BioDeepTime : a database of biodiversity time series for modern and fossil assemblages

We thank the Paleosynthesis Project and the Volkswagen Stiftung for funding that supported this project (Az 96 796). M.C.R. acknowledges the German Research Foundation (DFG) for funding through the Cluster of Excellence ‘The Ocean Floor – Earth's Uncharted Interface’ (EXC 2077, grant no. 390741603). E.E.S. acknowledges funding from Leverhulme Trust grant RPG-201170, the Leverhulme Prize and the National Science Research Council grant NE/V011405/1. Q.J.L. and L.N. acknowledge support from the Youth Innovation Promotion Association (2019310) and the Chinese Academy of Sciences (CAS-WX2021SF-0205). A.M.P. acknowledges funding from the Leverhulme Trust through research grant RPG-2019-402. M.D. acknowledges funding from Leverhulme Trust through the Leverhulme Centre for Anthropocene Biodiversity (RC-2018-021) and a research grant (RPG-2019-402), and the European Union (ERC coralINT, 101044975). L. H. L. acknowledges funding from the European Research Council (macroevolution.abc ERC grant no. 724324). K.H.P acknowledges funding from the National Science Foundation Graduate Research Fellowship Program (DGE-2139841). H.H.M.H. acknowledges support from Peter Buck Postdoc Fellowship, Smithsonian Institution. A.T. acknowledges funding from the Slovak Research and Development Agency (APVV 22-0523) and the Slovak Scientific Grant Agency (VEGA 02/0106/23).Motivation We have little understanding of how communities respond to varying magnitudes and rates of environmental perturbations across temporal scales. BioDeepTime harmonizes assemblage time series of presence and abundance data to help facilitate investigations of community dynamics across timescales and the response of communities to natural and anthropogenic stressors. BioDeepTime includes time series of terrestrial and aquatic assemblages of varying spatial and temporal grain and extent from the present-day to millions of years ago. Main Types of Variables Included BioDeepTime currently contains 7,437,847 taxon records from 10,062 assemblage time series, each with a minimum of 10 time steps. Age constraints, sampling method, environment and taxonomic scope are provided for each time series. Spatial Location and Grain The database includes 8752 unique sampling locations from freshwater, marine and terrestrial ecosystems. Spatial grain represented by individual samples varies from quadrats on the order of several cm2 to grid cells of ~100 km2. Time Period and Grain BioDeepTime in aggregate currently spans the last 451?million years, with the 10,062 modern and fossil assemblage time series ranging in extent from years to millions of years. The median extent of modern time series is 18.7?years and for fossil series is 54,872?years. Temporal grain, the time encompassed by individual samples, ranges from days to tens of thousands of years. Major Taxa and Level of Measurement The database contains information on 28,777 unique taxa with 4,769,789 records at the species level and another 271,218 records known to the genus level, including time series of benthic and planktonic foraminifera, coccolithophores, diatoms, ostracods, plants (pollen), radiolarians and other invertebrates and vertebrates. There are to date 7012 modern and 3050 fossil time series in BioDeepTime. Software Format SQLite, Comma-separated values.Publisher PDFPeer reviewe

MARBEN database

MARBEN database is a compilation of time series with marine (both shelf and deep-sea) benthic fossil assemblages (with foraminifers or ostracods) with.abundance or presence-absence data collected in the Cenozoic stratigraphic successions (primarily from sediment cores). Each time series is associated with an age model

Testing the deep‐sea glacial disturbance hypothesis as a cause of low, present‐day Norwegian Sea diversity and resulting steep latitudinal diversity gradient, using fossil records

