Hox cluster duplication in the basal teleost Hiodon alosoides (Osteoglossomorpha)

Large-scale—even genome-wide—duplications have repeatedly been invoked as an explanation for major radiations. Teleosts, the most species-rich vertebrate clade, underwent a “fish-specific genome duplication” (FSGD) that is shared by most ray-finned fish lineages. We investigate here the Hox complement of the goldeye (Hiodon alosoides), a representative of Osteoglossomorpha, the most basal teleostean clade. An extensive PCR survey reveals that goldeye has at least eight Hox clusters, indicating a duplicated genome compared to basal actinopterygians. The possession of duplicated Hox clusters is uncoupled to species richness. The Hox system of the goldeye is substantially different from that of other teleost lineages, having retained several duplicates of Hox genes for which crown teleosts have lost at least one copy. A detailed analysis of the PCR fragments as well as full length sequences of two HoxA13 paralogs, and HoxA10 and HoxC4 genes places the duplication event close in time to the divergence of Osteoglossomorpha and crown teleosts. The data are consistent with—but do not conclusively prove—that Osteoglossomorpha shares the FSGD

EC91-269 Domestic Poultry Feed Formulation Guide

This publication provides basic, practical information about nturition and diet requirements for poultry. Nutrient requirements, diet formulations, feed ingredient analyses, and feeding methods are ever changing. Feed cost is the largest single item of expense in producing poultry meat or eggs. Poultry producers should adopt a comprehensive feeding program based on sound nutrition principles tailored to a specific production purpose. This publication provides the basis for such a feeding program

Cornus × elwinortonii and Cornus × rutgersensis (Cornaceae), new names for two artificially produced hybrids of big-bracted dogwoods

Big-bracted dogwoods (Cornus sp.) are well-known plants in North America and eastern Asia where they occur as wild, generally spring-flowering understory trees. They are also popular ornamental landscape plants, and many economically important cultivars are propagated and sold across North America, Europe, and Asia. Starting in the late 1960s, Elwin Orton of Rutgers University in New Jersey (USA) utilized three geographically disjunct species of dogwoods, C. florida (eastern North America), C. nuttallii (western North America), and C. kousa (East Asia), in an extensive interspecific hybridization program. He was successful in developing the first-ever interspecific F1 hybrids of these species, several of which have become staple items in the ornamental nursery trade due to their enhanced ornamental qualities and resistance to diseases. The original F1 plants are still alive at Rutgers University. While they have been available for decades in horticultural commerce, the interspecific hybrid crosses were never formally described and their scientific hybrid names were never published. For the C. kousa × C. florida hybrids, the name Cornus ‘rutgersensis’ has been used on occasion in the horticultural trade, but without proper citation and description. Here, it is formally named Cornus × rutgersensis Mattera, T. Molnar, & Struwe, hybr. nov. For the C. kousa × C. nuttallii hybrids, no previous name has been used, and it is hereby named Cornus × elwinortonii Mattera, T. Molnar, & Struwe, hybr. nov. The need for providing scientific names for commonly used horticultural hybrids is discussed. Holotype material for both hybrid names was collected from the original F1 hybrids for full documentation, typification, and description. The comparative intermediate development of leaves, inflorescence structures, and fruit types of the hybrids and their parents is discussed and illustrated. Etymology, phenology, and cultivation aspects of these hybrids and their cultivars including backcrosses to C. kousa are also presented

Cornus × elwinortonii and Cornus × rutgersensis (Cornaceae), new names for two artificially produced hybrids of big-bracted dogwoods

