Utilisation du logiciel R pour l'identification de nouvelles cibles et régulateurs du protéasome

Utilisation du logiciel R pour l'identification de nouvelles cibles et régulateurs du protéasom

Interaction of yeast eIF4G with spliceosome components Implications in pre-mRNA processing events

International audienceAs evidenced from mammalian cells the eukaryotic translation initiation factor eIF4G has a putative role in nuclear RNA metabolism. Here we investigate whether this role is conserved in the yeast Saccharomyces cerevisiae. Using a combination of in vitro and in vivo methods, we show that, similar to mammalian eIF4G, yeast eIF4G homologues, Tif4631p and Tif4632p, are present both in the nucleus and the cytoplasm. We show that both eIF4G proteins interact efficiently in vitro with UsnRNP components of the splicing machinery. More specifically, Tif4631p and Tif4632p interact efficiently with U1 snRNA in vitro. In addition, Tif4631p and Tif4632p associate with protein components of the splicing machinery, namely Snu71p and Prp11p. To further delineate these interactions, we map the regions of Tif4631p and Tif4632p that are important for the interaction with Prp11p and Snu71p and we show that addition of these regions to splicing reactions in vitro has a dominant inhibitory effect. The observed interactions implicate eIF4G in aspects of pre-mRNA processing. In support of this hypothesis, deletion of one of the eIF4G isoforms results in accumulation of un-spliced precursors for a number of endogenous genes, in vivo. In conclusion these observations are suggestive of the involvement of yeast eIF4G in pre-mRNA metabolism

A modularity based spectral method for simultaneous community and anti-community detection

In a graph or complex network, communities and anti-communities are node sets whose modularity attains extremely large values, positive and negative, respectively. We consider the simultaneous detection of communities and anti-communities, by looking at spectral methods based on various matrix-based definitions of the modularity of a vertex set. Invariant subspaces associated to extreme eigenvalues of these matrices provide indications on the presence of both kinds of modular structure in the network. The localization of the relevant invariant subspaces can be estimated by looking at particular matrix angles based on Frobenius inner products

A functional network involved in the recycling of nucleocytoplasmic pre-60S factors

Eukaryotic pre-ribosomes go through cytoplasmic maturation steps before entering translation. The nucleocytoplasmic proteins participating in these late stages of maturation are reimported to the nucleus. In this study, we describe a functional network focused on Rei1/Ybr267w, a strictly cytoplasmic pre-60S factor indirectly involved in nuclear 27S pre-ribosomal RNA processing. In the absence of Rei1, the nuclear import of at least three other pre-60S factors is impaired. The accumulation in the cytoplasm of a small complex formed by the association of Arx1 with a novel factor, Alb1/Yjl122w, inhibits the release of the putative antiassociation factor Tif6 from the premature large ribosomal subunits and its recycling to the nucleus. We propose a model in which Rei1 is a key factor for the coordinated dissociation and recycling of the last pre-60S factors before newly synthesized large ribosomal subunits enter translation

Long Term Partial Discharge Behavior of Protrusion Defect in HVDC GIS

2022 IEEE. Personal use of this material is permitted. Permissíon from IEEE must be obtained for all other uses, in any current or future media, including reprinting/republishing this material for advertisíng or promotional purposes, creating new collective works, for resale or redistribution to servers or lists, or reuse of any copyrighted component of this work in other works.[EN] This article investigates the partial discharge (PD) behavior of protrusion defects in real-size high-voltage direct current gas insulated switchgear (HVDC GIS) for SF6 and SF6 alternative gases including fluoronitrile-CO2 mixture (10%) and fluoroketone-dry air mixture (6.6%). The evolution of PD apparent charge and PD repetition rate for all investigated gases is presented and discussed. The measurement results indicate that PD behavior changes as a function of time. The PD apparent charge increases and the PD repetition rate decreases with the increase of voltage application time. This evolution can be related to the change in protrusion tip radius due to electrochemical etching: radius of the protrusion's tip being enlarged. In addition, the pulse sequence analysis (PSA) plots of the PDs caused by this defect are presented. It is observed that the PSA plots change over time. Therefore, for the development of a robust PD monitoring and defect-recognition tool, as well as for the assessment of risks in the operation of HVDC GIS, it is crucial to take these changes into account.This work was supported in part by the Horizon 2020 Progress on Meshed HVDC Offshore Transmission Networks (PROMOTioN) Project under Grant 691714 and in part by the French Government through the frame of "Investissements d'avenir," under Grant ANE-ITE-002-01.Vu, C.; Toigo, C.; Jacquier, F.; Girodet, A.; Riechert, U.; Tuczek, MN.; Rodrigo Mor, A. (2022). Long Term Partial Discharge Behavior of Protrusion Defect in HVDC GIS. IEEE Transactions on Dielectrics and Electrical Insulation. 29(6):2294-2302. https://doi.org/10.1109/TDEI.2022.32067262294230229

