Kinetics of Ordering in Fluctuation-Driven First-Order Transitions: Simulations and Dynamical Renormalization

Many systems where interactions compete with each other or with constraints are well described by a model first introduced by Brazovskii. Such systems include block copolymers, alloys with modulated phases, Rayleigh-Benard Cells and type-I superconductors. The hallmark of this model is that the fluctuation spectrum is isotropic and has a minimum at a nonzero wave vector represented by the surface of a d-dimensional hyper-sphere. It was shown by Brazovskii that the fluctuations change the free energy structure from a $\phi ^{4}$ to a $\phi ^{6}$ form with the disordered state metastable for all quench depths. The transition from the disordered to the periodic, lamellar structure changes from second order to first order and suggests that the dynamics is governed by nucleation. Using numerical simulations we have confirmed that the equilibrium free energy function is indeed of a $\phi ^{6}$ form. A study of the dynamics, however, shows that, following a deep quench, the dynamics is described by unstable growth rather than nucleation. A dynamical calculation, based on a generalization of the Brazovskii calculations shows that the disordered state can remain unstable for a long time following the quench.Comment: 18 pages, 15 figures submitted to PR

Dynamics of systems with isotropic competing interactions in an external field: a Langevin approach

We study the Langevin dynamics of a ferromagnetic Ginzburg-Landau Hamiltonian with a competing long-range repulsive term in the presence of an external magnetic field. The model is analytically solved within the self consistent Hartree approximation for two different initial conditions: disordered or zero field cooled (ZFC), and fully magnetized or field cooled (FC). To test the predictions of the approximation we develop a suitable numerical scheme to ensure the isotropic nature of the interactions. Both the analytical approach and the numerical simulations of two-dimensional finite systems confirm a simple aging scenario at zero temperature and zero field. At zero temperature a critical field $h_c$ is found below which the initial conditions are relevant for the long time dynamics of the system. For $h < h_c$ a logarithmic growth of modulated domains is found in the numerical simulations but this behavior is not captured by the analytical approach which predicts a $t^1/2$ growth law at $T = 0$

Coulomb Gauge QCD, Confinement, and the Constituent Representation

Quark confinement and the genesis of the constituent quark model are examined in nonperturbative QCD in Coulomb gauge. We employ a self-consistent method to construct a quasiparticle basis and to determine the quasiparticle interaction. The results agree remarkably well with lattice computations. They also illustrate the mechanism by which confinement and constituent quarks emerge, provide support for the Gribov-Zwanziger confinement scenario, clarify several perplexing issues in the constituent quark model, and permit the construction of an improved model of low energy QCD.Comment: 43 pages, 14 figures, revtex, uses psfig.st

Ordering of the lamellar phase under a shear flow

The dynamics of a system quenched into a state with lamellar order and subject to an uniform shear flow is solved in the large-N limit. The description is based on the Brazovskii free-energy and the evolution follows a convection-diffusion equation. Lamellae order preferentially with the normal along the vorticity direction. Typical lengths grow as $\gamma t^{5/4}$ (with logarithmic corrections) in the flow direction and logarithmically in the shear direction. Dynamical scaling holds in the two-dimensional case while it is violated in D=3

Ocean forests: breakthrough yields for macroalgae

The US Department of Energy Advanced Research Projects Agency - Energy (ARPA-E) MacroAlgae Research Inspiring Novel Energy Research (MARINER) program is encouraging technologies for the sustainable harvest of large funding research of macroalgae for biofuels at less than $80 per dry metric ton (DMT). The Ocean Forests team, led by the University of Southern Mississippi, is developing a complete managed ecosystem where nutrients are transformed and recycled. The team’s designs address major bottlenecks in profitability of offshore aquaculture systems including economical moored structures that can withstand storms, efficient planting, managing and harvesting systems, and sustainable nutrient supply. The work is inspired by Lapointe who reported yields of Gracilaria tikvahiae equivalent to 127 DMT per hectare per year (compared with standard aquaculture systems in the range of 20 to 40 DMT/ha/yr). This approach offers the potential for breakthrough yields for many macroalgae species. Moreover, mini-ecosystems in offshore waters create communities of macroalgae, shellfish, and penned finfish, supplemented by visiting free-range fish that can increase productivity, produce quality products, and create jobs and income for aquafarmers. Additional benefits include reduced disease in fish pens, cleaning contaminated coastal waters, and maximizing nutrient recycling. Cost projections for a successful, intensive, scaled system are competitive with current prices for fossil fuels

