Physical limitations to the spatial resolution of solid-state detectors

In this paper we explore the effect of $\delta$-ray emission, fluctuations in th e signal deposition on the detection of charged particles in silicon-based detec tors. We show that these two effects ultimately limit the resolution that can be achieved by interpolation of the signal in finely segmented position-sensitive solid-state devices.Comment: 5 page

Sharp crossover from composite fermionization to phase separation in mesoscopic mixtures of ultracold bosons

We show that a two-component mixture of a few repulsively interacting ultracold atoms in a one-dimensional trap possesses very different quantum regimes and that the crossover between them can be induced by tuning the interactions in one of the species. In the composite fermionization regime, where the interactions between both components are large, none of the species show large occupation of any natural orbital. Our results show that by increasing the interaction in one of the species, one can reach the phase-separated regime. In this regime, the weakly interacting component stays at the center of the trap and becomes almost fully phase coherent, while the strongly interacting component is displaced to the edges of the trap. The crossover is sharp, as observed in the in the energy and the in the largest occupation of a natural orbital of the weakly interacting species. Such a transition is a purely mesoscopic effect which disappears for large atom numbers.Comment: 5 pages, 3 figure

Impacto de Parámetros de QoS en Aspectos de QoE: Análisis desde el Punto de Vista de la Sincronización Multimedia

La sincronización multimedia ha sido un área de investigación clave desde los inicios de los sistemas multimedia. En este artículo se ofrecen una visión general y un análisis sobre el impacto de varios parámetros de QoS en diferentes aspectos de la QoE, desde el punto de vista de la sincronización multimedia. En primer lugar, se presentan los diferentes tipos de sincronización multimedia y su relevancia para garantizar una QoE satisfactoria. En segundo lugar, se muestra que la magnitud de los retardos y su variabilidad en las redes actuales es bastante superior a los umbrales permisibles por los usuarios en diferentes tipos y ejemplos de sincronización multimedia, reflejando así su necesidad. En tercer lugar, se describe el impacto del ancho de banda y la tasa de pérdidas sobre la sincronización multimedia. Por último, se argumenta la influencia del uso de diferentes alternativas para conseguir la sincronización multimedia sobre varios factores de QoS y de QoE

PVS: a web server for protein sequence variability analysis tuned to facilitate conserved epitope discovery

We have developed PVS (Protein Variability Server), a web-based tool that uses several variability metrics to compute the absolute site variability in multiple protein-sequence alignments (MSAs). The variability is then assigned to a user-selected reference sequence consisting of either the first sequence in the alignment or a consensus sequence. Subsequently, PVS performs tasks that are relevant for structure-function studies, such as plotting and visualizing the variability in a relevant 3D-structure. Neatly, PVS also implements some other tasks that are thought to facilitate the design of epitope discovery-driven vaccines against pathogens where sequence variability largely contributes to immune evasion. Thus, PVS can return the conserved fragments in the MSA—as defined by a user-provided variability threshold—and locate them in a relevant 3D-structure. Furthermore, PVS can return a variability-masked sequence, which can be directly submitted to the RANKPEP server for the prediction of conserved T-cell epitopes. PVS is freely available at: http://imed.med.ucm.es/PVS/

Optimization of atmospheric plasma treatment of LDPE films: Influence on adhesive properties and ageing behavior

