Exploratory Analysis of Functional Data via Clustering and Optimal Segmentation

We propose in this paper an exploratory analysis algorithm for functional data. The method partitions a set of functions into $K$ clusters and represents each cluster by a simple prototype (e.g., piecewise constant). The total number of segments in the prototypes, $P$, is chosen by the user and optimally distributed among the clusters via two dynamic programming algorithms. The practical relevance of the method is shown on two real world datasets

Bypassing rRNA methylation by RsmA/Dim1during ribosome maturation in the hyperthermophilic archaeon Nanoarchaeum equitans

In all free-living organisms a late-stage checkpoint in the biogenesis of the small ribosomal subunit involves rRNA modification by an RsmA/Dim1 methyltransferase. The hyperthermophilic archaeon Nanoarchaeum equitans, whose existence is confined to the surface of a second archaeon, Ignic-occus hospitalis, lacks an RsmA/Dim1 homolog. We demonstrate here that the I. hospitalis host possesses the homolog Igni_1059, which dimethylates the N-6-positions of two invariant adenosines within helix 45 of 16S rRNA in a manner identical to other RsmA/Dim1 enzymes. However, Igni_1059 is not transferred from I. hospitalis to N. equitans across their fused cell membrane structures and the corresponding nucleotides in N. equitans 16S rRNA remain unmethylated. An alternative mechanism for ribosomal subunit maturation in N. equitans is suggested by sRNA interactions that span the redundant RsmA/Dim1 site to introduce 2'-O-ribose methylations within helices 44 and 45 of the rRNA

High Gain Antenna System Deployment Mechanism Integration, Characterization, and Lessons Learned

The integration and deployment testing of the High Gain Antenna System (HGAS) for the Global Precipitation Measurement mission is summarized. The HGAS deployment mechanism is described. The gravity negation system configuration and its influence on vertical, ground-based deployment tests are presented with test data and model predictions. A focus is made on the late discovery and resolution of a potentially mission-degrading deployment interference condition. The interaction of the flight deployment mechanism, gravity-negation mechanism, and use of dynamic modeling is described and lessons learned presente

High Gain Antenna System Deployment Mechanism Integration, Characterization, and Lessons Learned

The integration and deployment testing of the High Gain Antenna System for the Global Precipitation Measurement mission is summarized. The HGAS deployment mechanism is described. The gravity negation system configuration and its influence on vertical, ground-based, deployment tests are presented with test data and model predictions. A focus is made on the late discovery and resolution of a potentially mission degrading deployment interference condition. The interaction of the flight deployment mechanism, gravity negation mechanism, and use of dynamic modeling is described and lessons learned presented

The Coniacian–Santonian sedimentary record in southern Tanzania (Ruvuma Basin, East Africa): Planktonic foraminiferal evolutionary, geochemical and palaeoceanographic patterns

AbstractA 101 m thick stratigraphically complete late Coniacian–early Santonian (ca 89 to 83 Ma) sedimentary sequence drilled in Tanzania (Tanzania Drilling Project Site 39) allows, for the first time, examination of the planktonic foraminiferal biostratigraphy and evolution, the depositional history, and geochemical patterns of the subtropical–tropical Indian Ocean region. The sedimentary succession corresponds to an outer shelf to upper slope setting and is dominated by calcareous clayey siltstones and mudstones. The occurrences of Tethyan marker species enable application of the tropical biozonation including identification of the Dicarinella concavata and Dicarinella asymetrica Zones. In addition, Tanzania Drilling Project Site 39 is proposed as reference section for the Coniacian/Santonian boundary in the Indian Ocean with the boundary placed at the lowest occurrence of Globotruncana linneiana in agreement with the Global Stratotype Section and Point (Spain). The record at Tanzania Drilling Project Site 39 provides a unique opportunity to document the planktonic foraminiferal evolution in a subtropical marginal sea environment during a key period in their evolutionary history characterized by a major radiation among the deep‐dwelling taxa. Combined documentation of lithological and geochemical changes (%CaCO3, %Corg, δ13Ccarb and δ18Ocarb) reveals a setting influenced by continental‐derived nutrients in the Dicarinella concavata Zone (Lindi Formation) with a change to higher carbonate production and reduced surface water primary productivity in the overlying Dicarinella asymetrica Zone (Nangurukuru Formation). Planktonic foraminiferal assemblage changes mirror the depositional and geochemical trends and indicate a progressive shift from a more eutrophic to a more oligotrophic regime through time. At the local scale, this palaeoceanographic scenario is consistent with the deepening of coastal Tanzania in response to the Late Cretaceous marine transgression registered in south‐east Tanzania. Because the tectonic evolution and sea‐level rise along the East Africa continental margin is superimposed on the Coniacian–Campanian global long‐term sea‐level high, this study hypothesizes that the epicontinental invasion of blue waters may have favoured radiation among deep‐dwelling taxa

Ewald Hering's (1899) On the Limits of Visual Acuity: A Translation and Commentary

