Iridium, shocked minerals, and trace elements across the Cretaceous/Tertiary boundary at Maud Rise, Wedell Sea, and Walvis Ridge, South Atlantic Ocean

Sediments spanning a 5 meter section across the Cretaceous-Tertiary boundary at ODP holes 689B and 690D, Maud Rise, Wedell Sea and hole 527, Walvis Ridge, are being analyzed for shock deformation, PGE's and other trace elements (including REE's). Mineral separates from each sample were studied with optical microscopy to determine the distribution and microstructural state of quartz and feldspar present in the sediments. Samples from Maud Rise were taken of the K/T transition and at about 50 cm intervals above and below it. These samples consist of carbonate-rich sediments, with the K/T transition marked by a change from white Maastrichtian oozes to a greenish ooze with higher concentrations of altered volcanic clay and vitric ash. The Walvis Ridge site is characterized by more clay-rich sediments with average carbonate content about 60 to 70 percent. Initial results from RNAA studies indicate that iridium is present in all the Maud Rise samples in concentrations equal to or greater than 0.01 ppb (whole-rock basis). Preliminary results from optical microscopy indicate the occurrence of shock mosaicism in quartz and feldspar in all of the samples studied. The pervasiveness of shock mosaicism and presence of planar features to 2 meters from the K/T boundary indicates that a single impact or volcanic explosion 66 ma may be ruled out as responsible for the K/T event. A similar conclusion may be drawn independently from the distribution of iridium and other trace elements. Regardless of the source of the shock waves and sediment contamination, multiple events are required over a ca.0.5 my timespan; currently we favor endogenous sources

THE DIMINISHMENT OF THE GREAT SIOUX RESERVATION TREATIES, TRICKS, AND TIME

Historically, Indian-white relations have been marred by mistrust and dishonesty. This is especially true in numerous land dealings between the United States government and the Lakota/ Dakota/Nakota people of the northern Great Plains. Indeed, the U.S. Supreme Court noted, A more ripe and rank case of dishonorable dealings will never, in all probability, be found in our history. 1 Our focus here is to chronicle and analyze the tragic diminishment of the Great Sioux Reservation, first established by the Fort Laramie Treaty of 1851.2 The land loss progressed with the Homestead Act of 1862, Fort Laramie Treaty of 1868, Act of 1877, Allotment Act of 1887, Act of 1889, the Wheeler-Howard Act, the Pick-Sloan Flood Control Act of 1944, and the Indian Land Consolidation Act. Today, the Lakota/Dakota/ Nakota people remain committed to reversing this trend by reacquiring lost tribal lands and reestablishing the prominence of their culture, language, customs, values, and beliefs. What we present is a multifaceted approach for tribes to consider in reacquiring lost lands. Although outright purchase of land is an option for any tribe, Brian Sawers recommends, because of the high cost of land, that tribes rely on incorporation and eminent domain to consolidate ownership and control allotted lands in a tribal enterprise.

THE DIMINISHMENT OF THE GREAT SIOUX RESERVATION TREATIES, TRICKS, AND TIME

Historically, Indian-white relations have been marred by mistrust and dishonesty. This is especially true in numerous land dealings between the United States government and the Lakota/ Dakota/Nakota people of the northern Great Plains. Indeed, the U.S. Supreme Court noted, A more ripe and rank case of dishonorable dealings will never, in all probability, be found in our history. 1 Our focus here is to chronicle and analyze the tragic diminishment of the Great Sioux Reservation, first established by the Fort Laramie Treaty of 1851.2 The land loss progressed with the Homestead Act of 1862, Fort Laramie Treaty of 1868, Act of 1877, Allotment Act of 1887, Act of 1889, the Wheeler-Howard Act, the Pick-Sloan Flood Control Act of 1944, and the Indian Land Consolidation Act. Today, the Lakota/Dakota/ Nakota people remain committed to reversing this trend by reacquiring lost tribal lands and reestablishing the prominence of their culture, language, customs, values, and beliefs. What we present is a multifaceted approach for tribes to consider in reacquiring lost lands. Although outright purchase of land is an option for any tribe, Brian Sawers recommends, because of the high cost of land, that tribes rely on incorporation and eminent domain to consolidate ownership and control allotted lands in a tribal enterprise.