One of the major disadvantages of low density polyethylene (LDPE) films is their poor adhesive properties. Therefore, LDPE films have been treated with atmospheric pressure air plasma in order to improve their surface properties. So as to simulate the possible conditions in an industrial process, the samples have been treated with two different sample distances (6 and 10 mm), and treatment rates between 100 and 1000 mm s-1. The different sample distances are the distance of the sample from the plasma source. The variation of the surface properties and adhesion characteristics of the films were investigated for different aging times after plasma exposure (up to 21 days) using contact angle measurement, atomic force microscopy, weight loss measurements and shear test. Results show that the treatment increases the polar component () and these changes improve adhesive properties of the material. After the twenty-first day, the ageing process causes a decrease of wettability and adhesive properties of the LDPE films (up to 60%).Fombuena Borrás, V.; García Sanoguera, D.; Sánchez Nacher, L.; Balart Gimeno, RA.; Boronat Vitoria, T. (2014). Optimization of atmospheric plasma treatment of LDPE films: Influence on adhesive properties and ageing behavior. Journal of Adhesion Science and Technology. 28(1):97-113. doi:10.1080/01694243.2013.847045S97113281Achilias, D. S., Roupakias, C., Megalokonomos, P., Lappas, A. A., & Antonakou, Ε. V. (2007). Chemical recycling of plastic wastes made from polyethylene (LDPE and HDPE) and polypropylene (PP). Journal of Hazardous Materials, 149(3), 536-542. doi:10.1016/j.jhazmat.2007.06.076Friedman, M., & Walsh, G. (2002). High performance films: Review of new materials and trends. Polymer Engineering & Science, 42(8), 1756-1788. doi:10.1002/pen.11069Wiles, D. M., & Scott, G. (2006). Polyolefins with controlled environmental degradability. Polymer Degradation and Stability, 91(7), 1581-1592. doi:10.1016/j.polymdegradstab.2005.09.010Gao, J., Lei, J., Li, Q., & Ye, S. (2004). Functionalized low-density polyethylene via a novel photografting method and its adhesion properties. Journal of Adhesion Science and Technology, 18(2), 195-203. doi:10.1163/156856104772759403Shenton, M. J., Lovell-Hoare, M. C., & Stevens, G. C. (2001). Adhesion enhancement of polymer surfaces by atmospheric plasma treatment. Journal of Physics D: Applied Physics, 34(18), 2754-2760. doi:10.1088/0022-3727/34/18/307Belgacem, M. N., Salon-Brochier, M. C., Krouit, M., & Bras, J. (2011). Recent Advances in Surface Chemical Modification of Cellulose Fibres. Journal of Adhesion Science and Technology, 25(6-7), 661-684. doi:10.1163/016942410x525867Friedrich, J., Unger, W., & Lippitz, A. (1995). Plasma modification of polymer surfaces. Macromolecular Symposia, 100(1), 111-115. doi:10.1002/masy.19951000118Ladizesky, N. H., & Ward, I. M. (1989). 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Study of Surface Properties of Polyolefins Modified by Corona Discharge Plasma. Plasma Processes and Polymers, 3(4-5), 355-364. doi:10.1002/ppap.200500163Arpagaus, C., Rossi, A., & Rudolf von Rohr, P. (2005). Short-time plasma surface modification of HDPE powder in a Plasma Downer Reactor – process, wettability improvement and ageing effects. Applied Surface Science, 252(5), 1581-1595. doi:10.1016/j.apsusc.2005.02.099Morra, M., Occhiello, E., Marola, R., Garbassi, F., Humphrey, P., & Johnson, D. (1990). On the aging of oxygen plasma-treated polydimethylsiloxane surfaces. Journal of Colloid and Interface Science, 137(1), 11-24. doi:10.1016/0021-9797(90)90038-pKim, K. S., Ryu, C. M., Park, C. S., Sur, G. S., & Park, C. E. (2003). Investigation of crystallinity effects on the surface of oxygen plasma treated low density polyethylene using X-ray photoelectron spectroscopy. Polymer, 44(20), 6287-6295. doi:10.1016/s0032-3861(03)00674-8Kim, S. H., Ha, H. J., Ko, Y. K., Yoon, S. J., Rhee, J. M., Kim, M. S., … Khang, G. (2007). Correlation of proliferation, morphology and biological responses of fibroblasts on LDPE with different surface wettability. Journal of Biomaterials Science, Polymer Edition, 18(5), 609-622. doi:10.1163/156856207780852514Borcia, G., Anderson, C. A., & Brown, N. M. D. (2004). The surface oxidation of selected polymers using an atmospheric pressure air dielectric barrier discharge. Part I. Applied Surface Science, 221(1-4), 203-214. doi:10.1016/s0169-4332(03)00879-1Pascual, M., Calvo, O., Sanchez-Nácher, L., Bonet, M. A., Garcia-Sanoguera, D., & Balart, R. (2009). Optimization of adhesive joints of low density polyethylene (LDPE) composite laminates with polyolefin foam using corona discharge plasma. Journal of Applied Polymer Science, 114(5), 2971-2977. doi:10.1002/app.30906Encinas, N., Díaz-Benito, B., Abenojar, J., & Martínez, M. A. (2010). Extreme durability of wettability