Genetic diversity among farmer-preferred cassava landraces in Uganda

Understanding of genetic diversity among a breeding population is an important requirement for crop improvement as it allows for the selection of diverse parental combinations and formation of heterotic pools for genetic gain. This study was carried out to determine genetic diversity within and among 51 farmer-preferred cassava ( Manihot esculenta ) landraces and 15 elite accessions grown in Uganda. Twenty six simple sequence repeat (SSR) markers used for genetic diversity assessment in this study revealed a total of 154 alleles, of which 24% were unique alleles present only in landraces. The genetic diversity and observed herozygosity in landraces were slightly higher than in elite accessions. Elite accessions clustered with some of the landraces indicating that there were some alleles in common. However, 58.8% of the landraces fell into 3 different clusters independent of the elite accessions. Including these landraces with unique alleles in cassava breeding schemes will increase the chances of producing farmer preferred adapted elite cultivars. The study also revealed genetic differentiation among accessions from different regions providing an opportunity for establishment of heterotic pools within a breeding programme.La compr\ue9hension de la diversit\ue9 g\ue9n\ue9tique est une condition importante dans la s\ue9lection de diverses combinaisons parentales et la formation des groupes h\ue9terotiques d\u2019int\ue9r\ueat g\ue9n\ue9tique pour l\u2019am\ue9lioration des cultures. Cette \ue9tude \ue9tait conduite pour d\ue9terminer la diversit\ue9 g\ue9n\ue9tique parmi 51 vari\ue9t\ue9s locales de manioc ( Manihot esculenta ) pr\ue9f\ue9r\ue9es des fermiers et 15 accessions \ue9lites cultiv\ue9es en Ouganda. Vingt six marqueurs simples \ue0 sequence r\ue9p\ue9t\ue9e (SSR) utilis\ue9s pour l\u2019\ue9valuation de la diversit\ue9 g\ue9n\ue9tique ont r\ue9v\ue9l\ue9 un total de 154 all\ue8les, parmi lesquelles 24% \ue9taient des all\ue8les uniques pr\ue9sentes dans les races locales seulement. La diversit\ue9 g\ue9n\ue9tique et l\u2019h\ue9terozygosit\ue9 observ\ue9es dans les races locales \ue9taient l\ue9g\ue8rement sup\ue9rieures que dans les accessions \ue9lites. Celles-ci s\u2019\ue9taient regroup\ue9es avec quelques vari\ue9t\ue9s locales indiquant donc qu\u2019elles avaient quelques all\ue8les en commun. Par ailleurs, 58.8% des races locales ont form\ue9 trois diff\ue9rents groupes ind\ue9pendamment des accessions \ue9lites. Inclure ces races locales \ue0 all\ue8les uniques dans les syst\ue8mes d\u2019am\ue9lioration du manioc permettra d\u2019augmenter les chances de produire des cultivars \ue9lites pr\ue9f\ue9r\ue9s des fermiers. L\u2019\ue9tude montre aussi que la diff\ue9renciation g\ue9n\ue9tique trouv\ue9e parmi les accessions de diff\ue9rentes r\ue9gions est une opportunit\ue9 offerte pour l\u2019\ue9tablissement des groupes h\ue9terotiques dans le programme d\u2019am\ue9lioration

Effect of post-harvest handling practices, storage technologies and packaging material on post-harvest quality and antioxidant potential of Solanum Aethiopicum (Shum) leafy vegetable