Fatty acid profile driven by maternal diet is associated with the composition of human milk microbiota

Little is known regarding the impact of diet on the breast milk microbiome. We hypothesized that vegan, vegetarian, and omnivore diets would impact the human milk microbiota. We also aimed to explore associations between human milk fatty acid concentrations and microbial composition. A cross-sectional microbiome diversity analysis of human milk samples (N = 72) was performed using 16S rRNA amplicon sequencing. Human milk microbial diversity was not associated with diet type. However, analysis of microbiome in relation to fatty acid profiles revealed significant differences in the overall composition of the human milk microbiota between high (> 0.7% of total fat) and low ( 40%) versus low (60%) versus low (<60%) unsaturated fatty acids (UF) (UniFrac p = 0.094, PERMANOVA p = 0.093). 84% of samples from omnivore mothers were in the high TF group compared to only 12% of samples from vegans. Gut-associated species (Faecalibacterium, Blautia, Roseburia and Subdoligranulum) and Lactobacillus were characteristic of both high UF and TF groups, but not the low-fat groups. Functional analysis revealed 2,4-dichlorophenol 6-monooxygenase was differentially abundant in the high UF group. Although microbiome diversity did not differ by diet type, TF breast milk content differed by diet group, highlighting the relationship between maternal diet and the microbial profile of human milk

New genetic loci implicated in fasting glucose homeostasis and their impact on type 2 diabetes risk.

Levels of circulating glucose are tightly regulated. To identify new loci influencing glycemic traits, we performed meta-analyses of 21 genome-wide association studies informative for fasting glucose, fasting insulin and indices of beta-cell function (HOMA-B) and insulin resistance (HOMA-IR) in up to 46,186 nondiabetic participants. Follow-up of 25 loci in up to 76,558 additional subjects identified 16 loci associated with fasting glucose and HOMA-B and two loci associated with fasting insulin and HOMA-IR. These include nine loci newly associated with fasting glucose (in or near ADCY5, MADD, ADRA2A, CRY2, FADS1, GLIS3, SLC2A2, PROX1 and C2CD4B) and one influencing fasting insulin and HOMA-IR (near IGF1). We also demonstrated association of ADCY5, PROX1, GCK, GCKR and DGKB-TMEM195 with type 2 diabetes. Within these loci, likely biological candidate genes influence signal transduction, cell proliferation, development, glucose-sensing and circadian regulation. Our results demonstrate that genetic studies of glycemic traits can identify type 2 diabetes risk loci, as well as loci containing gene variants that are associated with a modest elevation in glucose levels but are not associated with overt diabetes

Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data

INTRODUCTION: Diverse microarray and sequencing technologies have been widely used to characterise the molecular changes in malignant epithelial cells in breast cancers. Such gene expression studies to identify markers and targets in tumour cells are, however, compromised by the cellular heterogeneity of solid breast tumours and by the lack of appropriate counterparts representing normal breast epithelial cells. METHODS: Malignant neoplastic epithelial cells from primary breast cancers and luminal and myoepithelial cells isolated from normal human breast tissue were isolated by immunomagnetic separation methods. Pools of RNA from highly enriched preparations of these cell types were subjected to expression profiling using massively parallel signature sequencing (MPSS) and four different genome wide microarray platforms. Functional related transcripts of the differential tumour epithelial transcriptome were used for gene set enrichment analysis to identify enrichment of luminal and myoepithelial type genes. Clinical pathological validation of a small number of genes was performed on tissue microarrays. RESULTS: MPSS identified 6,553 differentially expressed genes between the pool of normal luminal cells and that of primary tumours substantially enriched for epithelial cells, of which 98% were represented and 60% were confirmed by microarray profiling. Significant expression level changes between these two samples detected only by microarray technology were shown by 4,149 transcripts, resulting in a combined differential tumour epithelial transcriptome of 8,051 genes. Microarray gene signatures identified a comprehensive list of 907 and 955 transcripts whose expression differed between luminal epithelial cells and myoepithelial cells, respectively. Functional annotation and gene set enrichment analysis highlighted a group of genes related to skeletal development that were associated with the myoepithelial/basal cells and upregulated in the tumour sample. One of the most highly overexpressed genes in this category, that encoding periostin, was analysed immunohistochemically on breast cancer tissue microarrays and its expression in neoplastic cells correlated with poor outcome in a cohort of poor prognosis estrogen receptor-positive tumours. CONCLUSION: Using highly enriched cell populations in combination with multiplatform gene expression profiling studies, a comprehensive analysis of molecular changes between the normal and malignant breast tissue was established. This study provides a basis for the identification of novel and potentially important targets for diagnosis, prognosis and therapy in breast cancer

Guidelines for Modeling and Reporting Health Effects of Climate Change Mitigation Actions.

