EU-IndiaGrid2 sustainable e-Infrastructures across Europe and India

EU-IndiaGrid2 - Sustainable e-infrastructures across Europe and India – is a project funded by European Commission under the Research Infrastructure Programme of the Information and Society Directorate General with the specific aim of promoting international interoperation between European and Indian e-Infrastructures. 2010 has been an eventful year for e-Infrastructures across Europe and India with a number of important achievements. EU-Indiagrid2, basing on the achievements of the previous EU-IndiaGrid project and on the active role of its partners was at the core of all these events that contributed significantly to the project progress towards its objectives. The present article reviews the most recent e-Infrastructures developments in India and their relationship with respect to Europe and the Asia-Pacific area

Applications Exploiting e-Infrastructures Across Europe and India Within the EU-IndiaGrid Project

In the last few years e-Infrastructures across Europe and India faced remarkable developments. Both national and international connectivity improved considerably and Grid Computing also profited of significant developments. As a consequence scientific applications were in the position of taking substantial benefits from this progress. The most relevant cases are represented by High Energy Physics (with the contribution to the program of Large Hadron Collider at CERN, Geneva) and Nano Science (exploiting NKN-TEIN3-GEANT interconnection for crystallography experiments with the remote access & control of experimental facility at the ESRF Synchrotron based in Grenoble, France directly from Mumbai, India). Other relevant application areas include Climate Change research, Biology, and several areas in Material Science. Within this framework, in the last five years period two specific EU funded projects (the EU-IndiaGrid and EU-IndiaGrid2) played a bridging role supporting several applications that exploited these advanced e-Infrastructures for the benefit of Euro-India common research programs. A crucial important part in the projects activity was the support offered to selected applications which ranges from the training the user communities behind up to the porting of their scientific applications on the grid computing infrastructure. This article aims to present and review the main e Infrastructures development in India and their full exploitation by scientific applications with a focus on the role played by the EUIndiaGrid and EU-IndiaGrid2 projects

The Effect of the Introduced Red Wood Ant Formica paralugubris on the Frequency of Ant Nests and First Plesiobiotic Association between Myrmica ruginodis (Nylander, 1846) and Lasius flavus (Fabricius, 1782)

Red wood ants are ecologically dominant species that affect the composition of the invertebrate community. In the past century, one of these species, Formica paralugubris (Seifert 1996), was introduced outside its native area (the Alps), in the Apennines (Italy). Here we investigated the effect of the presence of an introduced population of F. paralugubris on the frequency of nests of other ant species in Abetone, Central Apennines. Ant nests were found only in the area unoccupied by F. paralugubris. In this area, we also found one pleometrotic association between queens of Lasius flavus (Fabricius, 1782) and two plesiobiotic associations, one between Formica fusca (Linnaeus, 1758) and L. flavus and the other one between Myrmica ruginodis (Nylander, 1846) and L. flavus. This latter is the first plesiobiotic relationship reported between these two species, the second reported for M. ruginodis and the 10th for L. flavus. Additionally, this is the first plesiobiotic association reported for the Mediterranean region and Southern Europe

Genetic variability assessment of 127 Triticum turgidum L. accessions for mycorrhizal susceptibility-related traits detection

Positive effects of arbuscular mycorrhizal fungi (AMF)—wheat plant symbiosis have been well discussed by research, while the actual role of the single wheat genotype in establishing this type of association is still poorly investigated. In this work, the genetic diversity of Triticum turgidum wheats was exploited to detect roots susceptibility to AMF and to identify genetic markers in linkage with chromosome regions involved in this symbiosis. A tetraploid wheat collection of 127 accessions was genotyped using 35K single-nucleotide polymorphism (SNP) array and inoculated with the AMF species Funneliformis mosseae (F. mosseae) and Rhizoglomus irregulare (R. irregulare), and a genome‐wide association study (GWAS) was conducted. Six clusters of genetically related accessions were identified, showing a different mycorrhizal colonization among them. GWAS revealed four significant quantitative trait nucleotides (QTNs) involved in mycorrhizal symbiosis, located on chromosomes 1A, 2A, 2B and 6A. The results of this work enrich future breeding activities aimed at developing new grains on the basis of genetic diversity on low or high susceptibility to mycorrhization, and, possibly, maximizing the symbiotic effects

Genome wide association study of agronomic and seed traits in a world collection of proso millet (Panicum miliaceum L.)