Big-bracted dogwoods (Cornus sp.) are well-known plants in North America and eastern Asia where they occur as wild, generally spring-flowering understory trees. They are also popular ornamental landscape plants, and many economically important cultivars are propagated and sold across North America, Europe, and Asia. Starting in the late 1960s, Elwin Orton of Rutgers University in New Jersey (USA) utilized three geographically disjunct species of dogwoods, C. florida (eastern North America), C. nuttallii (western North America), and C. kousa (East Asia), in an extensive interspecific hybridization program. He was successful in developing the first-ever interspecific F1 hybrids of these species, several of which have become staple items in the ornamental nursery trade due to their enhanced ornamental qualities and resistance to diseases. The original F1 plants are still alive at Rutgers University. While they have been available for decades in horticultural commerce, the interspecific hybrid crosses were never formally described and their scientific hybrid names were never published. For the C. kousa × C. florida hybrids, the name Cornus ‘rutgersensis’ has been used on occasion in the horticultural trade, but without proper citation and description. Here, it is formally named Cornus × rutgersensis Mattera, T. Molnar, & Struwe, hybr. nov. For the C. kousa × C. nuttallii hybrids, no previous name has been used, and it is hereby named Cornus × elwinortonii Mattera, T. Molnar, & Struwe, hybr. nov. The need for providing scientific names for commonly used horticultural hybrids is discussed. Holotype material for both hybrid names was collected from the original F1 hybrids for full documentation, typification, and description. The comparative intermediate development of leaves, inflorescence structures, and fruit types of the hybrids and their parents is discussed and illustrated. Etymology, phenology, and cultivation aspects of these hybrids and their cultivars including backcrosses to C. kousa are also presented

The return of the white-tailed eagle (Haliaeetus albicilla) to northern Germany: Modelling the past to predict the future

Krüger O, Gruenkorn T, Struwe-Juhl B. The return of the white-tailed eagle (Haliaeetus albicilla) to northern Germany: Modelling the past to predict the future. BIOLOGICAL CONSERVATION. 2010;143(3):710-721.Linking age-specific vital rates to population growth through demographic matrix models can enhance our understanding of crucial population processes, vital in a conservation context. The white-tailed eagle (Haliaeetus albicilla) population in the Federal State of Schleswig-Holstein, Germany, has been monitored since re-colonisation in 1947 and provides a well-documented example of a recovery. We test how demographic models capture growth trajectories of a recovering population and how applicable they are in guiding population management of endangered species. From 1947 to 1974, the population was stable but the growth rate predicted by an age-structured matrix model was -6.1% per annum. The small but stable population must have been maintained by immigration. From 1975 to 2008, observed and predicted population growths were very similar (6.7% and 4% per annum respectively). Elasticity and life-stage simulation analyses identified adult and pre-breeding survival as key vital rate elements. While the prospective analyses identified survival as the key vital rate influencing population growth, the increasing reproduction rate allowed the recovery to take place; thus caution is needed when prospective modelling makes management recommendations. Nevertheless, conservation efforts should address key mortality factors such as lead poisoning and collision with wind turbines. A logistic model predicted a maximum carrying capacity of 255 pairs for the Federal State, but using the highest currently observed density (1.4 pairs per 100 km(2)) and differences in habitat suitability, a more likely carrying capacity was estimated at 122 pairs. Under both scenarios, current population growth should slow soon. (C) 2010 Elsevier Ltd. All rights reserved

Convergent immunological solutions to Argentine hemorrhagic fever virus neutralization

Transmission of hemorrhagic fever New World arenaviruses from their rodent reservoirs to human populations poses substantial public health and economic dangers. These zoonotic events are enabled by the specific interaction between the New World arenaviral attachment glycoprotein, GP1, and cell surface human transferrin receptor (hTfR1). Here, we present the structural basis for how a mouse-derived neutralizing antibody (nAb), OD01, disrupts this interaction by targeting the receptor-binding surface of the GP1 glycoprotein from Junín virus (JUNV), a hemorrhagic fever arenavirus endemic in central Argentina. Comparison of our structure with that of a previously reported nAb complex (JUNV GP1-GD01) reveals largely overlapping epitopes but highly distinct antibody-binding modes. Despite differences in GP1 recognition, we find that both antibodies present a key tyrosine residue, albeit on different chains, that inserts into a central pocket on JUNV GP1 and effectively mimics the contacts made by the host TfR1. These data provide a molecular-level description of how antibodies derived from different germline origins arrive at equivalent immunological solutions to virus neutralization

Epidemiology and Molecular Characterization of Clostridium difficile Strains from Patients with Diarrhea: Low Disease Incidence and Evidence of Limited Cross-Infection in a Swedish Teaching Hospital