Several studies have supported the use of vegetables as foods as well as medicinal plants. However, most especially for the leafy types of vegetables, their high moisture content gives them a short shelf life. On average Solanum aethiopicum (Shum) has a shelf life of one day, making it unable to keep fresh for a long time. The objective of this study was to determine the effect of post-harvest handling practices and storage technology on the post-harvest quality and antioxidant activity in S. aethiopicum, as well as determine the packaging material that could be able to maintain a high post-harvest quality during storage. The post-harvest handling and storage technologies were tested under three experimental conditions. Experiment one involved placing 2.0 kg of the harvested S. aethiopicum with roots intact (RI) and others with roots cut-off (RC) in a charcoal cooler (-CC), 21.0±1.00 °C, 95.67±3.01 %rh; in ambient storage (-AC), 23.8±2.86 °C, 69.38±6.72 % rh; and in cold room (-CR), 7.17±1.30 °C, 95.80±3.19 %rh. Experiment two involved storing 2.0 kg of S. aethiopicum in charcoal cooler with no water treatment (TT-) and in ambient storage while immersing in portable water for 2 to 3 seconds during the day (TT+). Experiment three involved packing 1.0 kg of S. aethiopicum sample of both RC and RI state to assess the effectiveness of the packaging materials (0.1 cm meshed perforated polyethylene (RC0.1), 0.5 cm meshed perforated polyethylene (RC0.5) and a 60 μm perforated polyethylene (RC60μm) in maintaining quality of the vegetables. The edible parts of the vegetable were tested for moisture content, percentage weight loss, chlorophyll content, polyphenol content and total antioxidant activity (as measures of post-harvest quality and shelf life) after every 24 hours. The antioxidant activity was determined by screening for free radical scavenging properties using diphenyl picryl hydrazyl (DPPH), Ferric reducing antioxidant power (FRAP) and ascorbic acid as standard. The results revealed that Shelf life was found to increase (from one day to four days) when the vegetable was intermittently immersed in portable water for 2 to 3 seconds after every one hour during the day for vegetables in ambient storage both with roots intact (RI(TT+)-AC and with roots cut-off RC(TT+)-AC). The samples stored in cold room and charcoal cooler showed slow and comparable reduction (percent) of weight for both intact and roots cut. The chlorophyll content decreased in all storage conditions, with ambient conditions showing the most rapid decrease. The total polyphenol fluctuated within relatively small limits for both with intact and roots cut-off when stored in cold room and charcoal cooler (6.25±0.05 to 9.35±0.05 mgGAE/gfw; respectively) within the four days of storage. Storage in ambient conditions indicated an increase in total polyphenol content from 9.35±0.05 to 14.77±0.12 mgGAE/gfw for that with roots intact (RI-AC) and to 13.65±0.06 mgGAE/gfw for roots cut-off (RC-AC). The increase in total polyphenol content in the ambient storage led to increased total antioxidant activity compared to that stored in cold room and charcoal cooler that remained almost constant. The 60 μm perforated polyethylene and 0.1 cm meshed perforated polyethylene retained more moisture (84.55±0.18 % and 85.20±0.03 %; respectively) and showed minimal percentage of weight loss (9.69±0.25 %) with the highest chlorophyll content (8.06±0.02 mg/g dwb) on day four when stored in the charcoal cooler, making it the best tested packaging material

Antioxidant potential of the farmer preferred selections of Solanum aethiopicum vegetable consumed in central Uganda

In addition to the rich micronutrient value, indigenous vegetables are regarded as possessing medicinal attributes. The Solanaceae family has over 1000 species worldwide, with a number of indigenous species originating in Africa. The most popular leafy vegetable in Uganda is the Solanum aethiopicum (Nakati). The objective of this study was to determine the selected phytochemical attributes, chlorophyll content, moisture content and total antioxidant activity of the farmer preferred selections within the landraces of Solanum aethiopicum leafy vegetable in Uganda. The antioxidant activity was achieved by screening the leaf extracts for their free radical scavenging properties using diphenyl picryl hydrazyl (DPPH) and ascorbic acid as standard. The ability of the extracts to scavenge DPPH radical was determined spectrophometrically at 517nm.The study showed that all the landraces had a high polyphenol and flavonoid content with SAS185/P/2015 containing the highest flavonoid content (3.16±0.06 mg QE/g fw). SAS1641/2015 showed the highest total polyphenol content of 7.79±0.27 mg GAE/g fw and also showed the highest vitamin C content. This contributed to the high total antioxidant activity of 2.79±0.01 and 5.43±0.02 mg AAE/g fw when using FRAP and DPPH methods respectively. SAS145/2015 presented the highest chlorophyll content of 19.69±0.01 mg/g dwb. All the landraces showed a high percentage moisture content that ranged from 82.66±0.35 to 84.21±0.48%. These results are of nutraceutical significance and hence confirm their usage as medicinal vegetables

Crop losses in Brazilian cassava varieties induced by the Cassava common mosaic virus

ABSTRACT Despite the widespread distribution of the Cassava common mosaic virus (CsCMV) in Brazil, little is known about the losses it causes in yield. The effect of CsCMV on different varieties was evaluated by reference to several agronomic traits. Four field trials were established in 2012/2013 and 2013/2014 using six varieties of cassava. Following mechanical inoculation with CsCMV, the presence of the virus was confirmed using the ELISA assay. The evaluated traits were plant height (PH), dry matter content (DMC), harvest index (HI), aerial part yield (APY), root yield (RoY), and starch yield (StY) in both inoculated and non-inoculated plants. Overall, the presence of the virus contributed little to the reduction in PH, HI, and DMC across the varieties, with PH being significantly reduced by 9.2 and 7.0 % in the BGM0212 and BRS Kiriris varieties, respectively. In contrast, APY, RoY, and StY were reduced by 30.2, 29.3, and 30.0 %, in the virus-infected plants respectively. While the BRS Kiriris and BRS Jari varieties suffered the highest reductions overall and were considered highly susceptible to CsCMV, none of the traits suffered reductions in the inoculated BRS Formosa plants. Although RoY and StY were reduced in inoculated plants of BRS Tapioqueira, crop yield for this variety was the highest. Thus, BRS Formosa and BRS Tapioqueira exhibited tolerance against CsCMV, which warrants further investigation

