Humanity\u27s Best Friend: A Dog-Centric Approach to Addressing Global Challenges

No other animal has a closer mutualistic relationship with humans than the dog (Canis familiaris). Domesticated from the Eurasian grey wolf (Canis lupus), dogs have evolved alongside humans over millennia in a relationship that has transformed dogs and the environments in which humans and dogs have co-inhabited. The story of the dog is the story of recent humanity, in all its biological and cultural complexity. By exploring human-dog-environment interactions throughout time and space, it is possible not only to understand vital elements of global history, but also to critically assess our present-day relationship with the natural world, and to begin to mitigate future global challenges. In this paper, co-authored by researchers from across the natural and social sciences, arts and humanities, we argue that a dog-centric approach provides a new model for future academic enquiry and engagement with both the public and the global environmental agenda

Fair game: exploring the dynamics, perception and environmental impact of ‘surplus’ wild foods in England 10kya-present

This paper brings together zooarchaeological data from Neolithic to Post-medieval sites in England to explore the plasticity of cultural attitudes to the consumption of wild animals. It shows how, through time, game has been considered variously as ‘tabooed’ and ‘edible’, each having implications for patterns of biodiversity and wildlife management. The essential points being made are that deeper-time studies can reveal how human perceptions of ‘surplus foods’ have the potential to both create and remedy problems of environmental sustainability and food security. Perhaps more significantly, this paper argues that understanding the bio-cultural past of edible wild animal species has the potential to transform human attitudes to game in the present. This is important at a time when food security and the production of surplus are pressing national and global concerns

Zootherapy in archaeology: the case of the fallow deer (Dama dama dama)

The abundant anthropological and historical evidence for animal-based medicine, or zootherapy, suggests that animals are, and have always been, perceived as important components in maintaining human health and well-being. Despite being interwoven into every aspect of life, from food medicines to ritual practice and everyday human-animal interactions, zootherapies are widely considered invisible in the archaeological record, perhaps because of their organic nature, the method of remedy preparation, or potentially because of their sheer ubiquity. An alternative explanation is that archaeologists are just not viewing the evidence through an appropriate theoretical lens. This article sets out to examine whether archaeologists might make a greater contribution to our understanding of ancient zootherapy. As a case study, it draws particularly on evidence pertaining to the European fallow deer (Dama dama dama) an exotic species that is well represented in classical mythology and iconography and appears to have been attributed with magico-religious medicinal qualities. Indeed, here we argue that their perceived magico-medicinal value may even have been the prime mover in their human-instigated spread across Europe

Fallow deer (Dama dama dama) management in Roman South-East Britain

This paper presents new carbon, nitrogen and sulphur isotope data for European fallow deer (Dama dama dama) in Roman Britain and discusses results in light of evidence from classical texts, landscape archaeology, zooarchaeology and the limited available samples of metric data. The new isotope data presented here are from Fishbourne Roman Palace (Sussex), two sites on the Isle of Thanet (Kent) and a further two sites in London. In spite of small sample sizes the data make an important contribution to the very limited corpus of scientific research on the species and provide new resolution to the nature of fallow deer movement and management in Roman Britain

Fair game: exploring the dynamics, perception and environmental impact of ‘surplus’ wild foods in England 10kya-present

This paper brings together zooarchaeological data from Neolithic to Post-medieval sites in England to explore the plasticity of cultural attitudes to the consumption of wild animals. It shows how, through time, game has been considered variously as ‘tabooed’ and ‘edible’, each having implications for patterns of biodiversity and wildlife management. The essential points being made are that deeper-time studies can reveal how human perceptions of ‘surplus foods’ have the potential to both create and remedy problems of environmental sustainability and food security. Perhaps more significantly, this paper argues that understanding the bio-cultural past of edible wild animal species has the potential to transform human attitudes to game in the present. This is important at a time when food security and the production of surplus are pressing national and global concerns

Dama dentition: a new tooth eruption and wear method for assessing the age of fallow deer (Dama dama)

Reliable ageing techniques for wild animals are notoriously challenging to develop because of the scarcity of sizeable collections of known‐age specimens. Without such techniques it is difficult to reconstruct hunting patterns, which is a significant problem for the examination of assemblages from pre‐farming cultures. This paper presents a new method, based on mandibular tooth eruption and wear, for assessing the age of fallow deer. The method was developed from a large collection (n = 156) of known‐age Dama dama specimens, has been blind tested by members of the zooarchaeological community and represents a user‐friendly system with the potential to generate large compatible datasets through which the dynamics of human–Dama relationships can be examined

Inferring Allele Frequency Trajectories from Ancient DNA Indicates That Selection on a Chicken Gene Coincided with Changes in Medieval Husbandry Practices