BACKGROUND: Modeling suggests that climate change mitigation actions can have substantial human health benefits that accrue quickly and locally. Documenting the benefits can help drive more ambitious and health-protective climate change mitigation actions; however, documenting the adverse health effects can help to avoid them. Estimating the health effects of mitigation (HEM) actions can help policy makers prioritize investments based not only on mitigation potential but also on expected health benefits. To date, however, the wide range of incompatible approaches taken to developing and reporting HEM estimates has limited their comparability and usefulness to policymakers. OBJECTIVE: The objective of this effort was to generate guidance for modeling studies on scoping, estimating, and reporting population health effects from climate change mitigation actions. METHODS: An expert panel of HEM researchers was recruited to participate in developing guidance for conducting HEM studies. The primary literature and a synthesis of HEM studies were provided to the panel. Panel members then participated in a modified Delphi exercise to identify areas of consensus regarding HEM estimation. Finally, the panel met to review and discuss consensus findings, resolve remaining differences, and generate guidance regarding conducting HEM studies. RESULTS: The panel generated a checklist of recommendations regarding stakeholder engagement: HEM modeling, including model structure, scope and scale, demographics, time horizons, counterfactuals, health response functions, and metrics; parameterization and reporting; approaches to uncertainty and sensitivity analysis; accounting for policy uptake; and discounting. DISCUSSION: This checklist provides guidance for conducting and reporting HEM estimates to make them more comparable and useful for policymakers. Harmonization of HEM estimates has the potential to lead to advances in and improved synthesis of policy-relevant research that can inform evidence-based decision making and practice. https://doi.org/10.1289/EHP6745

Host Cell Factors in HIV Replication: Meta-Analysis of Genome-Wide Studies

We have analyzed host cell genes linked to HIV replication that were identified in nine genome-wide studies, including three independent siRNA screens. Overlaps among the siRNA screens were very modest (<7% for any pairwise combination), and similarly, only modest overlaps were seen in pairwise comparisons with other types of genome-wide studies. Combining all genes from the genome-wide studies together with genes reported in the literature to affect HIV yields 2,410 protein-coding genes, or fully 9.5% of all human genes (though of course some of these are false positive calls). Here we report an “encyclopedia” of all overlaps between studies (available at http://www.hostpathogen.org), which yielded a more extensively corroborated set of host factors assisting HIV replication. We used these genes to calculate refined networks that specify cellular subsystems recruited by HIV to assist in replication, and present additional analysis specifying host cell genes that are attractive as potential therapeutic targets

Linking soil microbial community structure to potential carbon mineralization: A continental scale assessment of reduced tillage

Potential carbon mineralization (Cmin) is a commonly used indicator of soil health, with greater Cmin values interpreted as healthier soil. While Cmin values are typically greater in agricultural soils managed with minimal physical disturbance, the mechanisms driving the increases remain poorly understood. This study assessed bacterial and archaeal community structure and potential microbial drivers of Cmin in soils maintained under various degrees of physical disturbance. Potential carbon mineralization, 16S rRNA sequences, and soil characterization data were collected as part of the North American Project to Evaluate Soil Health Measurements (NAPESHM). Results showed that type of cropping system, intensity of physical disturbance, and soil pH influenced microbial sensitivity to physical disturbance. Furthermore, 28% of amplicon sequence variants (ASVs), which were important in modeling Cmin, were enriched under soils managed with minimal physical disturbance. Sequences identified as enriched under minimal disturbance and important for modeling Cmin, were linked to organisms which could produce extracellular polymeric substances and contained metabolic strategies suited for tolerating environmental stressors. Understanding how physical disturbance shapes microbial communities across climates and inherent soil properties and drives changes in Cmin provides the context necessary to evaluate management impacts on standardized measures of soil microbial activity

Carbon-sensitive pedotransfer functions for plant available water

Currently accepted pedotransfer functions show negligible effect of management-induced changes to soil organic carbon (SOC) on plant available water holding capacity (θAWHC), while some studies show the ability to substantially increase θAWHC through management. The Soil Health Institute\u27s North America Project to Evaluate Soil Health Measurements measured water content at field capacity using intact soil cores across 124 long-term research sites that contained increases in SOC as a result of management treatments such as reduced tillage and cover cropping. Pedotransfer functions were created for volumetric water content at field capacity (θFC) and permanent wilting point (θPWP). New pedotransfer functions had predictions of θAWHC that were similarly accurate compared with Saxton and Rawls when tested on samples from the National Soil Characterization database. Further, the new pedotransfer functions showed substantial effects of soil calcareousness and SOC on θAWHC. For an increase in SOC of 10 g kg–1 (1%) in noncalcareous soils, an average increase in θAWHC of 3.0 mm 100 mm–1 soil (0.03 m3 m–3) on average across all soil texture classes was found. This SOC related increase in θAWHC is about double previous estimates. Calcareous soils had an increase in θAWHC of 1.2 mm 100 mm–1 soil associated with a 10 g kg–1 increase in SOC, across all soil texture classes. New equations can aid in quantifying benefits of soil management practices that increase SOC and can be used to model the effect of changes in management on drought resilience