detailed low resolution structures were obtained and the overall flexibility of Hsp40 and its mutants were assessed using SAXS methods. Deletion of either the G/M or the G/M plus CTDI domains had little impact on the quaternary structure of Sis1 analyzed by the SAXS technique. However, deletion of the ZFLR-CTDI changed the relative position of the J-domains in Ydj1 in such a way that they ended up resembling that of Sis1. The results revealed that the G/F and G/M regions are not the only flexible domains. All model structures exhibit a common clamp-like conformation. Conclusions: Our results suggest that the central domains, previously appointed as important features for substrate binding, are also relevant keeping the J-domains in their specific relative positions. The clamp-like architecture observed seems also to be favorable to the interactions of Hsp40 with Hsp70

Simultaneous and time resolved X-ray scattering and differential Scanning calorimetry experiments (SAXS/WAXD/DSC) using synchrotron radiation

New instrumentation designed to perform simultaneous time-resolved X-ray scattering experiments at small and wide angles (SAXS/WAXD) as well as differential scanning calorimetry (DSC) has recently been installed at the SAXS beamline of the Laboratório Nacional de Luz Síncrotron. The DSC device proved to be comparable with conventional equipment, allowing temperature variation with rates of up to 60 °C/min with precision of 0.1 °C. The use of a synchrotron radiation source and position sensitive X-ray detectors allows data collection in real time with 30 s resolution. The application of this experimental set-up in the isothermal crystallization and fusion of polymeric materials is given as an example. We present results of experiments with polycaprolactone (PCL) and its blends with chlorinated polyethylene (PCL/PECl), in which the simultaneous appearance of a crystalline structure and lamellar formation can be observed and the rate of process change for different compositions and thermal treatments can be determined. As a concluding remark, we mention that the SAXS/WAXD/DSC simultaneous experiments can also be performed with great advantage in the study of colloids and gel formation, as well as phase transitions in a variety of samples.Neste trabalho apresentamos uma nova instrumentação instalada na linha de SAXS do LNLS. Este equipamento permite a realização de experimentos simultâneos e resolvidos no tempo de espalhamento de raios X a baixos e altos ângulos (SAXS/WAXD) e calorimetria diferencial de varredura (DSC). O dispositivo de DSC mostrou-se comparável a equipamentos convencionais, com taxas de variação de temperatura de até 60 °C/min e uma precisão de 0.1 °C. O uso de uma fonte de radiação síncrotron e de detetores de raios X sensíveis à posição permitiu a obtenção de dados com uma resolução temporal de 30 s. A aplicação deste arranjo experimental no estudo da cristalização isotérmica e da fusão em materiais poliméricos é mostrada para o caso da policaprolactona (PCL) e suas blendas com polietileno clorado (PCL/PECl). As experiências mostraram a formação simultânea da estrutura cristalina e da morfologia lamelar nos diferentes estágios da cristalização assim como mudanças na cinética do processo com o tratamento isotérmico e a composição da blenda. Finalmente cabe destacar que experimentos simultâneos de SAXS/WAXD/DSC permitem o estudo de distintos processos abrangendo não apenas os de cristalização, mas também a formação de colóides e géis ou as transições de fase estruturais em diversos materiais.199206Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq

Conserved Central Domains Control the Quaternary Structure of Type I and Type II Hsp40 Molecular Chaperones

Hsp40s play an essential role in protein metabolism by regulating the polypeptide binding and release cycle of Hsp70. The Hsp40 family is large and specialized family members direct Hsp70 to perform highly specific tasks. Type I and Type II Hsp40s, such as yeast Ydj1 and Sis1, are homodimers that dictate functions of cytosolic Hsp70, but how they do so is unclear. Type I Hsp40s contain a conserved centrally located Cysteine-rich domain that is replaced by a Glycine and Methionine rich region in Type II Hsp40s, but the mechanism by which these unique domains influence Hsp40 structure and function is unknown. This is the case because high-resolution structures of full-length forms of these Hsp40s have not been solved. To fill this void we built low-resolution models of the quaternary structure of Ydj1 and Sis1 with information obtained from biophysical measurements of protein shape, small angle X-ray scattering and ab initio protein modeling. Low resolution models were also calculated for the chimeric Hsp40s YSY and SYS, in which the central domains of Ydj1 and Sis1 were exchanged. Similar to their human homologs, Ydj1 and Sis1 each has a unique shape with major structural differences apparently being the orientation of the J-domains relative to the long axis of the dimers. Central domain swapping in YSY and SYS correlates with the switched ability of YSY and SYS to perform unique functions of Sis1 and Ydj1, respectively. Models for the mechanism by which the conserved Cysteine-rich domain and Glycine and Methionine rich region confer structural and functional specificity to Type I and Type II Hsp40s are discussed