Aims Within the intensively‐studied, well‐documented latitudinal diversity gradient, the deep‐sea biodiversity of the present‐day Norwegian Sea stands out with its notably low diversity, constituting a steep latitudinal diversity gradient in the North Atlantic. The reason behind this has long been a topic of debate and speculation. Most prominently, it is explained by the deep‐sea glacial disturbance hypothesis, which states that harsh environmental glacial conditions negatively impacted Norwegian Sea diversities, which have not yet fully recovered. Our aim is to empirically test this hypothesis. Specific research questions are: (1) Has deep‐sea biodiversity been lower during glacials than during interglacials? ( 2) Was there any faunal shift at the Mid‐Brunhes Event (MBE) when the mode of glacial–interglacial climatic change was altered? Location Norwegian Sea, deep sea (1819–2800 m), coring sites MD992277, PS1243, and M23352. Time period 620.7–1.4 ka (Middle Pleistocene–Late Holocene). Taxa studied Ostracoda (Crustacea). Methods We empirically test the deep‐sea glacial disturbance hypothesis by investigating whether diversity in glacial periods is consistently lower than diversity in interglacial periods. Additionally, we apply comparative analyses to determine a potential faunal shift at the MBE, a Pleistocene event describing a fundamental shift in global climate. Results The deep Norwegian Sea diversity was not lower during glacial periods compared to interglacial periods. Holocene diversity was exceedingly lower than that of the last glacial period. Faunal composition changed substantially between pre‐ and post‐MBE. Main conclusions These results reject the glacial disturbance hypothesis, since the low glacial diversity is the important precondition here. The present‐day‐style deep Norwegian Sea ecosystem was established by the MBE, more specifically by MBE‐induced changes in global climate, which has led to more dynamic post‐MBE conditions. In a broader context, this implies that the MBE has played an important role in the establishment of the modern polar deep‐sea ecosystem and biodiversity in general

Testing the deep‐sea glacial disturbance hypothesis as a cause of low, present‐day Norwegian Sea diversity and resulting steep latitudinal diversity gradient, using fossil records

Aim Within the intensively-studied, well-documented latitudinal diversity gradient, the deep-sea biodiversity of the present-day Norwegian Sea stands out with its notably low diversity, constituting a steep latitudinal diversity gradient in the North Atlantic. The reason behind this has long been a topic of debate and speculation. Most prominently, it is explained by the deep-sea glacial disturbance hypothesis, which states that harsh environmental glacial conditions negatively impacted Norwegian Sea diversities, which have not yet fully recovered. Our aim is to empirically test this hypothesis. Specific research questions are: (1) Has deep-sea biodiversity been lower during glacials than during interglacials? (2) Was there any faunal shift at the Mid-Brunhes Event (MBE) when the mode of glacial–interglacial climatic change was altered? Location Norwegian Sea, deep sea (1819–2800 m), coring sites MD992277, PS1243, and M23352. Time period 620.7–1.4 ka (Middle Pleistocene–Late Holocene). Taxa studied Ostracoda (Crustacea). Methods We empirically test the deep-sea glacial disturbance hypothesis by investigating whether diversity in glacial periods is consistently lower than diversity in interglacial periods. Additionally, we apply comparative analyses to determine a potential faunal shift at the MBE, a Pleistocene event describing a fundamental shift in global climate. Results The deep Norwegian Sea diversity was not lower during glacial periods compared to interglacial periods. Holocene diversity was exceedingly lower than that of the last glacial period. Faunal composition changed substantially between pre- and post-MBE. Main conclusions These results reject the glacial disturbance hypothesis, since the low glacial diversity is the important precondition here. The present-day-style deep Norwegian Sea ecosystem was established by the MBE, more specifically by MBE-induced changes in global climate, which has led to more dynamic post-MBE conditions. In a broader context, this implies that the MBE has played an important role in the establishment of the modern polar deep-sea ecosystem and biodiversity in general

Testing the deep‐sea glacial disturbance hypothesis as a cause of low, present‐day Norwegian Sea diversity and resulting steep latitudinal diversity gradient, using fossil records