Linear discriminant analysis of structure within African eggplant \u2018Shum\u2019

African eggplant ( Solanum aethiopicum ) lags behind in terms of research attention; leading to, among other gaps, scantiness of information on intra-group genetic diversity. Hierarchical clustering was applied to reveal structure in a pioneer 20-entry set of S. aethiopicum Shum group accessions at Africa Solanaceae Research Network secretariat in Uganda, using 61 morpho-agronomic variables collected from a complete randomised design (CRD) with 12 plants per accession in screen-house. A MANOVA preceded linear discriminant analysis, to model each of 61 variables, as predicted by clusters and experiment to filter out non-significant traits. Four distinct clusters emerged, with a cophenetic relation coefficient of 0.87 (P<0.01). Canonical variates that best predicted the observed clusters include petiole length, sepal length (or seed color), fruit calyx length, seeds per fruit, leaf fresh weight (or leaves per plant), fruit fresh yield, seedling vigour, fruits per plant, harvest index and plant growth habit. Results suggest prospects for variety discrimination at various stages; seedling, vegetative and reproductive. The observed diversity will boost chances of effective selection for desired traits; while the canonical discriminant traits are potential morphological markers, within S. aethiopicum \u2018Shum\u2019 for a low-cost germplasm characterisation approach.L\u2019aubergine Africaine ( Solanum aethiopicum ) demeure en arri\ue8re en termes de travaux de recherches\ua0; conduisant \ue0, entre autres lacunes, manque d\u2019information sur la diversit\ue9\ua0g\ue9n\ue9tique intra-groupe. La classification hi\ue9rarchique \ue9tait utilis\ue9e pour r\ue9v\ue9ler la structure dans une s\ue9rie de 20 accessions de groupe Shum de S. aethiopicum au secr\ue9tariat du R\ue9seau Africain de Recherches sur les Solanaceae utilisant 61 variables morpho-agronomiques collect\ue9es d\u2019un design complet al\ue9atoire (CRD) avec 12 plantes par accession sous la serre. Une MANOVA a pr\ue9c\ue9d\ue9 l\u2019analyse discriminante lin\ue9aire, pour mod\ue9liser chacune des 61 variables, comme pr\ue9dit par les classes et l\u2019exp\ue9rimentation pour filtrer les traits non-significatifs. Quatre diff\ue9rentes classes ont \ue9t\ue9 identifi\ue9es, avec un coefficient de relation coph\ue9n\ue9tique de 0,87 (P<0,01). Les variables canoniques qui ont mieux pr\ue9dit les classes observ\ue9es comprenaient la longueur du p\ue9tiole, la longueur du s\ue9pale (ou la couleur des graines), la longueur du calice du fruit, le nombre de graines par fruit, le poids de feuilles fra\ueeches (ou feuilles par plante), le poids du fruit non sec, la vigueur des plantules, le nombre de fruits par plante, l\u2019indice de r\ue9colte et l\u2019habitude de croissance du plant. Les r\ue9sultats ont sugg\ue9r\ue9 une discrimination de la vari\ue9t\ue9 \ue0 divers stades, semis, v\ue9g\ue9tatif et reproductif. La diversit\ue9 observ\ue9e va augmenter les chances pour une s\ue9lection effective des traits d\ue9sir\ue9s\ua0; alors que les traits discriminants canoniques sont les marqueurs morphologiques, parmi le S. aethiopicum de type \u2018Shum\u2019 pour une approche de caract\ue9risation \ue0 moindre co\ufbt du germplasm

The effect of cassava mosaic disease on the genetic diversity of cassava in Uganda

Cassava (Manihot esculenta) is a tropical crop that is grown in Africa, Latin America and Southeast Asia. Cassava was introduced from Latin America into West and East Africa at two independent events. In Uganda a serious threat to cassava's survival is the cassava mosaic disease (CMD). Uganda has had two notable CMD epidemics since the introduction of cassava in the 1850s causing severe losses. SSR markers were used to study the effect of CMD on the genetic diversity in five agroecologies in Uganda with high and low incidence of CMD. Surprisingly, high gene diversity was detected. Most of the diversity was found within populations, while the diversity was very small among agroecological zones and the high and low CMD incidence areas. The high genetic diversity suggests a mechanism by which diversity is maintained by the active involvement of the Ugandan farmer in continuously testing and adopting new genotypes that will serve their diverse needs. However, in spite of the high genetic diversity we found a loss of rare alleles in areas with high CMD incidence. To study the effect of the introgression history on the gene pool the genetic differentiation between East and West Africa was also studied. Genetic similarities were found between the varieties in Uganda and Tanzania in East Africa and Ghana in West Africa. Thus, there is no evidence for a differentiation of the cassava gene pool into a western and an eastern genetic lineage. However, a possible difference in the genetic constitution of the introduced cassava into East and West Africa may have been diminished by germplasm movement