First-principles thermodynamics of transition metals and alloys: W, NiAl, PdTi

We apply the pseudopotential density functional perturbation theory approach along with the quasiharmonic approximation to calculate the thermal expansion of tungsten and two important metallic alloys, NiAl and PdTi. We derive the theory for anisotropic crystal structures and test the approximation that the anisotropic effects of thermal expansion are equivalent to negative pressure - this simplifies the calculation enormously for complex structures. Throughout, we find excellent agreement with experimental results.Comment: 11 pages 9 fig

A connectome and analysis of the adult Drosophila central brain

The neural circuits responsible for animal behavior remain largely unknown. We summarize new methods and present the circuitry of a large fraction of the brain of the fruit fly Drosophila melanogaster. Improved methods include new procedures to prepare, image, align, segment, find synapses in, and proofread such large data sets. We define cell types, refine computational compartments, and provide an exhaustive atlas of cell examples and types, many of them novel. We provide detailed circuits consisting of neurons and their chemical synapses for most of the central brain. We make the data public and simplify access, reducing the effort needed to answer circuit questions, and provide procedures linking the neurons defined by our analysis with genetic reagents. Biologically, we examine distributions of connection strengths, neural motifs on different scales, electrical consequences of compartmentalization, and evidence that maximizing packing density is an important criterion in the evolution of the fly’s brain

Parental origin of sequence variants associated with complex diseases

To access publisher full text version of this article. Please click on the hyperlink in Additional Links fieldEffects of susceptibility variants may depend on from which parent they are inherited. Although many associations between sequence variants and human traits have been discovered through genome-wide associations, the impact of parental origin has largely been ignored. Here we show that for 38,167 Icelanders genotyped using single nucleotide polymorphism (SNP) chips, the parental origin of most alleles can be determined. For this we used a combination of genealogy and long-range phasing. We then focused on SNPs that associate with diseases and are within 500 kilobases of known imprinted genes. Seven independent SNP associations were examined. Five-one with breast cancer, one with basal-cell carcinoma and three with type 2 diabetes-have parental-origin-specific associations. These variants are located in two genomic regions, 11p15 and 7q32, each harbouring a cluster of imprinted genes. Furthermore, we observed a novel association between the SNP rs2334499 at 11p15 and type 2 diabetes. Here the allele that confers risk when paternally inherited is protective when maternally transmitted. We identified a differentially methylated CTCF-binding site at 11p15 and demonstrated correlation of rs2334499 with decreased methylation of that site.info:eu-repo/grantAgreement/EC/FP7/21807

Meta-analysis of type 2 Diabetes in African Americans Consortium

Type 2 diabetes (T2D) is more prevalent in African Americans than in Europeans. However, little is known about the genetic risk in African Americans despite the recent identification of more than 70 T2D loci primarily by genome-wide association studies (GWAS) in individuals of European ancestry. In order to investigate the genetic architecture of T2D in African Americans, the MEta-analysis of type 2 DIabetes in African Americans (MEDIA) Consortium examined 17 GWAS on T2D comprising 8,284 cases and 15,543 controls in African Americans in stage 1 analysis. Single nucleotide polymorphisms (SNPs) association analysis was conducted in each study under the additive model after adjustment for age, sex, study site, and principal components. Meta-analysis of approximately 2.6 million genotyped and imputed SNPs in all studies was conducted using an inverse variance-weighted fixed effect model. Replications were performed to follow up 21 loci in up to 6,061 cases and 5,483 controls in African Americans, and 8,130 cases and 38,987 controls of European ancestry. We identified three known loci (TCF7L2, HMGA2 and KCNQ1) and two novel loci (HLA-B and INS-IGF2) at genome-wide significance (4.15 × 10(-94)<P<5 × 10(-8), odds ratio (OR)  = 1.09 to 1.36). Fine-mapping revealed that 88 of 158 previously identified T2D or glucose homeostasis loci demonstrated nominal to highly significant association (2.2 × 10(-23) < locus-wide P<0.05). These novel and previously identified loci yielded a sibling relative risk of 1.19, explaining 17.5% of the phenotypic variance of T2D on the liability scale in African Americans. Overall, this study identified two novel susceptibility loci for T2D in African Americans. A substantial number of previously reported loci are transferable to African Americans after accounting for linkage disequilibrium, enabling fine mapping of causal variants in trans-ethnic meta-analysis studies.Peer reviewe