Shedding light on plant litter decomposition: Advances, implications and new directions in understanding the role of photodegradation

Litter decomposition contributes to one of the largest fluxes of carbon (C) in the terrestrial biosphere and is a primary control on nutrient cycling. The inability of models using climate and litter chemistry to predict decomposition in dry environments has stimulated investigation of non-traditional drivers of decomposition, including photodegradation, the abiotic decomposition of organic matter via exposure to solar radiation. Recent work in this developing field shows that photodegradation may substantially influence terrestrial C fluxes, including abiotic production of carbon dioxide, carbon monoxide and methane, especially in arid and semi-arid regions. Research has also produced contradictory results regarding controls on photodegradation. Here we summarize the state of knowledge about the role of photodegradation in litter decomposition and C cycling and investigate drivers of photodegradation across experiments using a meta-analysis. Overall, increasing litter exposure to solar radiation increased mass loss by 23% with large variation in photodegradation rates among and within ecosystems. This variation was tied to both litter and environmental characteristics. Photodegradation increased with litter C to nitrogen (N) ratio, but not with lignin content, suggesting that we do not yet fully understand the underlying mechanisms. Photodegradation also increased with factors that increased solar radiation exposure (latitude and litter area to mass ratio) and decreased with mean annual precipitation. The impact of photodegradation on C (and potentially N) cycling fundamentally reshapes our thinking of decomposition as a solely biological process and requires that we define the mechanisms driving photodegradation before we can accurately represent photodegradation in global C and N models. © 2012 US Government

Effects of UV photodegradation on subsequent microbial decomposition of Bromus diandrus litter

Aims: Photodegradation acts as a direct contributor to litter decomposition in arid and semi-arid ecosystems. However, its indirect effects are unclear. Does photodegradation condition litter for subsequent microbial decomposition? Methods: We conditioned litter of Bromus diandrus with ambient or reduced ultraviolet (UV) radiation and three periods of exposure (summer, summer-winter, and 1 year) in a California annual grassland. We then investigated how field UV exposure affected subsequent microbial decomposition of litter using a controlled laboratory incubation. Results: Surprisingly, microbial decomposition was decreased by UV radiation when the exposure occurred during summer but was unaffected by UV treatment for exposure longer than summer. Litter lignin concentrations did not explain these results, as they were not affected by UV radiation for any of the exposure periods. However, for the summer period exposure, UV radiation was associated with decreased litter N concentration, which corresponded with lowered subsequent microbial activity. Conclusions: Our results suggest a new mechanism through which photodegradation interacts with litter microbial decomposition: photodegradation may decrease microbial decomposition through inhibition of microbial N immobilization. Our results imply that solar radiation can interact with litter N cycling dynamics to influence litter decomposition processes

Structural Genomics of Minimal Organisms: Pipeline and Results

The initial objective of the Berkeley Structural Genomics Center was to obtain a near complete three-dimensional (3D) structural information of all soluble proteins of two minimal organisms, closely related pathogens Mycoplasma genitalium and M. pneumoniae. The former has fewer than 500 genes and the latter has fewer than 700 genes. A semiautomated structural genomics pipeline was set up from target selection, cloning, expression, purification, and ultimately structural determination. At the time of this writing, structural information of more than 93percent of all soluble proteins of M. genitalium is avail able. This chapter summarizes the approaches taken by the authors' center

Advances in photonic quantum sensing

Quantum sensing has become a mature and broad field. It is generally related with the idea of using quantum resources to boost the performance of a number of practical tasks, including the radar-like detection of faint objects, the readout of information from optical memories or fragile physical systems, and the optical resolution of extremely close point-like sources. Here we first focus on the basic tools behind quantum sensing, discussing the most recent and general formulations for the problems of quantum parameter estimation and hypothesis testing. With this basic background in our hands, we then review emerging applications of quantum sensing in the photonic regime both from a theoretical and experimental point of view. Besides the state-of-the-art, we also discuss open problems and potential next steps.Comment: Review in press on Nature Photonics. This is a preliminary version to be updated after publication. Both manuscript and reference list will be expande