Plum pudding random medium model of biological tissue toward remote microscopy from spectroscopic light scattering

Biological tissue has a complex structure and exhibits rich spectroscopic behavior. There is \emph{no} tissue model up to now able to account for the observed spectroscopy of tissue light scattering and its anisotropy. Here we present, \emph{for the first time}, a plum pudding random medium (PPRM) model for biological tissue which succinctly describes tissue as a superposition of distinctive scattering structures (plum) embedded inside a fractal continuous medium of background refractive index fluctuation (pudding). PPRM faithfully reproduces the wavelength dependence of tissue light scattering and attributes the "anomalous" trend in the anisotropy to the plum and the powerlaw dependence of the reduced scattering coefficient to the fractal scattering pudding. Most importantly, PPRM opens up a novel venue of quantifying the tissue architecture and microscopic structures on average from macroscopic probing of the bulk with scattered light alone without tissue excision. We demonstrate this potential by visualizing the fine microscopic structural alterations in breast tissue (adipose, glandular, fibrocystic, fibroadenoma, and ductal carcinoma) deduced from noncontact spectroscopic measurement

Helicon wave-generated plasmas for negative ion beams for fusion

In the next generation of fusion reactors, such as DEMO, neutral beam injectors (NBIs) of high energy (0.8-1 MeV) deuterium atom swith high wall-plug efficiency (>50%) will be required to reach burning plasma conditions and to provide a significant amount of current drive.The present NBI system for DEMO assumes that 50 MW is delivered to the plasma by 3 NBIs. In the Siphore NBI concept, negative deuterium ions are extracted from a long, thin ion source 3 m high and 15 cm wide, accelerated and subsequently photo-neutralized. This requires the development of a new generation of negative ion sources. At the Swiss Plasma Center, a novel radio frequency helicon plasma source, based on a resonant network antenna source delivering up to 10 kW at 13.56 MHz, has been developed and is presently under study on the Resonant Antenna Ion Device (RAID). RAID is a linear device (1.9 m total length, 0.4 m diameter) and is equipped with an extensive set of diagnostics for full plasma characterization. In this work, the principles of operation of resonant antennas as helicon sources areintroduced. Wepresent absolute spectroscopy, Langmuir probe, and interferometry measurements on helicon plasmas. We characterize the performanceof the source in terms of hydrogen/deuterium dissociation and negative ion production as a function of the input power. Furthermore, first results with the helicon birdcage antenna installed on the Cybele negative ion source at CEA-IRFM arepresented, as a first step towards the validation of the Siphoreconcept

60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes

During the highly conserved process of eukaryotic ribosome formation, RNA follows a maturation path with well-defined, successive intermediates that dynamically associate with many pre-ribosomal proteins. A comprehensive description of the assembly process is still lacking. To obtain data on the timing and order of association of the different pre-ribosomal factors, a strategy consists in the use of pre-ribsomal particles isolated from mutants that block ribosome formation at different steps. Immunoblots, inherently limited to only a few factors, have been applied to evaluate the accumulation or decrease of pre-ribosomal intermediates under mutant conditions. For a global protein-level description of different 60S ribosomal subunit maturation intermediates in yeast, we have adapted a method of in vivo isotopic labelling and mass spectrometry to study pre-60S complexes isolated from strains in which rRNA processing was affected by individual depletion of five factors: Ebp2, Nog1, Nsa2, Nog2 or Pop3. We obtained quantitative data for 45 distinct pre-60S proteins and detected coordinated changes for over 30 pre-60S factors in the analysed mutants. These results led to the characterisation of the composition of early, intermediate and late pre-ribosomal complexes, specific for crucial maturation steps during 60S assembly in eukaryotes

Recent Laborian of the Peyrazet cave-rock shelter (Creysse, Lot, France). New data for the end of Lateglacial in Quercy