AbstractAimWithin the intensively‐studied, well‐documented latitudinal diversity gradient, the deep‐sea biodiversity of the present‐day Norwegian Sea stands out with its notably low diversity, constituting a steep latitudinal diversity gradient in the North Atlantic. The reason behind this has long been a topic of debate and speculation. Most prominently, it is explained by the deep‐sea glacial disturbance hypothesis, which states that harsh environmental glacial conditions negatively impacted Norwegian Sea diversities, which have not yet fully recovered. Our aim is to empirically test this hypothesis. Specific research questions are: (1) Has deep‐sea biodiversity been lower during glacials than during interglacials? (2) Was there any faunal shift at the Mid‐Brunhes Event (MBE) when the mode of glacial–interglacial climatic change was altered?LocationNorwegian Sea, deep sea (1819–2800 m), coring sites MD992277, PS1243, and M23352.Time period620.7–1.4 ka (Middle Pleistocene–Late Holocene).Taxa studiedOstracoda (Crustacea).MethodsWe empirically test the deep‐sea glacial disturbance hypothesis by investigating whether diversity in glacial periods is consistently lower than diversity in interglacial periods. Additionally, we apply comparative analyses to determine a potential faunal shift at the MBE, a Pleistocene event describing a fundamental shift in global climate.ResultsThe deep Norwegian Sea diversity was not lower during glacial periods compared to interglacial periods. Holocene diversity was exceedingly lower than that of the last glacial period. Faunal composition changed substantially between pre‐ and post‐MBE.Main conclusionsThese results reject the glacial disturbance hypothesis, since the low glacial diversity is the important precondition here. The present‐day‐style deep Norwegian Sea ecosystem was established by the MBE, more specifically by MBE‐induced changes in global climate, which has led to more dynamic post‐MBE conditions. In a broader context, this implies that the MBE has played an important role in the establishment of the modern polar deep‐sea ecosystem and biodiversity in general.</jats:sec

Ostracod response to monsoon and OMZ variability over the past 1.2 Myr

We present the first continuous middle through late Pleistocene record of fossil ostracods from the Maldives in the northern Indian Ocean, derived from sediment cores taken at Site U1467 by Expedition 359 of the International Ocean Discovery Program (IODP). Site U1467 lies at 487 m water depth in the Inner Sea of the Maldives archipelago, an ideal place for studying the effects of the South Asian Monsoon (SAM) system on primary productivity, intermediate depth ocean circulation, and the regional oxygen minimum zone (OMZ). The Inner Sea acts as a natural sediment trap that has undergone continuous sedimentation for millions of years with minor terrestrial influence. Our record spans from Marine Isotope Stage (MIS) 35 to the present, covering the mid Pleistocene transition (1.2-0.6 Ma) and the Mid-Brunhes Event (MBE, at similar to 480 ka) the time when ice age cycles transitioned from occurring every 40,000 years to 100,000 years. The ostracod data is interpreted alongside the existing datasets from the same site of sedimentological (grain-size) and XRF-elemental analyses, and new organic biomarker data also from Site U1467. These datasets support the paleoenvironmental interpretation of the ostracod assemblages. Ostracods are abundant and diverse, displaying a prominent change in faunal composition at the MBE related to the increase in the amplitude of glacial-interglacial cycles, which deeply affected the monsoon system and thereby the past oceanographic conditions of the Maldives Inner Sea. Furthermore, ostracods exhibit distinctly different assemblages across glacial-interglacial cycles, particularly after the MBE, and these changes convincingly correspond to variability of the OMZ. Glacial periods are characterized by ostracod indicators of well-oxygenated bottom water due to the intensification of the winter monsoon and the contraction of the OMZ. Abundant psychrospheric ostracods during glacials suggests that a southern sourced water mass, such as Antarctic Intermediate Water (AAIW) and/or Subantarctic Mode water, bathed the Maldives Inner Sea during glacial periods. In contrast, interglacial stages are characterized by ostracod species and biomarker data that indicate low-oxygen conditions and sluggish bottom water circulation pointing to an expansion of the regional OMZ due to the strengthening of the summer monsoon. Our results highlight the sensitivity of ostracods to oceanographic and climate variability.info:eu-repo/semantics/publishedVersio