Induction chemotherapy followed by chemoradiotherapy versus chemoradiotherapy alone as neoadjuvant treatment for locally recurrent rectal cancer: study protocol of a multicentre, open-label, parallel-arms, randomized controlled study (PelvEx II)

Background A resection with clear margins (R0 resection) is the most important prognostic factor in patients with locally recurrent rectal cancer (LRRC). However, this is achieved in only 60 per cent of patients. The aim of this study is to investigate whether the addition of induction chemotherapy to neoadjuvant chemo(re)irradiation improves the R0 resection rate in LRRC. Methods This multicentre, international, open-label, phase III, parallel-arms study will enrol 364 patients with resectable LRRC after previous partial or total mesorectal resection without synchronous distant metastases or recent chemo- and/or radiotherapy treatment. Patients will be randomized to receive either induction chemotherapy (three 3-week cycles of CAPOX (capecitabine, oxaliplatin), four 2-week cycles of FOLFOX (5-fluorouracil, leucovorin, oxaliplatin) or FOLFORI (5-fluorouracil, leucovorin, irinotecan)) followed by neoadjuvant chemoradiotherapy and surgery (experimental arm) or neoadjuvant chemoradiotherapy and surgery alone (control arm). Tumours will be restaged using MRI and, in the experimental arm, a further cycle of CAPOX or two cycles of FOLFOX/FOLFIRI will be administered before chemoradiotherapy in case of stable or responsive disease. The radiotherapy dose will be 25 × 2.0 Gy or 28 × 1.8 Gy in radiotherapy-naive patients, and 15 × 2.0 Gy in previously irradiated patients. The concomitant chemotherapy agent will be capecitabine administered twice daily at a dose of 825 mg/m2 on radiotherapy days. The primary endpoint of the study is the R0 resection rate. Secondary endpoints are long-term oncological outcomes, radiological and pathological response, toxicity, postoperative complications, costs, and quality of life. Discussion This trial protocol describes the PelvEx II study. PelvEx II, designed as a multicentre, open-label, phase III, parallel-arms study, is the first randomized study to compare induction chemotherapy followed by neoadjuvant chemo(re)irradiation and surgery with neoadjuvant chemo(re)irradiation and surgery alone in patients with locally recurrent rectal cancer, with the aim of improving the number of R0 resections

Elevated UV-B radiation has no effect on litter quality and decomposition of two dune grassland species: evidence from a long-term field experiment.

From studies on living plant tissues it has been inferred that elevated UV-B radiation could negatively affect litter quality and subsequent decomposition. However, in general, the effects of UV-B radiation on litter chemistry and decomposition reported in the literature are variable and are often only marginally (if at all) significant. This might be due to the ecologically unrealistic conditions under which these experiments were performed. We investigated the effects of elevated UV-B radiation on litter quality and subsequent decomposition on initial litter chemistry and long-term (2 years) decomposition of freshly senesced Carex arenaria and Calamagrostis epigejos leaf litter under ecologically realistic conditions. This material was collected from a dune grassland that had received UV-B radiation treatments for three growing seasons. It was then used in a 2-year decomposition study using litter bags. We found no significant effects of elevated UV-R radiation on any of the litter chemistry parameters in either of the two species, nor did we find significant effects on litter decomposition. However, we did find significant differences in litter decomposition between the species. These differences were related to the interspecific differences in litter chemistry, particularly the litter phenolics concentration. These results show that litter quality and decomposition in dune grasslands are, also under ecologically realistic conditions, not affected by UV-B radiation. Instead, litter decomposition is determined by constitutive interspecific differences in litter chemistry. In conclusion, with our results added to the already existing literature, the preponderance of evidence now clearly suggests that elevated UV-B radiation has very little, if any, impact on litter quality and subsequent decomposition in real ecosystems. © 2004 Blackwell Publishing Ltd