Ablative response of a silica phenolic to simulated liquid propellant rocket engine operating conditions

Ablative response of silica phenolic to simulated liquid propellant rocket engine operating condition

Thermochemical ablation of rocket nozzle insert materials Final report

Resistance of rocket nozzle throat insert materials to corrosion and meltin

Analytical and experimental study of ablation material for rocket engine application Final report

Techniques for rating performance of ablative materials in liquid-propellant rocket engine

Structure and evolution of a proviral locus of Glyptapanteles indiensis bracovirus

Background. Bracoviruses (BVs), a group of double-stranded DNA viruses with segmented genomes, are mutualistic endosymbionts of parasitoid wasps. Virus particles are replication deficient and are produced only by female wasps from proviral sequences integrated into the wasp genome. Virus particles are injected along with eggs into caterpillar hosts, where viral gene expression facilitates parasitoid survival and therefore perpetuation of proviral DNA. Here we describe a 223 kbp region of Glyptapanteles indiensis genomic DNA which contains a part of the G. indiensis bracovirus (GiBV) proviral genome. Results. Eighteen of ∼24 GiBV viral segment sequences are encoded by 7 non-overlapping sets of BAC clones, revealing that some proviral segment sequences are separated by long stretches of intervening DNA. Two overlapping BACs, which contain a locus of 8 tandemly arrayed proviral segments flanked on either side by ∼35 kbp of non-packaged DNA, were sequenced and annotated. Structural and compositional analyses of this cluster revealed it exhibits a G+C and nucleotide composition distinct from the flanking DNA. By analyzing sequence polymorphisms in the 8 GiBV viral segment sequences, we found evidence for widespread selection acting on both protein-coding and non-coding DNA. Comparative analysis of viral and proviral segment sequences revealed a sequence motif involved in the excision of proviral genome segments which is highly conserved in two other bracoviruses. Conclusion. Contrary to current concepts of bracovirus proviral genome organization our results demonstrate that some but not all GiBV proviral segment sequences exist in a tandem array. Unexpectedly, non-coding DNA in the 8 proviral genome segments which typically occupies ∼70% of BV viral genomes is under selection pressure suggesting it serves some function(s). We hypothesize that selection acting on GiBV proviral sequences maintains the genetic island-like nature of the cluster of proviral genome segments described herein. In contrast to large differences in the predicted gene composition of BV genomes, sequences that appear to mediate processes of viral segment formation, such as proviral segment excision and circularization, appear to be highly conserved, supporting the hypothesis of a single origin for BVs. © 2007 Desjardins et al; licensee BioMed Central Ltd

Gene content evolution in the arthropods

Arthropods comprise the largest and most diverse phylum on Earth and play vital roles in nearly every ecosystem. Their diversity stems in part from variations on a conserved body plan, resulting from and recorded in adaptive changes in the genome. Dissection of the genomic record of sequence change enables broad questions regarding genome evolution to be addressed, even across hyper-diverse taxa within arthropods. Using 76 whole genome sequences representing 21 orders spanning more than 500 million years of arthropod evolution, we document changes in gene and protein domain content and provide temporal and phylogenetic context for interpreting these innovations. We identify many novel gene families that arose early in the evolution of arthropods and during the diversification of insects into modern orders. We reveal unexpected variation in patterns of DNA methylation across arthropods and examples of gene family and protein domain evolution coincident with the appearance of notable phenotypic and physiological adaptations such as flight, metamorphosis, sociality, and chemoperception. These analyses demonstrate how large-scale comparative genomics can provide broad new insights into the genotype to phenotype map and generate testable hypotheses about the evolution of animal diversity

The Occurrence of Photorhabdus-Like Toxin Complexes in Bacillus thuringiensis

Recently, genomic sequencing of a Bacillus thuringiensis (Bt) isolate from our collection revealed the presence of an apparent operon encoding an insecticidal toxin complex (Tca) similar to that first described from the entomopathogen Photorhabdus luminescens. To determine whether these genes are widespread among Bt strains, we screened isolates from the collection for the presence of tccC, one of the genes needed for the expression of fully functional toxin complexes. Among 81 isolates chosen to represent commonly encountered biochemical phenotypes, 17 were found to possess a tccC. Phylogenetic analysis of the 81 isolates by multilocus sequence typing revealed that all the isolates possessing a tccC gene were restricted to two sequence types related to Bt varieties morrisoni, tenebrionis, israelensis and toumanoffi. Sequencing of the ∼17 kb tca operon from two isolates representing each of the two sequence types revealed >99% sequence identity. Optical mapping of DNA from Bt isolates representing each of the sequence types revealed nearly identical plasmids of ca. 333 and 338 kbp, respectively. Selected isolates were found to be toxic to gypsy moth larvae, but were not as effective as a commercial strain of Bt kurstaki. Some isolates were found to inhibit growth of Colorado potato beetle. Custom Taqman® relative quantitative real-time PCR assays for Tc-encoding Bt revealed both tcaA and tcaB genes were expressed within infected gypsy moth larvae

