The Design and Implementation of an AFP/AFS Protocol Translator

This paper gives an overview of the design and implementation of the AFP/AFS protocol translator currently in use at the University of Michigan. The protocol translator is an implementation of the AppleTalk protocol suite on BSD UNIX and BSD UNIX derivatives. The translator exploits currently existing UNIX TCP/IP mechanisms (such as sockets), and provides a programming interface to the session and transport layers of AppleTalk. The translator is designed to export AFS and UNIX local file system components as AFP volumes. This ability enables users to access files in the large AFS file system using the native Macintosh interface. Additionally, the translator software on the Macintosh provides Kerberos authentication to the AFS client (AFS Kerberos), reauthentication for expired tokens (AFS Log), and the advantages of the rich access control mechanisms provided by AFS.http://deepblue.lib.umich.edu/bitstream/2027.42/107947/1/citi-tr-93-5.pd

OpenIaC: open infrastructure as code - the network is my computer

Modern information systems are built fron a complex composition of networks, infrastructure, devices, services, and applications, interconnected by data flows that are often private and financially sensitive. The 5G networks, which can create hyperlocalized services, have highlighted many of the deficiencies of current practices in use today to create and operate information systems. Emerging cloud computing techniques, such as Infrastructure-as-Code (IaC) and elastic computing, offer a path for a future re-imagining of how we create, deploy, secure, operate, and retire information systems. In this paper, we articulate the position that a comprehensive new approach is needed for all OSI layers from layer 2 up to applications that are built on underlying principles that include reproducibility, continuous integration/continuous delivery, auditability, and versioning. There are obvious needs to redesign and optimize the protocols from the network layer to the application layer. Our vision seeks to augment existing Cloud Computing and Networking solutions with support for multiple cloud infrastructures and seamless integration of cloud-based microservices. To address these issues, we propose an approach named Open Infrastructure as Code (OpenIaC), which is an attempt to provide a common open forum to integrate and build on advances in cloud computing and blockchain to address the needs of modern information architectures. The main mission of our OpenIaC approach is to provide services based on the principles of Zero Trust Architecture (ZTA) among the federation of connected resources based on Decentralized Identity (DID). Our objectives include the creation of an open-source hub with fine-grained access control for an open and connected infrastructure of shared resources (sensing, storage, computing, 3D printing, etc.) managed by blockchains and federations. Our proposed approach has the potential to provide a path for developing new platforms, business models, and a modernized information ecosystem necessary for 5G networks.publishedVersio

Origin of the World\u27s Collection of the Tropical Forage Legume Chamaecrista Rotundifolia

Round leaf cassia (Chamaecrista rotundifolia) cv. Wynn is an important legume in light textured soils in sub-tropical Queensland and forage evaluators in other regions of the tropics frequently wish to include in their evaluation trials this cultivar plus other accessions which represent the variation in the species. Provenance data of a world collection of 130 accessions of round leaf cassia were examined and a core set of 26 accessions selected

Building Infrastructure for Preservation and Publication of Earthquake Engineering Research Data

The objective of this paper is to showcase the progress of the earthquake engineering community during a decade-long effort supported by the National Science Foundation in the George E. Brown Jr., Network for Earthquake Engineering Simulation (NEES). During the four years that NEES network operations have been headquartered at Purdue University, the NEEScomm management team has facilitated an unprecedented cultural change in the ways research is performed in earthquake engineering. NEES has not only played a major role in advancing the cyberinfrastructure required for transformative engineering research, but NEES research outcomes are making an impact by contributing to safer structures throughout the USA and abroad. This paper reflects on some of the developments and initiatives that helped instil change in the ways that the earthquake engineering and tsunami community share and reuse data and collaborate in general

Role of risk stratification by SPECT, PET, and hybrid imaging in guiding management of stable patients with ischaemic heart disease: expert panel of the EANM cardiovascular committee and EACVI

Risk stratification has become increasingly important in the management of patients with suspected or known ischaemic heart disease (IHD). Recent guidelines recommend that these patients have their care driven by risk assessment. The purpose of this position statement is to summarize current evidence on the value of cardiac single-photon emission computed tomography, positron emission tomography, and hybrid imaging in risk stratifying asymptomatic or symptomatic patients with suspected IHD, patients with stable disease, patients after coronary revascularization, heart failure patients, and specific patient population. In addition, this position statement evaluates the impact of imaging results on clinical decision-making and thereby its role in patient management. The document represents the opinion of the European Association of Nuclear Medicine (EANM) Cardiovascular Committee and of the European Association of Cardiovascular Imaging (EACVI) and intends to stimulate future research in this fiel

Mapping language function with task-based vs. resting-state functional MRI

BACKGROUND: Use of functional MRI (fMRI) in pre-surgical planning is a non-invasive method for pre-operative functional mapping for patients with brain tumors, especially tumors located near eloquent cortex. Currently, this practice predominantly involves task-based fMRI (T-fMRI). Resting state fMRI (RS-fMRI) offers an alternative with several methodological advantages. Here, we compare group-level analyses of RS-fMRI vs. T-fMRI as methods for language localization. PURPOSE: To contrast RS-fMRI vs. T-fMRI as techniques for localization of language function. METHODS: We analyzed data obtained in 35 patients who had both T-fMRI and RS-fMRI scans during the course of pre-surgical evaluation. The RS-fMRI data were analyzed using a previously trained resting-state network classifier. The T-fMRI data were analyzed using conventional techniques. Group-level results obtained by both methods were evaluated in terms of two outcome measures: (1) inter-subject variability of response magnitude and (2) sensitivity/specificity analysis of response topography, taking as ground truth previously reported maps of the language system based on intraoperative cortical mapping as well as meta-analytic maps of language task fMRI responses. RESULTS: Both fMRI methods localized major components of the language system (areas of Broca and Wernicke) although not with equal inter-subject consistency. Word-stem completion T-fMRI strongly activated Broca\u27s area but also several task-general areas not specific to language. RS-fMRI provided a more specific representation of the language system. CONCLUSION: We demonstrate several advantages of classifier-based mapping of language representation in the brain. Language T-fMRI activated task-general (i.e., not language-specific) functional systems in addition to areas of Broca and Wernicke. In contrast, classifier-based analysis of RS-fMRI data generated maps confined to language-specific regions of the brain

Learned spectral decoloring enables photoacoustic oximetry.