Investigation by combined solid-state NMR and SAXS methods of the morphology and domain size in polystyrene-b-polyethylene oxide-b-polystyrene triblock copolymers

The microphase structure of a series of polystyrene-b-polyethylene oxide-b-polystyrene (SEOS) triblock copolymers with different compositions and molecular weights has been studied by solid-state NMR, DSC, wide and small angle X-ray scattering (WAXS and SAXS). WAXS and DSC measurements were used to detect the presence of crystalline domains of polyethylene-oxide (PEO) blocks at room temperature as a function of the copolymer chemical composition. Furthermore, DSC experiments allowed the determination of the melting temperatures of the crystalline part of the PEO blocks. SAXS measurements, performed above and below the melting temperature of the PEO blocks, revealed the formation of periodic structures, but the absence or the weakness of high order reflections peaks did not allow a clear assessment of the morphological structure of the copolymers. This information was inferred by combining the results obtained by SAXS and 1H NMR spin diffusion experiments, which also provided an estimation of the size of the dispersed phases of the nanostructured copolymers. © 2009 Wiley Periodicals, Inc. J Polym Sci Part B: Polym Phys 48: 55–64, 2010FAPES

Nanomateriales compuestos de polímeros biodegradables

Películas de materiales compuestos basados en el polímero diodegradable policaprolactona y 5% en peso de organoarcillas fueron preparadas por mezcla de fundentes. Las organoarcillas se obtuvieron por modificación de bentonita patagónica mediante intercambio catiónico con distintas proporciones de bromuro de hexadeciltrimetilamonio (HD) y octadeciltrimetilamonio (OD). Las respuestas SAXS y WAXS de todas las películas muestran expansión de las organoarcillas indicando ingreso del polímero en las galerías. Las medidas dieléctricas mostraron un incremento en la constante dieléctrica y en la pérdida dieléctrica a baja frecuencia.Facultad de Ingenierí

Nanomateriales compuestos de polímeros biodegradables

Películas de materiales compuestos basados en el polímero diodegradable policaprolactona y 5% en peso de organoarcillas fueron preparadas por mezcla de fundentes. Las organoarcillas se obtuvieron por modificación de bentonita patagónica mediante intercambio catiónico con distintas proporciones de bromuro de hexadeciltrimetilamonio (HD) y octadeciltrimetilamonio (OD). Las respuestas SAXS y WAXS de todas las películas muestran expansión de las organoarcillas indicando ingreso del polímero en las galerías. Las medidas dieléctricas mostraron un incremento en la constante dieléctrica y en la pérdida dieléctrica a baja frecuencia.Facultad de Ingenierí

Nanomateriales compuestos de polímeros biodegradables

Películas de materiales compuestos basados en el polímero diodegradable policaprolactona y 5% en peso de organoarcillas fueron preparadas por mezcla de fundentes. Las organoarcillas se obtuvieron por modificación de bentonita patagónica mediante intercambio catiónico con distintas proporciones de bromuro de hexadeciltrimetilamonio (HD) y octadeciltrimetilamonio (OD). Las respuestas SAXS y WAXS de todas las películas muestran expansión de las organoarcillas indicando ingreso del polímero en las galerías. Las medidas dieléctricas mostraron un incremento en la constante dieléctrica y en la pérdida dieléctrica a baja frecuencia.Facultad de Ingenierí

Experiências simultâneas de espalhamento de raios X e calorimetria diferencial de varredura (SAXS/WAXD/DSC) com resolução temporal utilizando radiação síncrotron Simultaneous and time resolved X-ray scattering and differential Scanning calorimetry experiments (SAXS/WAXD/DSC) using synchrotron radiation