We prospectively studied the epidemiology of Clostridium difficile-associated diarrhea (CDAD) in a 900-bed hospital over the course of 12 months by PCR-ribotyping of C. difficile isolates. A total of 304 cases were diagnosed, corresponding to an overall incidence of 7/1,000 admissions, with higher rates in nephrology, hematology, and organ transplantation wards (37, 30, and 21/1,000), and 72% were classified as hospital associated (onset in hospital or onset at home but after a hospital stay within 2 months). All 382 isolates from 227 of 304 (75%) patients available for PCR-ribotyping were typeable, yielding 70 PCR-ribotypes. The three most common types comprised 30% of hospital-associated and 34% of community-associated cases, indicating import via admitted patients as a major source of C. difficile strains occurring in the hospital. Of the 227 patients studied, 38% each contributed 2 to 13 fecal samples positive for C. difficile over the course of the study period. Repeat isolates of the same PCR-ribotype as the first isolate were found in 79% of these patients and in 95% of specimens delivered within 30 days, compared to 63% of those obtained at 31 to 204 days. Nosocomial acquisition of CDAD, defined as the proportion of cases sharing C. difficile type and admitted to the same ward within 2 or 12 months, was 20% and 32% of hospital-associated cases and 14% and 23% of all cases, respectively. Thus, most CDAD cases diagnosed over the course of the study period, including those associated with hospitalization, appeared to be caused by endogenous C. difficile strains rather than by strains truly being acquired in the hospital

4-H Skills For Life Animal Science Series. Scratching the Surface: Project Activity Guide

This guide is one of over 40 separate pieces developed by teams of Extension Service educators, volunteers, youth, professional writers and artists from the 12 states of the North Central Region. This series is the first in a set of four books dealing with poultry. The set has three youth guides that were developed for three levels of expertise - beginner, intermediate, and advanced. The fourth guide in this set is a group activity guide. This archival publication may not reflect current scientific knowledge or recommendations. Current information is available from the University of Minnesota Extension: https://www.extension.umn.edu

Fucose‐Migration in intakten protonierten Glykan‐Ionen – ein universelles Phänomen in der Massenspektrometrie

Fucose ist ein essenzieller Desoxyzucker, der in einer Vielzahl biologisch relevanter Glykane und ihrer Konjugate vorkommt. Ein verbreitetes Problem in massenspektrometrischen Analysen von fucosylierten Glykanen ist der intramolekulare Transfer von Fucoseeinheiten, der zu fehlerhaften Sequenzzuordnungen führen kann. Diese Migrationsreaktion wird typischerweise der Aktivierung während der kollisionsinduzierten Dissoziation in der Tandem‐Massenspektrometrie (Tandem‐MS) zugeordnet. Hier wird erstmals mit Kaltionen‐Spektroskopie gezeigt, dass Fucose‐Migration nicht auf Fragmente beschränkt ist, die in der Tandem‐MS erhalten werden, sondern auch in intakten Glykan‐Ionen beobachtet werden kann. Diese Beobachtung lässt auf eine mögliche niedrige Energiebarriere für diese Transferreaktion schließen und verallgemeinert die Fucose‐Migration zu einem Problem, das bei jeder Art von Massenspektrometrie‐Experiment auftreten kann

Fucose Migration in Intact Protonated Glycan Ions: A Universal Phenomenon in Mass Spectrometry

Fucose is an essential deoxysugar that is found in a wide range of biologically relevant glycans and glycoconjugates. A recurring problem in mass spectrometric analyses of fucosylated glycans is the intramolecular migration of fucose units, which can lead to erroneous sequence assignments. This migration reaction is typically assigned to activation during collision‐induced dissociation (CID) in tandem mass spectrometry (MS). In this work, we utilized cold‐ion spectroscopy and show for the first time that fucose migration is not limited to fragments obtained in tandem MS and can also be observed in intact glycan ions. This observation suggests a possible low‐energy barrier for this transfer reaction and generalizes fucose migration to an issue that may universally occur in any type of mass spectrometry experiment