7,952 research outputs found
Substrate Range and Genetic Analysis of Acinetobacter Vanillate Demethylase
An Acinetobacter sp. genetic screen was used to probe structure-function relationships in vanillate demethylase, a two-component monooxygenase. Mutants with null, leaky, and heat-sensitive phenotypes were isolated. Missense mutations tended to be clustered in specific regions, most of which make known contributions to catalytic activity. The vanillate analogs m-anisate, m-toluate, and 4-hydroxy-3,5-dimethylbenzoate are substrates of the enzyme and weakly inhibit the metabolism of vanillate by wild-type Acinetobacter bacteria. PCR mutagenesis of vanAB, followed by selection for strains unable to metabolize vanillate, yielded mutant organisms in which vanillate metabolism is more strongly inhibited by the vanillate analogs. Thus, the procedure opens for investigation amino acid residues that may contribute to the binding of either vanillate or its chemical analogs to wild-type and mutant vanillate demethylases. Selection of phenotypic revertants following PCR mutagenesis gave an indication of the extent to which amino acid substitutions can be tolerated at specified positions. In some cases, only true reversion to the original amino acid was observed. In other examples, a range of amino acid substitutions was tolerated. In one instance, phenotypic reversion failed to produce a protein with the original wild-type sequence. In this example, constraints favoring certain nucleotide substitutions appear to be imposed at the DNA level
UV Surface Environment of Earth-like Planets Orbiting FGKM Stars Through Geological Evolution
The UV environment of a host star affects the photochemistry in the
atmosphere, and ultimately the surface UV environment for terrestrial planets
and therefore the conditions for the origin and evolution of life. We model the
surface UV radiation environment for Earth-sized planets orbiting FGKM stars at
the 1AU equivalent distance for Earth through its geological evolution. We
explore four different types of atmospheres corresponding to an early Earth
atmosphere at 3.9 Gyr ago and three atmospheres covering the rise of oxygen to
present day levels at 2.0 Gyr ago, 0.8 Gyr ago and modern Earth (Following
Kaltenegger et al. 2007). In addition to calculating the UV flux on the surface
of the planet, we model the biologically effective irradiance, using DNA damage
as a proxy for biological damage. We find that a pre-biotic Earth (3.9 Gyr ago)
orbiting an F0V star receives 6 times the biologically effective radiation as
around the early Sun and 3520 times the modern Earth-Sun levels. A pre-biotic
Earth orbiting GJ 581 (M3.5V) receives 300 times less biologically effective
radiation, about 2 times modern Earth-Sun levels. The UV fluxes calculated here
provide a grid of model UV environments during the evolution of an Earth-like
planet orbiting a range of stars. These models can be used as inputs into
photo-biological experiments and for pre-biotic chemistry and early life
evolution experiments.Comment: 10 pages, 5 figure
Effect of UV Radiation on the Spectral Fingerprints of Earth-like Planets Orbiting M dwarfs
We model the atmospheres and spectra of Earth-like planets orbiting the
entire grid of M dwarfs for active and inactive stellar models with =
2300K to = 3800K and for six observed MUSCLES M dwarfs with UV
radiation data. We set the Earth-like planets at the 1AU equivalent distance
and show spectra from the VIS to IR (0.4m - 20m) to compare
detectability of features in different wavelength ranges with JWST and other
future ground- and spaced-based missions to characterize exo-Earths. We focus
on the effect of UV activity levels on detectable atmospheric features that
indicate habitability on Earth, namely: HO, O, CH, NO and
CHCl.
To observe signatures of life - O/O in combination with reducing
species like CH, we find that early and active M dwarfs are the best
targets of the M star grid for future telescopes. The O spectral feature at
0.76m is increasingly difficult to detect in reflected light of later M
dwarfs due to low stellar flux in that wavelength region. NO, another
biosignature detectable in the IR, builds up to observable concentrations in
our planetary models around M dwarfs with low UV flux. CHCl could become
detectable, depending on the depth of the overlapping NO feature.
We present a spectral database of Earth-like planets around cool stars for
directly imaged planets as a framework for interpreting future lightcurves,
direct imaging, and secondary eclipse measurements of the atmospheres of
terrestrial planets in the HZ to design and assess future telescope
capabilities.Comment: in press, ApJ (submitted August 18, 2014), 16 pages, 12 figure
Investigation of acceptor levels and hole scattering mechanisms in p-gallium selenide by means of transport measurements under pressure
The effect of pressure on acceptor levels and hole scattering mechanisms in
p-GaSe is investigated through Hall effect and resistivity measurements under
quasi-hydrostatic conditions up to 4 GPa. The pressure dependence of the hole
concentration is interpreted through a carrier statistics equation with a
single (nitrogen) or double (tin) acceptor whose ionization energies decrease
under pressure due to the dielectric constant increase. The pressure effect on
the hole mobility is also accounted for by considering the pressure
dependencies of both the phonon frequencies and the hole-phonon coupling
constants involved in the scattering rates.Comment: 13 pages, Latex, 4 ps figures. to appear in High Pressure Research 69
(1997
The connection between entropy and the absorption spectra of Schwarzschild black holes for light and massless scalar fields
We present heuristic arguments suggesting that if EM waves with wavelengths
somewhat larger than the Schwarzschild radius of a black hole were fully
absorbed by it, the second law of thermodynamics would be violated, under the
Bekenstein interpretation of the area of a black hole as a measure of its
entropy. Thus, entropy considerations make the well known fact that large
wavelengths are only marginally absorbed by black holes, a natural consequence
of thermodynamics. We also study numerically the ingoing radial propagation of
a scalar field wave in a Schwarzschild metric, relaxing the standard assumption
which leads to the eikonal equation, that the wave has zero spatial extent. We
find that if these waves have wavelengths larger that the Schwarzschild radius,
they are very substantially reflected, fully to numerical accuracy.