changes on polyolefin surfaces by atmospheric pressure plasma torch. Surface and Coatings Technology, 205(2), 396-402. doi:10.1016/j.surfcoat.2010.06.069Takke, V., Behary, N., Perwuelz, A., & Campagne, C. (2009). Studies on the atmospheric air-plasma treatment of PET (polyethylene terephtalate) woven fabrics: Effect of process parameters and of aging. Journal of Applied Polymer Science, 114(1), 348-357. doi:10.1002/app.30618Awaja, F., Gilbert, M., Kelly, G., Fox, B., & Pigram, P. J. (2009). Adhesion of polymers. Progress in Polymer Science, 34(9), 948-968. doi:10.1016/j.progpolymsci.2009.04.007Garcia, D., Sanchez, L., Fenollar, O., Lopez, R., & Balart, R. (2008). Modification of polypropylene surface by CH4–O2 low-pressure plasma to improve wettability. Journal of Materials Science, 43(10), 3466-3473. doi:10.1007/s10853-007-2322-2Guimond, S., & Wertheimer, M. R. (2004). Surface degradation and hydrophobic recovery of polyolefins treated by air corona and nitrogen atmospheric pressure glow discharge. Journal of Applied Polymer Science, 94(3), 1291-1303. doi:10.1002/app.21134Pascual, M., Balart, R., Sánchez, L., Fenollar, O., & Calvo, O. (2008). Study of the aging process of corona discharge plasma effects on low density polyethylene film surface. Journal of Materials Science, 43(14), 4901-4909. doi:10.1007/s10853-008-2712-0Sanchis, R., Fenollar, O., García, D., Sánchez, L., & Balart, R. (2008). Improved adhesion of LDPE films to polyolefin foams for automotive industry using low-pressure plasma. International Journal of Adhesion and Adhesives, 28(8), 445-451. doi:10.1016/j.ijadhadh.2008.04.002Fresnais, J., Chapel, J. P., Benyahia, L., & Poncin-Epaillard, F. (2009). Plasma-Treated Superhydrophobic Polyethylene Surfaces: Fabrication, Wetting and Dewetting Properties. Journal of Adhesion Science and Technology, 23(3), 447-467. doi:10.1163/156856108x370127Abenojar, J., Colera, I., Martínez, M. A., & Velasco, F. (2010). Study by XPS of an Atmospheric Plasma-Torch Treated Glass: Influence on Adhesion. Journal of Adhesion Science and Technology, 24(11-12), 1841-1854. doi:10.1163/016942410x507614Lommatzsch, U., Pasedag, D., Baalmann, A., Ellinghorst, G., & Wagner, H.-E. (2007). Atmospheric Pressure Plasma Jet Treatment of Polyethylene Surfaces for Adhesion Improvement. Plasma Processes and Polymers, 4(S1), S1041-S1045. doi:10.1002/ppap.200732402Balu, B., Berry, A. D., Patel, K. T., Breedveld, V., & Hess, D. W. (2011). Directional Mobility and Adhesion of Water Drops on Patterned Superhydrophobic Surfaces. Journal of Adhesion Science and Technology, 25(6-7), 627-642. doi:10.1163/016942410x525849Bhattacharya, S., Singh, R. K., Mandal, S., Ghosh, A., Bok, S., Korampally, V., … Gangopadhyay, S. (2010). Plasma Modification of Polymer Surfaces and Their Utility in Building Biomedical Microdevices. Journal of Adhesion Science and Technology, 24(15-16), 2707-2739. doi:10.1163/016942410x511105Das, S., Neogi, S., Chainy, G. B. N., & Guha, S. K. (2011). A Novel Two-Step Procedure for Plasma Surface Modification of Low-Density Polyethylene for Improved Drug Adhesion in Intra Uterine Devices (IUDs). Journal of Adhesion Science and Technology, 25(1-3), 151-167. doi:10.1163/016942410x503285Schulz, U., Munzert, P., & Kaiser, N. (2010). Plasma Surface Modification of PMMA for Optical Applications. Journal of Adhesion Science and Technology, 24(7), 1283-1289. doi:10.1163/016942409x12561252292026Silverstein, M. S., Breuer, O., & Dodiuk, H. (1994). Surface modification of UHMWPE fibers. Journal of Applied Polymer Science, 52(12), 1785-1795. doi:10.1002/app.1994.070521213Inagaki, N., Narushim, K., Tuchida, N., & Miyazaki, K. (2004). Surface characterization of plasma-modified poly(ethylene terephthalate) film surfaces. Journal of Polymer Science Part B: Polymer Physics, 42(20), 3727-3740. doi:10.1002/polb.20234Nakamatsu, J., Delgado-Aparicio, L. F., Da Silva, R., & Soberon, F. (1999). Ageing of plasma-treated poly(tetrafluoroethylene) surfaces. Journal of Adhesion Science and Technology, 13(7), 753-761. doi:10.1163/156856199x00983Yun, Y. I., Kim, K. S., Uhm, S.-J., Khatua, B. B., Cho, K., Kim, J. K., & Park, C. E. (2004). Aging behavior of oxygen plasma-treated polypropylene with different crystallinities. Journal of Adhesion Science and Technology, 18(11), 1279-1291. doi:10.1163/1568561041588200Morent, R., De Geyter, N., Leys, C., Gengembre, L., & Payen, E. (2007). Study of the ageing behaviour of polymer films treated with a dielectric barrier discharge in air, helium and argon at medium pressure. Surface and Coatings Technology, 201(18), 7847-7854. doi:10.1016/j.surfcoat.2007.03.018Zhao, B., & Kwon, H. J. (2011). Adhesion of Polymers in Paper Products from the Macroscopic to Molecular Level — An Overview. Journal of Adhesion Science and Technology, 25(6-7), 557-579. doi:10.1163/016942410x52582