Neste trabalho apresentamos uma nova instrumentação instalada na linha de SAXS do LNLS. Este equipamento permite a realização de experimentos simultâneos e resolvidos no tempo de espalhamento de raios X a baixos e altos ângulos (SAXS/WAXD) e calorimetria diferencial de varredura (DSC). O dispositivo de DSC mostrou-se comparável a equipamentos convencionais, com taxas de variação de temperatura de até 60 °C/min e uma precisão de 0.1 °C. O uso de uma fonte de radiação síncrotron e de detetores de raios X sensíveis à posição permitiu a obtenção de dados com uma resolução temporal de 30 s. A aplicação deste arranjo experimental no estudo da cristalização isotérmica e da fusão em materiais poliméricos é mostrada para o caso da policaprolactona (PCL) e suas blendas com polietileno clorado (PCL/PECl). As experiências mostraram a formação simultânea da estrutura cristalina e da morfologia lamelar nos diferentes estágios da cristalização assim como mudanças na cinética do processo com o tratamento isotérmico e a composição da blenda. Finalmente cabe destacar que experimentos simultâneos de SAXS/WAXD/DSC permitem o estudo de distintos processos abrangendo não apenas os de cristalização, mas também a formação de colóides e géis ou as transições de fase estruturais em diversos materiais.New instrumentation designed to perform simultaneous time-resolved X-ray scattering experiments at small and wide angles (SAXS/WAXD) as well as differential scanning calorimetry (DSC) has recently been installed at the SAXS beamline of the Laboratório Nacional de Luz Síncrotron. The DSC device proved to be comparable with conventional equipment, allowing temperature variation with rates of up to 60 °C/min with precision of 0.1 °C. The use of a synchrotron radiation source and position sensitive X-ray detectors allows data collection in real time with 30 s resolution. The application of this experimental set-up in the isothermal crystallization and fusion of polymeric materials is given as an example. We present results of experiments with polycaprolactone (PCL) and its blends with chlorinated polyethylene (PCL/PECl), in which the simultaneous appearance of a crystalline structure and lamellar formation can be observed and the rate of process change for different compositions and thermal treatments can be determined. As a concluding remark, we mention that the SAXS/WAXD/DSC simultaneous experiments can also be performed with great advantage in the study of colloids and gel formation, as well as phase transitions in a variety of samples

Probing the structure of nanograined CuO powders

The microstructural properties of polycrystalline CuO powders and their evolution during controlled high energetic ball milling (HEBM) were studied using conventional X-ray diffraction (XRD) techniques and in situ temperature-dependent small and wide angle scattering (SAXS–WAXS) synchrotron radiation experiments. Volume weighted average grain size, unit cell expansion, oxygen deficiency, and microstrain values as a function of milling time were obtained from XRD. SAXS data revealed different nanostructures for samples synthesized by one-step solid-state reaction (SSR) or HEBM-treated powders. The latter presented the characteristics of a multilayered nanoscale solid system with surface fractal behavior. Correlation of the XRD microstructural parameters and the power law exponent of the SAXS curves as a function of temperature and milling time provided a coherent picture of the structure of HEBM-treated powders. The overall structural information presented in this article may shed some light on the macroscopic physical properties of CuO nanostructures.Facultad de Ciencias Exacta

Effect of synthesis conditions on the microstructure of TEOS derived silica hydrogels synthesized by the alcohol-free sol-gel route

Silica matrices synthesized from a pre-hydrolysis step in ethanol followed by alcohol removal at low pressure distillation, and condensation in water, are suitable for encapsulation of biomolecules and microorganisms and building bioactive materials with optimized optical properties. Here we analyze the microstructure of these hydrogels from the dependence of I(q) data acquired from SAXS experiments over a wide range of silica concentration and pH employed in the condensation step. From the resulting data it is shown that there is a clear correlation between the microscopic parameters-cluster fractal dimension (D), elementary particle radius (a) and cluster gyration radius (R)-with the attenuation of visible light when the condensation step proceeds at pH < 6. At higher pHs, there is a steep dependence of the cluster density (~R D-3 ) with the condensation pH, and non-monotonous changes of attenuance are less than 20%, revealing the complexity of the system. These results, which were obtained for a wide pH and silica concentration range, reinforce the idea that the behavior of gels determined in a restricted interval of synthesis variables cannot be extrapolated, and comparison of gelation times is not enough for predicting their properties. © 2011 Springer Science+Business Media, LLC.Fil: Perullini, Ana Mercedes. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; ArgentinaFil: Jobbagy, Matias. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; ArgentinaFil: Aldabe, Sara Alfonsina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; ArgentinaFil: Torriani, Iris L.. Universidade Estadual de Campinas; BrasilFil: Candal, Roberto Jorge. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química, Física de los Materiales, Medioambiente y Energía. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química, Física de los Materiales, Medioambiente y Energía; Argentina. Universidad Nacional de San Martín. Escuela de Ciencia y Tecnología; Argentin