Découverte en 1990, la grotte-abri de Peyrazet (Creysse, Lot, France) se situe dans le Haut-Quercy en bordure du causse de Martel, à quelques centaines de mètres du cours actuel de la Dordogne. Les fouilles menées depuis 2008 livrent une archéoséquence du Tardiglaciaire qui permet de combler certaines lacunes documentaires régionales et plus largement du Sud-Ouest de la France. Au Magdalénien supérieur succède un niveau ayant donné des indices d’un Azilien sensu lato stratigraphiquement séparé du Laborien, ensemble supérieur qui fait l’objet de cet article. Jusqu’alors ce technocomplexe de la fin du Pléistocène et des débuts de l’Holocène demeurait mal connu dans la région. En effet, seuls des travaux anciens menés dans deux gisements permettaient de noter sa présence en Quercy. La découverte d’un ensemble laborien récent (ou Épilaborien) à Peyrazet est l’occasion de conduire une étude collective des divers vestiges dans un cadre archéostratigraphique mieux maîtrisé. L’analyse géoarchéologique met en évidence l’action conjointe du ruissellement et de l’éboulisation comme principaux responsables de la mise en place des dépôts. Dans la partie S-O du site, un lithofaciès de remaniement indique une bioturbation importante en lien avec le creusement de terriers. Bien que leur origine ne soit pas liée aux activités humaines, les rongeurs, les oiseaux, les poissons et les mésomammifères (excepté le lièvre) apportent des données concernant l’environnement des chasseurs-cueilleurs. La grande faune est dominée par le cerf dont les carcasses pourraient avoir été introduites incomplètes sur le site puis traitées pour en extraire la viande et la moelle. Nous avons bénéficié d’une analyse fonctionnelle croisée à l’étude typo-technologique des vestiges lithiques composés pour l’essentiel de silex locaux et régionaux. Ce double regard a permis de mettre en évidence une diversité d’activités mise en œuvre dans la cavité. Une pièce d’ocre rouge, quelques vestiges d’industrie osseuse et des éléments de parure participent également à la description d’une large gamme de tâches effectuées lors d’un séjour prolongé ou de plusieurs occupations successives. La comparaison des pointes de chasse microlithiques avec d’autres gisements sur une vaste échelle géographique conduit à discuter l’attribution de cet ensemble supérieur à différentes phases du Laborien. L’hypothèse d’un Laborien récent (ou Épilaborien) conduit à réfléchir à une perduration de morphotypes ancestraux parallèlement à de nouveaux types d’armatures, observation déjà réalisée notamment à La Borie del Rey dans le Haut-Agenais mais qui demande encore des précisions et de nouvelles découvertes.Discovered in 1990, Peyrazet cave-rock shelter (Creysse, Lot) lies in the Haut-Quercy region at the limits of the Martel limestone plateau, several hundred meters from the current Dordogne River valley. Excavations begun in 2008 produced a Late Glacial archaeo-sequence that sheds new light on several still poorly understood aspects of the archeological record in both the Haut-Quercy region and southwestern France in general. The level overlying the Late Magdalenian occupation produced limited evidence for the Azilian and is stratigraphically separated from the Laborian. This latter techno-complex, dated to the end of the Pleistocene and early Holocene, remains poorly documented in the region, having only been previously identified from two sites in the Quercy. The discovery of a recent Laborian (Epilaborian) occupation at Peyrazet presented the ideal occasion for a collaborative study of the diverse archaeological material recovered from this well-understood archaeo-stratigraphic context. A geoarchaeological analysis produced evidence for both surface runoff and the accumulation of coarse deposits (éboulis) as the principal site formation processes. In the southwest area of the site, a reworked lithofacies demonstrates substantial bioturbation in connection with animal burrowing. Although the presence of rodent, bird, fish, and medium-sized mammals (except hare) cannot be definitively connected to human activity, they nevertheless provide important information concerning the environments exploited by hunter-gatherer groups. Larger species are dominated by red deer whose carcasses were partially processed before being introduced to the site, where meat was subsequently removed and marrow consumed. A functional analysis combined with a typo-technological study of the primarily locally- and regionally-procured lithic material revealed evidence for diverse activities having taken place on-site. An ochre fragment, several bone tools and ornaments equally indicate a large variety of tasks to have been carried out during a single, long occupation or several successive visits. A typo-technological comparison of hunting weaponry (microliths) from sites across a substantial area suggests the assemblage to represent either a Laborian/Epilaborian mix or a unique Epilaborian occupation. This latter case would indicate the persistence of older morphotypes alongside the development of new tools forms, a situation already identified at Borie del Rey in the Haut-Agenais but which requires more detailed study supported by new discoveries