X chromosome inactivation does not necessarily determine the severity of the phenotype in Rett syndrome patients

Rett syndrome (RTT) is a severe neurological disorder usually caused by mutations in the MECP2 gene. Since the MECP2 gene is located on the X chromosome, X chromosome inactivation (XCI) could play a role in the wide range of phenotypic variation of RTT patients; however, classical methylation-based protocols to evaluate XCI could not determine whether the preferentially inactivated X chromosome carried the mutant or the wild-type allele. Therefore, we developed an allele-specific methylation-based assay to evaluate methylation at the loci of several recurrent MECP2 mutations. We analyzed the XCI patterns in the blood of 174 RTT patients, but we did not find a clear correlation between XCI and the clinical presentation. We also compared XCI in blood and brain cortex samples of two patients and found differences between XCI patterns in these tissues. However, RTT mainly being a neurological disease complicates the establishment of a correlation between the XCI in blood and the clinical presentation of the patients. Furthermore, we analyzed MECP2 transcript levels and found differences from the expected levels according to XCI. Many factors other than XCI could affect the RTT phenotype, which in combination could influence the clinical presentation of RTT patients to a greater extent than slight variations in the XCI pattern

PREDIVAC: CD4+T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity

Background: CD4+ T-cell epitopes play a crucial role in eliciting vigorous protective immune responses during peptide (epitope)-based vaccination. The prediction of these epitopes focuses on the peptide binding process by MHC class II proteins. The ability to account for MHC class II polymorphism is critical for epitope-based vaccine design tools, as different allelic variants can have different peptide repertoires. In addition, the specificity of CD4+ T-cells is often directed to a very limited set of immunodominant peptides in pathogen proteins. The ability to predict what epitopes are most likely to dominate an immune response remains a challenge