Ostracod response to monsoon and OMZ variability over the past 1.2 Myr

We present the first continuous middle through late Pleistocene record of fossil ostracods from the Maldives in the northern Indian Ocean, derived from sediment cores taken at Site U1467 by Expedition 359 of the International Ocean Discovery Program (IODP). Site U1467 lies at 487 m water depth in the Inner Sea of the Maldives archipelago, an ideal place for studying the effects of the South Asian Monsoon (SAM) system on primary productivity, intermediate depth ocean circulation, and the regional oxygen minimum zone (OMZ). The Inner Sea acts as a natural sediment trap that has undergone continuous sedimentation for millions of years with minor terrestrial influence. Our record spans from Marine Isotope Stage (MIS) 35 to the present, covering the mid-Pleistocene transition (1.2–0.6 Ma) and the Mid-Brunhes Event (MBE, at ~480 ka) the time when ice age cycles transitioned from occurring every 40,000 years to 100,000 years. The ostracod data is interpreted alongside the existing datasets from the same site of sedimentological (grain-size) and XRF-elemental analyses, and new organic biomarker data also from Site U1467. These datasets support the paleoenvironmental interpretation of the ostracod assemblages. Ostracods are abundant and diverse, displaying a prominent change in faunal composition at the MBE related to the increase in the amplitude of glacial-interglacial cycles, which deeply affected the monsoon system and thereby the past oceanographic conditions of the Maldives Inner Sea. Furthermore, ostracods exhibit distinctly different assemblages across glacial-interglacial cycles, particularly after the MBE, and these changes convincingly correspond to variability of the OMZ. Glacial periods are characterized by ostracod indicators of well‑oxygenated bottom water due to the intensification of the winter monsoon and the contraction of the OMZ. Abundant psychrospheric ostracods during glacials suggests that a southern sourced water mass, such as Antarctic Intermediate Water (AAIW) and/or Subantarctic Mode water, bathed the Maldives Inner Sea during glacial periods. In contrast, interglacial stages are characterized by ostracod species and biomarker data that indicate low-oxygen conditions and sluggish bottom water circulation pointing to an expansion of the regional OMZ due to the strengthening of the summer monsoon. Our results highlight the sensitivity of ostracods to oceanographic and climate variability.</p

BioDeepTime:a database of biodiversity time series for modern and fossil assemblages

Motivation We have little understanding of how communities respond to varying magnitudes and rates of environmental perturbations across temporal scales. BioDeepTime harmonizes assemblage time series of presence and abundance data to help facilitate investigations of community dynamics across timescales and the response of communities to natural and anthropogenic stressors. BioDeepTime includes time series of terrestrial and aquatic assemblages of varying spatial and temporal grain and extent from the present-day to millions of years ago. Main Types of Variables Included BioDeepTime currently contains 7,437,847 taxon records from 10,062 assemblage time series, each with a minimum of 10 time steps. Age constraints, sampling method, environment and taxonomic scope are provided for each time series. Spatial Location and Grain The database includes 8752 unique sampling locations from freshwater, marine and terrestrial ecosystems. Spatial grain represented by individual samples varies from quadrats on the order of several cm2 to grid cells of ~100 km2. Time Period and Grain BioDeepTime in aggregate currently spans the last 451 million years, with the 10,062 modern and fossil assemblage time series ranging in extent from years to millions of years. The median extent of modern time series is 18.7 years and for fossil series is 54,872 years. Temporal grain, the time encompassed by individual samples, ranges from days to tens of thousands of years. Major Taxa and Level of Measurement The database contains information on 28,777 unique taxa with 4,769,789 records at the species level and another 271,218 records known to the genus level, including time series of benthic and planktonic foraminifera, coccolithophores, diatoms, ostracods, plants (pollen), radiolarians and other invertebrates and vertebrates. There are to date 7012 modern and 3050 fossil time series in BioDeepTime. Software Format SQLite, Comma-separated values