Towards the end of the 19th Century, Hering and Helmholtz were arguing about the fineness of visual acuity. In a talk given in 1899, Hering finally established beyond reasonable doubt that humans can see spatial displacements smaller than the diameter of a foveal cone receptor, an ability we nowadays call hyperacuity' and still the topic of active research. Hering suggested that this ability is made manifest by averaging across the range of locations stimulated during miniature eye movements. However, this idea was made most clear only in a footnote to this (not well known) publication of his talk and so was missed by many subsequent workers. Accordingly, particularly towards the end of the 20th Century, Hering has commonly been mis-cited as having proposed in this paper that averaging occurs purely along the lengths of the edges in the image. Here, we present in translation what Hering actually said and why. In Supplementary Material, we additionally translate accounts of some background experiments by Volkmann (1863) that were cited by Hering

Late Cretaceous Paleoceanographic Evolution and the Onset of Cooling in the Santonian at Southern High Latitudes (IODP Site U1513, SE Indian Ocean)

The latest Cenomanian to Santonian sedimentary record recovered at IODP Expedition 369 Site U1513 in the Mentelle Basin (SE Indian Ocean, paleolatitude 60°S at 85 Ma) is studied to interpret the paleoceanographic evolution in the Southern Hemisphere. The planktonic foraminiferal assemblage changes, the depth ecology preferences of different species, and the surface and seafloor temperature inferred from the stable isotopic values measured on foraminiferal tests provide meaningful information to the understanding of the Late Cretaceous climate. The hothouse climate during the Turonian-Santonian, characterized by weak latitudinal temperature gradients and high atmospheric CO2 concentrations, is followed by a progressive cooling during the Campanian. At Site U1513 the beginning of this climatic transition is nicely recorded within the Santonian, as indicated by an ∼1‰ increase in δ18O values of planktonic foraminifera suggesting a decline in surface water paleotemperatures of 4°C. The onset of cooling is mirrored by changes in the planktonic foraminiferal assemblages including extinctions among surface and deep dwellers, appearances and diversification of newly evolving taxa, and changes from predominantly epifaunal oxic to infaunal dysoxic/ suboxic taxa among co-occurring benthic foraminifera. Overall, the data presented here document an interval in the Santonian during which the rate of southern high latitude cooling increased. Both surface and bottom waters were affected, although the cooling signal is more evident in the data for surface waters. This pattern of cooling ascribes the deterioration of the Late Cretaceous climate to decreased CO2 in the atmosphere and changes in the oceanic circulation correlated with enhanced meridional circulation

Neutrophile-to-Lymphocyte Ratio (NLR) Identifies Patients with Coronavirus Infectious Disease 2019 (COVID-19) at High Risk for Deterioration and Mortality-A Retrospective, Monocentric Cohort Study

Among people infected with SARS-CoV-2, the determination of clinical features associated with poor outcome is essential to identify those at high risk of deterioration. Here, we aimed to investigate clinical phenotypes of patients hospitalized due to COVID-19 and to examine the predictive value of the neutrophil-to-lymphocyte ratio (NLR) in a representative patient collective of the Swiss population. We conducted a retrospective monocentriccohort study with patients hospitalized due to COVID-19 between 27 February and 31 December 2020. Data were analyzed descriptively, using the binary logistic regression model, proportional odds logistic regression model, competing risk analysis, and summary measure analysis. A total of 454 patients were included in our study. Dyspnea, elevated respiratory rate, low oxygen saturation at baseline, age, and presence of multiple comorbidities were associated with a more severe course of the disease. A high NLR at baseline was significantly associated with disease severity, unfavorable outcome, and mortality. In non-survivors, NLR further increased during hospital stay, whereas in survivors, NLR decreased. In conclusion, our data emphasize the importance of accurate history taking and clinical examination upon admission and confirm the role of baseline NLR as a surrogate marker for increased disease severity, unfavorable outcome, and mortality in patients hospitalized due to infection with SARS-CoV-2

The AIFELL Score as a Predictor of Coronavirus Disease 2019 (COVID-19) Severity and Progression in Hospitalized Patients

Since the beginning of the COVID-19 pandemic, SARS-CoV-2 has caused a global burden for health care systems due to high morbidity and mortality rates, leading to caseloads that episodically surpass hospital resources. Due to different disease manifestations, the triage of patients at high risk for a poor outcome continues to be a major challenge for clinicians. The AIFELL score was developed as a simple decision instrument for emergency rooms to distinguish COVID-19 patients in severe disease stages from less severe COVID-19 and non-COVID-19 cases. In the present study, we aimed to evaluate the AIFELL score as a prediction tool for clinical deterioration and disease severity in hospitalized COVID-19 patients. During the second wave of the COVID-19 pandemic in Switzerland, we analyzed consecutively hospitalized patients at the Triemli Hospital Zurich from the end of November 2020 until mid-February 2021. Statistical analyses were performed for group comparisons and to evaluate significance. AIFELL scores of patients developing severe COVID-19 stages IIb and III during hospitalization were significantly higher upon admission compared to those patients not surpassing stages I and IIa. Group comparisons indicated significantly different AIFELL scores between each stage. In conclusion, the AIFELL score at admission was useful to predict the disease severity and progression in hospitalized COVID-19 patients