Scalable Private Set Union from Symmetric-Key Techniques

We present a new efficient protocol for computing private set union (PSU). Here two semi-honest parties, each holding a dataset of known size (or of a known upper bound), wish to compute the union of their sets without revealing anything else to either party. Our protocol is in the OT hybrid model. Beyond OT extension, it is fully based on symmetric-key primitives. We motivate the PSU primitive by its direct application to network security and other areas. At the technical core of our PSU construction is the reverse private membership test RPMT protocol. In RPMT, the sender with input $x^*$ interacts with a receiver holding a set $X$. As a result, the receiver learns (only) the bit indicating whether $x^*$ is in $X$, while the sender learns nothing about the set $X$. (Previous similar protocols provide output to the opposite party, hence the term reverse\u27\u27 private membership.) We believe our RPMT abstraction and constructions may be a building block in other applications as well. We demonstrate the practicality of our proposed protocol with an implementation. For input sets of size $2^{20}$ and using a single thread, our protocol requires 238 seconds to securely compute the set union, regardless of the bit length of the items. Our protocol is amenable to parallelization. Increasing the number of threads from 1 to 32, our protocol requires only 13.1 seconds, a factor of $18.25 \times$ improvement. To the best of our knowledge, ours is the first protocol that reports on large-size experiments, makes code available, and avoids extensive use of computationally expensive public-key operations. (No PSU code is publicly available for prior work, and the only prior symmetric-key-based work reports on small experiments and focuses on the simpler 3-party, 1-corruption setting.)Our work improves reported PSU state of the art by factor up to $7,600\times$ for large instances

PSI from PaXoS: Fast, Malicious Private Set Intersection

We present a 2-party private set intersection (PSI) protocol which provides security against malicious participants, yet is almost as fast as the fastest known semi-honest PSI protocol of Kolesnikov et al. (CCS 2016). Our protocol is based on a new approach for two-party PSI, which can be instantiated to provide security against either malicious or semi-honest adversaries. The protocol is unique in that the only difference between the semi-honest and malicious versions is an instantiation with different parameters for a linear error-correction code. It is also the first PSI protocol which is concretely efficient while having linear communication and security against malicious adversaries, while running in the OT-hybrid model (assuming a non-programmable random oracle). State of the art semi-honest PSI protocols take advantage of cuckoo hashing, but it has proven a challenge to use cuckoo hashing for malicious security. Our protocol is the first to use cuckoo hashing for malicious-secure PSI. We do so via a new data structure, called a probe-and-XOR of strings (PaXoS), which may be of independent interest. This abstraction captures important properties of previous data structures, most notably garbled Bloom filters. While an encoding by a garbled Bloom filter is larger by a factor of $O(\lambda)$ than the original data, we describe a significantly improved PaXoS based on cuckoo hashing that achieves constant rate while being no worse in other relevant efficiency measures

Brown marmorated stink bug, Halyomorpha halys (Stål), genome: putative underpinnings of polyphagy, insecticide resistance potential and biology of a top worldwide pest

Background Halyomorpha halys (Stål), the brown marmorated stink bug, is a highly invasive insect species due in part to its exceptionally high levels of polyphagy. This species is also a nuisance due to overwintering in human-made structures. It has caused significant agricultural losses in recent years along the Atlantic seaboard of North America and in continental Europe. Genomic resources will assist with determining the molecular basis for this species’ feeding and habitat traits, defining potential targets for pest management strategies. Results Analysis of the 1.15-Gb draft genome assembly has identified a wide variety of genetic elements underpinning the biological characteristics of this formidable pest species, encompassing the roles of sensory functions, digestion, immunity, detoxification and development, all of which likely support H. halys’ capacity for invasiveness. Many of the genes identified herein have potential for biomolecular pesticide applications. Conclusions Availability of the H. halys genome sequence will be useful for the development of environmentally friendly biomolecular pesticides to be applied in concert with more traditional, synthetic chemical-based controls

Deep sequencing-based transcriptome analysis of Plutella xylostella larvae parasitized by Diadegma semiclausum

Background: Parasitoid insects manipulate their hosts' physiology by injecting various factors into their host upon parasitization. Transcriptomic approaches provide a powerful approach to study insect host-parasitoid interactions at the molecular level. In order to investigate the effects of parasitization by an ichneumonid wasp (Diadegma semiclausum) on the host (Plutella xylostella), the larval transcriptome profile was analyzed using a short-read deep sequencing method (Illumina). Symbiotic polydnaviruses (PDVs) associated with ichneumonid parasitoids, known as ichnoviruses, play significant roles in host immune suppression and developmental regulation. In the current study, D. semiclausum ichnovirus (DsIV) genes expressed in P. xylostella were identified and their sequences compared with other reported PDVs. Five of these genes encode proteins of unknown identity, that have not previously been reported