The climate crisis threatens sustainability of crop production worldwide. Crop diversification may enhance food security while reducing the negative impacts of climate change. Proso millet (Panicum milaceum L.) is a minor cereal crop which holds potential for diversification and adaptation to different environmental conditions. In this study, we assembled a world collection of proso millet consisting of 88 varieties and landraces to investigate its genomic and phenotypic diversity for seed traits, and to identify marker-trait associations (MTA)

Sub-lethal doses of imidacloprid alter food selection in the invasive garden ant Lasius neglectus

Despite several restrictions to their use, neonicotinoid insecticides are still widely employed worldwide. Residual sub-lethal amounts of these chemicals can have detrimental effects on the behavior of non-target insects. Toxic effects on economically important species such as bees have been widely documented, but less is known about their toxic action on other social insects, such as ants. In this study, we assessed the effect of different sub-lethal doses of the neonicotinoid imidacloprid on the ability of colonies of the invasive ant Lasius neglectus to select the most profitable resource. We used Y-shaped mazes having an imidacloprid-polluted or an unpolluted sucrose solution on the two branches. Two sucrose (0.1 M, 0.5 M) and two imidacloprid (1 μg/ml, 10 μg/ml) concentrations were used. In parallel, we evaluated the marking activity of foragers who fed on the same solutions. We found that the 0.1 M sugar solution polluted with 1 μg/ml imidacloprid was significantly more frequently selected in binary choices experiments than the unpolluted resource. Moreover, the ingestion of the same combination of sugar and imidacloprid significantly increased the marking rate of foragers. The higher concentration of the pollutant had lower effects, probably because of the hormesis phenomenon. Results suggest that the lower sub-lethal dose of imidacloprid can lead ants to select again the polluted resource. This “active” selection of the pollutant may magnify the negative effects on the colonies. Due to their ecological role, any impairment of ant survival or behavior may have detrimental cascade effects on the whole ecosystem.info:eu-repo/semantics/publishedVersio

Spatial variation of the aggressive response towards conspecifics in the ant Crematogaster scutellaris (Hymenoptera Formicidae)

In this study we investigated the relationship between spatial distance and intraspecific aggression in the Mediterranean tree-nesting ant Crematogaster scutellaris. Aggression tests were carried out in the field confronting group of workers (20 from each nest) collected from pairs of nests located at increasing distances one from the other (5, 10, 20, 40 and 80 meters). For each distance, 6 replicate tests, using different pairs of nests, were carried out. The probability of aggression and the time of the first aggressive event were recorded and modelled as a function of the distance between two nests using generalised linear models. Results showed that both the probability of aggression and the time of first attack were correlated to spatial distance in a complex way, having their maximum at intermediate distances between nests. The observed relationship cannot be simply interpreted according to the “dear enemy” or the “nasty neighbour” effects and contains elements in favour of both

Application of CO 2 carbon stable isotope analysis to ant trophic ecology

Stable isotope analysis of animal tissues is commonly used to infer diet and trophic position. However, it requires destructive sampling. The analysis of carbon isotopes from exhaled CO2 is non-invasive and can provide useful ecological information because isotopic CO2 signatures can reflect the diet and metabolism of an animal. However, this methodology has rarely been used on invertebrates and never on social insects. Here, we first tested whether this method reflects differences in δ13C-CO2 between workers of the Mediterranean ant Crematogaster scutellaris (Olivier) (Hymenoptera: Formicidae, Crematogastrini) fed with sugar from beet (C3; Beta vulgaris L., Amaranthaceae) or cane (C4; Saccharum officinarum L., Poaceae). We found that a significant difference can be obtained after 24 h. Consequently, we used this technique on wild co-occurring ant species with different feeding preferences to assess their reliance on C3 or C4 sources. For this purpose, we sampled workers of C. scutellaris, the invasive garden ant Lasius neglectus (van Loon et al.) (Lasiini), and the harvester ant Messor capitatus (Latreille) (Stenammini). No significant differences in their carbon isotopic signatures were recorded, suggesting that in our study site no niche partitioning occurs based on the carbon pathway, with all species sharing similar resources. However, further analysis revealed that M. capitatus, a seed-eating ant, can be regarded as a C3 specialist, whereas L. neglectus and C. scutellaris are generalists that rely on both C3 and C4 pathways, though with a preference for the former. Our results show that this methodology can be applied even to small animals such as ants and can provide useful information on the diets of generalist omnivores.info:eu-repo/semantics/publishedVersio

Exploring the Gut Microbiome Alteration of the European Hare (Lepus europaeus) after Short-Term Diet Modifications

This study aimed to characterise the gut microbiome composition of European hares (Lepus europaeus) and its potential changes after a short-term diet modification. The high sensitivity of European hare to habitat changes makes this species a good model to analyse possible alterations in gut microbiome after the introduction of additional nourishment into the diet. In total, 20 pairs were chosen for the experiments; 10 pairs formed the control group and were fed with standard fodder. The other 10 pairs represented the experimental group, whose diet was integrated with apples and carrots. The DNA from fresh faecal pellets collected after 4 days from the start of the experiment was extracted and the V3-V4 hypervariable regions were amplified and sequenced using the Illumina MiSeq® platform. The obtained amplicon sequence variants were classified into 735 bacterial genera belonging to 285 families and 36 phyla. The control and the experimental groups appeared to have a homogenous dispersion for the two taxonomic levels analysed with the most abundant phyla represented by Bacteroidetes and Firmicutes. No difference between control and experimental samples was detected, suggesting that the short-term variation in food availability did not alter the hares’ gut microbiome. Further research is needed to estimate significant time threshold