Funder: Projekt DEALThe ability of photoacoustic imaging to measure functional tissue properties, such as blood oxygenation sO[Formula: see text], enables a wide variety of possible applications. sO[Formula: see text] can be computed from the ratio of oxyhemoglobin HbO[Formula: see text] and deoxyhemoglobin Hb, which can be distuinguished by multispectral photoacoustic imaging due to their distinct wavelength-dependent absorption. However, current methods for estimating sO[Formula: see text] yield inaccurate results in realistic settings, due to the unknown and wavelength-dependent influence of the light fluence on the signal. In this work, we propose learned spectral decoloring to enable blood oxygenation measurements to be inferred from multispectral photoacoustic imaging. The method computes sO[Formula: see text] pixel-wise, directly from initial pressure spectra [Formula: see text], which represent initial pressure values at a fixed spatial location [Formula: see text] over all recorded wavelengths [Formula: see text]. The method is compared to linear unmixing approaches, as well as pO[Formula: see text] and blood gas analysis reference measurements. Experimental results suggest that the proposed method is able to obtain sO[Formula: see text] estimates from multispectral photoacoustic measurements in silico, in vitro, and in vivo

What traits are carried on mobile genetic elements, and why?

Although similar to any other organism, prokaryotes can transfer genes vertically from mother cell to daughter cell, they can also exchange certain genes horizontally. Genes can move within and between genomes at fast rates because of mobile genetic elements (MGEs). Although mobile elements are fundamentally self-interested entities, and thus replicate for their own gain, they frequently carry genes beneficial for their hosts and/or the neighbours of their hosts. Many genes that are carried by mobile elements code for traits that are expressed outside of the cell. Such traits are involved in bacterial sociality, such as the production of public goods, which benefit a cell's neighbours, or the production of bacteriocins, which harm a cell's neighbours. In this study we review the patterns that are emerging in the types of genes carried by mobile elements, and discuss the evolutionary and ecological conditions under which mobile elements evolve to carry their peculiar mix of parasitic, beneficial and cooperative genes

inGeno – an integrated genome and ortholog viewer for improved genome to genome comparisons

BACKGROUND: Systematic genome comparisons are an important tool to reveal gene functions, pathogenic features, metabolic pathways and genome evolution in the era of post-genomics. Furthermore, such comparisons provide important clues for vaccines and drug development. Existing genome comparison software often lacks accurate information on orthologs, the function of similar genes identified and genome-wide reports and lists on specific functions. All these features and further analyses are provided here in the context of a modular software tool "inGeno" written in Java with Biojava subroutines. RESULTS: InGeno provides a user-friendly interactive visualization platform for sequence comparisons (comprehensive reciprocal protein – protein comparisons) between complete genome sequences and all associated annotations and features. The comparison data can be acquired from several different sequence analysis programs in flexible formats. Automatic dot-plot analysis includes output reduction, filtering, ortholog testing and linear regression, followed by smart clustering (local collinear blocks; LCBs) to reveal similar genome regions. Further, the system provides genome alignment and visualization editor, collinear relationships and strain-specific islands. Specific annotations and functions are parsed, recognized, clustered, logically concatenated and visualized and summarized in reports. CONCLUSION: As shown in this study, inGeno can be applied to study and compare in particular prokaryotic genomes against each other (gram positive and negative as well as close and more distantly related species) and has been proven to be sensitive and accurate. This modular software is user-friendly and easily accommodates new routines to meet specific user-defined requirements

Influence of viral genes on the cell-to-cell spread of RNA silencing

The turnip crinkle virus-based vector TCV–GFPΔCP had been devised previously to study cell-to-cell and long-distance spread of virus-induced RNA silencing. TCV–GFPΔCP, which had been constructed by replacing the coat protein (CP) gene with a green fluorescent protein (GFP) coding sequence, was able to induce RNA silencing in single epidermal cells, from which RNA silencing spread from cell-to-cell. Using this unique local silencing assay together with mutagenesis analysis, two TCV genes, p8 and p9, which were involved in the intercellular spread of virus-induced RNA silencing, were identified. TCV–GFPΔCP and its p8- or p9-mutated derivatives, TCVmp8–GFPΔCP and TCVmp9–GFPΔCP, replicated efficiently but were restricted to single Nicotiana benthamiana epidermal cells. TCV–GFPΔCP, TCVmp8–GFPΔCP, or TCVmp9–GFPΔCP was able to initiate RNA silencing that targeted and degraded recombinant viral RNAs in inoculated leaves of the GFP-expressing N. benthamiana line 16c. However, cell-to-cell spread of silencing to form silencing foci was triggered only by TCV–GFPΔCP. Non-replicating TCVmp88–GFPΔCP and TCVmp28mp88–GFPΔCP with dysfunctional replicase genes, and single-stranded gfp RNA did not induce RNA silencing. Transient expression of the TCV p9 protein could effectively complement TCVmp9–GFPΔCP to facilitate intercellular spread of silencing. These data suggest that the plant cellular trafficking machinery could hijack functional viral proteins to permit cell-to-cell movement of RNA silencing