Ancient DNA provides an opportunity to infer the drivers of natural selection by linking allele frequency changes to temporal shifts in environment or cultural practices. However, analyses have often been hampered by uneven sampling and uncertainties in sample dating, as well as being confounded by demographic processes. Here, we present a Bayesian statistical framework for quantifying the timing and strength of selection using ancient DNA that explicitly addresses these challenges. We applied this method to time series data for two loci: TSHR and BCDO2, both hypothesised to have undergone strong and recent selection in domestic chickens. The derived variant in TSHR, associated with reduced aggression to conspecifics and faster onset of egg laying, shows strong selection beginning around 1,100 years ago, coincident with archaeological evidence for intensified chicken production and documented changes in egg and chicken consumption. To our knowledge, this is the first example of preindustrial domesticate trait selection in response to a historically attested cultural shift in food preference. For BCDO2, we find support for selection, but demonstrate that the recent rise in allele frequency could also have been driven by gene flow from imported Asian chickens during more recent breed formations. Our findings highlight that traits found ubiquitously in modern domestic species may not necessarily have originated during the early stages of domestication. In addition, our results demonstrate the importance of precise estimation of allele frequency trajectories through time for understanding the drivers of selection.The authors are grateful to Brian Follett for his comments on the biological functions of the TSHR gene. L.L., R.A., K.D., and G.L. were supported by Natural Environment Research Council, UK (grant numbers NE/K005243/1, NE/K003259/1). M.G.T. was supported by Wellcome Trust Senior Investigator Award (grant number 100719/Z/12/Z) and Leverhulme Trust (grant number RP2011-R-045). A.M. and A.E. were supported by the European Research Council Consolidator grant (grant number 647787-LocalAdaptation). R.A., N.S., and G.L. were supported by Arts and Humanities Research Council (grant number AH/L006979/1). R.A. and G.L. were supported by European Research Council (grant number ERC-2013-StG 337574-UNDEAD)

Distribution and Compartmentalization of Human Circulating and Tissue-Resident Memory T Cell Subsets

SummaryKnowledge of human T cells derives chiefly from studies of peripheral blood, whereas their distribution and function in tissues remains largely unknown. Here, we present a unique analysis of human T cells in lymphoid and mucosal tissues obtained from individual organ donors, revealing tissue-intrinsic compartmentalization of naive, effector, and memory subsets conserved between diverse individuals. Effector memory CD4+ T cells producing IL-2 predominated in mucosal tissues and accumulated as central memory subsets in lymphoid tissue, whereas CD8+ T cells were maintained as naive subsets in lymphoid tissues and IFN-γ-producing effector memory CD8+ T cells in mucosal sites. The T cell activation marker CD69 was constitutively expressed by memory T cells in all tissues, distinguishing them from circulating subsets, with mucosal memory T cells exhibiting additional distinct phenotypic and functional properties. Our results provide an assessment of human T cell compartmentalization as a new baseline for understanding human adaptive immunity

The relationship between the phosphate and structural carbonate fractionation of fallow deer bioapatite in tooth enamel

The species‐specific relationship between phosphate (δ18OP values) and structural carbonate (δ18OC values) oxygen isotope ratios has been established for several modern and fossil animal species but until now it has not been investigated in European fallow deer (Dama dama dama). This study describes the relationship between phosphate and structural carbonate bioapatite in tooth enamel of extant fallow deer, which will help us further understand the species' unique environmental and cultural history. Methods The oxygen isotope composition of phosphate (δ18OP value) and structural carbonate (δ18OC value) of hydroxylapatite was determined in 51 modern fallow deer tooth enamel samples from across Europe and West Asia. The δ18OC values were measured on a GV IsoPrime dual‐inlet mass spectrometer and the δ18OP values on a temperature‐controlled elemental analyser (TC/EA) coupled to a DeltaPlus XL isotope ratio mass spectrometer via a ConFlo III interface. Results This study establishes a direct and linear relationship between the δ18OC and δ18OP values from fallow deer tooth enamel (δ18OC = +9.244(±0.216) + 0.958 * δ18OP (±0.013)). Despite the successful regression, the variation in δ18O values from samples collected in the same geographical area is greater than expected, although the results cluster in broad climatic groupings when Koppen‐Geiger classifications are taken into account for the individuals' locations. Conclusions This is the first comprehensive study of the relationship between ionic forms of oxygen (phosphate oxygen and structural carbonate) in fallow deer dental enamel. The new equation will allow direct comparison with other herbivore data. Variable δ18O values within populations of fallow deer broadly reflect the ecological zones they are found in which may explain this pattern of results in other euryphagic species