Interestingly, this critical wavelength approximately coincides with the one
derived from entropy considerations of the EM field, and is consistent with
well known limit results of scattering in the Schwarzschild metric. The
propagation speed is also calculated and seen to differ from the value , for
wavelengths larger than , in the vicinity of . As in all
classical wave phenomena, whenever the wavelength is larger or comparable to
the physical size of elements in the system, in this case changes in the
metric, the zero extent 'particle' description fails, and the wave nature
becomes apparent.Comment: 14 Pages, 4 figures. Accepted for publication in the Journal Entrop
Organic ambipolar semiconductors for TFT applications
In the last years we have devoted some effort to the search of new high-mobility semiconductors with ambipolar performances, good processability and environmental stability. Our approach, which is one of the most widely used, consists in the combination of donor and acceptor moieties in the conjugated skeleton, which allows fine tuning of the frontier molecular orbitals. For OTFT applications, low-lying HOMOs are essential to resist air oxidation and thus increase device stability. However, if the HOMO energy is too low, the resulting barrier to hole injection may compromise the transistor performance. Thus, a delicate balance between these two effects is needed.
In particular, we have combined naphthaleneimide-derived moieties as electron accepting groups with electron-rich oligothiophene fragments. In these materials, we have found that the presence of ambipolar transport in these planar molecules can be understood on the basis of three interrelated properties: (i) the absence of skeletal distortions allows closer intermolecular pi-pi stacking and enhanced intramolecular pi-conjugation, (ii) increased pi-conjugation raises the HOMO energy, which approaches the Fermi level of common used electrodes; and (iii) more planar structures translate into lower Marcus reorganization energies. However, one of the limitations of these types of semiconductors is the presence of a molecular dipole moment, which forces the molecules to pack with pairwise intermolecular interactions orienting the naphthaleneimide cores in opposite directions, decreasing in some cases molecular orbitals overlapping. In recent contributions, we have devoted our efforts to analyze the effect of molecular interactions, through chemical modifications in order to induce parallel and antiparallel molecular packing, on the electronic properties of ambipolar semiconductors.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech
Neurotrophins Role in Depression Neurobiology: A Review of Basic and Clinical Evidence
Depression is a neuropsychiatric disorder affecting a huge percentage of the active population especially in developed countries. Research has devoted much of its attention to this problematic and many drugs have been developed and are currently prescribed to treat this pathology. Yet, many patients are refractory to the available therapeutic drugs, which mainly act by increasing the levels of the monoamines serotonin and noradrenaline in the synaptic cleft. Even in the cases antidepressants are effective, it is usually observed a delay of a few weeks between the onset of treatment and remission of the clinical symptoms. Additionally, many of these patients who show remission with antidepressant therapy present a relapse of depression upon treatment cessation. Thus research has focused on other possible molecular targets, besides monoamines, underlying depression. Both basic and clinical evidence indicates that depression is associated with several structural and neurochemical changes where the levels of neurotrophins, particularly of brain-derived neurotrophic factor (BDNF), are altered. Antidepressants, as well as other therapeutic strategies, seem to restore these levels. Neuronal atrophy, mostly detected in limbic structures that regulate mood and cognition, like the hippocampus, is observed in depressed patients and in animal behavioural paradigms for depression. Moreover, chronic antidepressant treatment enhances adult hippocampal neurogenesis, supporting the notion that this event underlies antidepressants effects. Here we
review some of the preclinical and clinical studies, aimed at disclosing the role of neurotrophins in the pathophysiological mechanisms of depression and the mode of action of antidepressants, which favour the neurotrophic/neurogenic hypothesis
Understanding organic materials performance in field-effect transistors
Comunicación oralIn the last years, much of our effort has been devoted to the search and study of new high-mobility semiconductors for organic thin film transistors. The approach used for the materials design has been two-fold: (i) the combination of donor and acceptor moieties in the pi-conjugated skeleton, which allows fine tuning of the frontier molecular orbitals, being this necessary for achieving electron/hole or ambipolar transport and ambient stability; and (ii) rational selection of the type and positioning of specific solubilizing substituents ensuring processability, which is essential to make these materials scalable to industry.
However, material processability should be attained minimizing a negative effect on charge transport. Therefore, proper energy levels, planar molecular conformations, close intermolecular pi-pi stacking and adequate thin film crystallinity need to be maintained upon alkyl substitution.
In this communication, several examples of molecular and polymeric materials are shown. A rational design, guided by experimental and theoretical evidences, has prompted modifications on their conjugated skeletons,
donor/acceptor subunits ratio and/or selection of proper alkyl solubilizing chains, which induce noticeable changes in their electronic performances. The main aim of these studies is the basic understanding of charge transport in
organic materials. For this end, we will use Raman spectroscopy and DFT quantum-chemical calculations as important tools for materials characterization.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech
Echo Emission From Dust Scattering and X-Ray Afterglows of Gamma-Ray Bursts
We investigate the effect of X-ray echo emission in gamma-ray bursts (GRBs).
We find that the echo emission can provide an alternative way of understanding
X-ray shallow decays and jet breaks. In particular, a shallow decay followed by
a "normal" decay and a further rapid decay of X-ray afterglows can be together
explained as being due to the echo from prompt X-ray emission scattered by dust
grains in a massive wind bubble around a GRB progenitor. We also introduce an
extra temporal break in the X-ray echo emission. By fitting the afterglow light
curves, we can measure the locations of the massive wind bubbles, which will
bring us closer to finding the mass loss rate, wind velocity, and the age of
the progenitors prior to the GRB explosions.Comment: 25 pages, 3 figures, 2 tables. Accepted for publication in Ap
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