4,614 research outputs found
Random sequential adsorption and diffusion of dimers and k-mers on a square lattice
We have performed extensive simulations of random sequential adsorption and
diffusion of -mers, up to in two dimensions with particular attention
to the case . We focus on the behavior of the coverage and of vacancy
dynamics as a function of time. We observe that for a complete coverage
of the lattice is never reached, because of the existence of frozen
configurations that prevent isolated vacancies in the lattice to join. From
this result we argue that complete coverage is never attained for any value of
. The long time behavior of the coverage is not mean field and nonanalytic,
with as leading term. Long time coverage regimes are independent of
the initial conditions while strongly depend on the diffusion probability and
deposition rate and, in particular, different values of these parameters lead
to different final values of the coverage. The geometrical complexity of these
systems is also highlighted through an investigation of the vacancy population
dynamics.Comment: 9 pages, 9 figures, to be published in the Journal of Chemical
Physic
Interaction-induced current-reversals in driven lattices
We demonstrate that long-range interactions can cause, as time evolves,
consecutive reversals of directed currents for dilute ensembles of particles in
driven lattices. These current-reversals are based on a general mechanism which
leads to an interaction-induced accumulation of particles in the regular
regions of the underlying single-particle phase space and to a synchronized
single-particle motion as well as an enhanced efficiency of Hamiltonian
ratchets.Comment: 5 pages, 5 figure
Correlations and pair emission in the escape dynamics of ions from one-dimensional traps
We explore the non-equilibrium escape dynamics of long-range interacting ions
in one-dimensional traps. The phase space of the few ion setup and its impact
on the escape properties are studied. As a main result we show that an
instantaneous reduction of the trap's potential depth leads to the synchronized
emission of a sequence of ion pairs if the initial configurations are close to
the crystalline ionic configuration. The corresponding time-intervals of the
consecutive pair emission as well as the number of emitted pairs can be tuned
by changing the final trap depth. Correlations between the escape times and
kinetic energies of the ions are observed and analyzed.Comment: 17 pages, 9 figure
Dynamical quantum phase transition of a two-component Bose-Einstein condensate in an optical lattice
We study dynamics of a two-component Bose-Einstein condensate where the two
components are coupled via an optical lattice. In particular, we focus on the
dynamics as one drives the system through a critical point of a first order
phase transition characterized by a jump in the internal populations. Solving
the time-dependent Gross-Pitaevskii equation, we analyze; breakdown of
adiabaticity, impact of non-linear atom-atom scattering, and the role of a
harmonic trapping potential. Our findings demonstrate that the phase transition
is resilient to both contact interaction between atoms and external trapping
confinement.Comment: 8 pages, 8 figure
Spin-orbit coupled Bose-Einstein condensate in a tilted optical lattice
Bloch oscillations appear for a particle in a weakly tilted periodic
potential. The intrinsic spin Hall effect is an outcome of a spin-orbit
coupling. We demonstrate that both these phenomena can be realized
simultaneously in a gas of weakly interacting ultracold atoms exposed to a
tilted optical lattice and to a set of spatially dependent light fields
inducing an effective spin-orbit coupling. It is found that both the spin Hall
as well as the Bloch oscillation effects may coexist, showing, however, a
strong correlation between the two. These correlations are manifested as a
transverse spin current oscillating in-phase with the Bloch oscillations.Comment: 12 pages, 7 figure
Circadian Organization in Hemimetabolous Insects
The circadian system of hemimetabolous insects is reviewed in respect to the locus of the circadian clock and multioscillatory organization. Because of relatively easy access to the nervous system, the neuronal organization of the clock system in hemimetabolous insects has been studied, yielding identification of the compound eye as the major photoreceptor for entrainment and the optic lobe for the circadian clock locus. The clock site within the optic lobe is inconsistent among reported species; in cockroaches the lobula was previously thought to be a most likely clock locus but accessory medulla is recently stressed to be a clock center, while more distal part of the optic lobe including the lamina and the outer medulla area for the cricket. Identification of the clock cells needs further critical studies. Although each optic lobe clock seems functionally identical, in respect to photic entrainment and generation of the rhythm, the bilaterally paired clocks form a functional unit. They interact to produce a stable time structure within individual insects by exchanging photic and temporal information through neural pathways, in which
serotonin and pigment-dispersing factor (PDF) are involved as chemical messengers. The mutual interaction also plays an important role in seasonal adaptation of the rhythm
Tempera: spatial transformer feature pyramid network for cardiac MRI segmentation
Assessing the structure and function of the right ventricle (RV) is important in the diagnosis of several cardiac pathologies. However, it remains more challenging to segment the RV than the left ventricle (LV). In this paper, we focus on segmenting the RV in both short (SA) and long-axis (LA) cardiac MR images simultaneously. For this task, we propose a new multi-input/output architecture, hybrid 2D/3D geometric spatial TransformEr Multi-Pass fEature pyRAmid (Tempera). Our feature pyramid extends current designs by allowing not only a multi-scale feature output but multi-scale SA and LA input images as well. Tempera transfers learned features between SA and LA images via layer weight sharing and incorporates a geometric target transformer to map the predicted SA segmentation to LA space. Our model achieves an average Dice score of 0.836 and 0.798 for the SA and LA, respectively, and 26.31 mm and 31.19 mm Hausdorff distances. This opens up the potential for the incorporation of RV segmentation models into clinical workflows
Definition of Virtual Reality simulation models using Specification and Description Language Diagrams
A full representation of a simulation model encompasses the
behavior of the elements that define the model, the definition of the
probability distributions that define the delays of the events that control
the model, the experimental framework needed for execution, and the
graphical representation of certain model elements. This paper aims to
use specification and description language to achieve a full model representation
by adding two extensions to the language, which allows for
a complete and unambiguous definition of a discrete simulation model
that is similar to a common discrete operations research simulation tool.Peer ReviewedPostprint (published version
Ionic strength and calcium regulate membrane interactions of myelin basic protein and the cytoplasmic domain of myelin protein zero
The formation of a mature myelin sheath in the vertebrate nervous system requires specific protein-membrane interactions. Several myelin-specific proteins are involved in stacking lipid membranes into multilayered structures around axons, and misregulation of these processes may contribute to chronic demyelinating diseases. Two key proteins in myelin membrane binding and stacking are the myelin basic protein (MBP) and protein zero (P0). Other factors, including Ca2+, are important for the regulation of myelination. We studied the effects of ionic strength and Ca2+ on the membrane interactions of MBP and the cytoplasmic domain of P0 (P0ct). MBP and P0ct bound and aggregated negatively charged lipid vesicles, while simultaneously folding, and both ionic strength and calcium had systematic effects on these interactions. When decreasing membrane net negative charge, the level and kinetics of vesicle aggregation were affected by both salt and Ca2+. The effects on lipid membrane surfaces by ions can directly affect myelin protein-membrane interactions, in addition to signalling effects in myelinating glia.publishedVersio
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