Effects of different concentrations of topotactic hydrogen impurities on the electronic structure of nickelate superconductors

Infinite-layer nickelate superconductors have recently been discovered to share both similarities and differences with cuprate superconductors. Notably, the incorporation of hydrogen (H) through topotactic reduction has been found to play a critical role in their electronic structure and, consequently, their superconductivity. In this study, we utilized a theoretical approach combining density-functional theory and impurity approximation to design three characteristic multi-orbital Hubbard models representing low, moderate, and high concentrations of topotactic-hydrogen. Consistent with experimental findings, our simulations revealed that both low and high concentrations of topotactic-hydrogen induce high-spin states ($S$=1) that are composed by holes at $d_{x^2-y^2}$ and $d_{z^2}$ orbitals and consequently the emergent inter-site hopping between $d_{z^2}$ to $d_{x^2-y^2}$ is unfavorable for superconductivity. Conversely, an optimal concentration of 25\% H aligns with the single Ni-$d_{x^2-y^2}$ band picture of superconductivity in infinite-layer nickelates, demonstrating its beneficial effect on promoting superconducting behavior.Comment: 9 pages, 6 figure

A New Searching Strategy for the Identification of O-Linked Glycopeptides

For the analysis of homogeneous post-translational modifications such as protein phosphorylation and acetylation, setting a variable modification on the specific residue(s) is applied to identify the modified peptides for database searching. However, this approach is often not applicable to identify intact mucin-type O-glycopeptides due to the high microheterogeneity of the glycosylation. Because there is virtually no carbohydrate-related tag on the peptide fragments after the O-glycopeptides are dissociated in HCD, we find it is unnecessary to set the variable mass tags on the Ser/Thr residues to identify the peptide sequences. In this study, we present a novel approach, termed as O-Search, for the interpretation of O-glycopeptide HCD spectra. Instead of setting the variable mass tags on the Ser/Thr residues, we set variable mass tags on the peptide level. The precursor mass of the MS/MS spectrum was deducted by every possible summed mass of O-glycan combinations on at most three S/T residues. All the spectra with these new precursor masses were searched against the protein sequence database without setting variable glycan modifications. It was found that this method had much decreased search space and had excellent sensitivity in the identification of O-glycopeptides. Compared with the conventional searching approach, O-Search yielded 96%, 86%, and 79% improvement in glycopeptide spectra matching, glycopeptide identification, and peptide sequence identification, respectively. It was demonstrated that O-Search enabled the consideration of more glycan structures and was fitted to analyze microheterogeneity of O-glycosylation

Continuous Fluorescence Imaging of Intracellular Calcium by Use of Ion-Selective Nanospheres with Adjustable Spectra

Continuous fluorescence imaging of intracellular ions in various spectral ranges is important for biological studies. In this paper, fluorescent calcium-selective nanospheres, including calix[4]­arene-functionalized bodipy (CBDP) or 9-(diethylamino)-5-[(2-octyldecyl)­imino]­benzo­[<i>a</i>]­phenoxazine (ETH 5350) as the chromoionophore, were prepared to demonstrate intracellular calcium imaging in visible or near-IR regions, respectively. The fluorescence of the nanospheres was controlled by the chromoionophore, and thus the spectral range for detection was adjustable by choosing the proper chromoionophore. The response time of the nanospheres to calcium was typically 1 s, which allowed accurate measurement of intracellular calcium. These nanospheres were loaded into cells through free endocytosis and exhibited fluorescence for 24 h, and their intensity was correlated with the elevation of intracellular calcium upon stimulation. The successful demonstration of calcium imaging by use of ion-selective nanospheres within two spectral ranges in 24 h supported that these nanospheres could be applied for continuous imaging of intracellular ions with adjustable spectra