Theoretical considerations on factors confounding the interpretation of the oceanic carbon export ratio

Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Theoretical considerations on factors confounding the interpretation of the oceanic carbon export ratio. Global Biogeochemical Cycles, 32(11), (2018); 1644-1658, doi:10.1029/2018GB006003.The fraction of primary production exported out of the surface ocean, known as the export ratio (ef ratio), is often used to assess how various factors, including temperature, primary production, phytoplankton size, and community structure, affect the export efficiency of an ecosystem. To investigate possible causes for reported discrepancies in the dominant factors influencing the export efficiency, we develop a metabolism‐based mechanistic model of the ef ratio. Consistent with earlier studies, we find based on theoretical considerations that the ef ratio is a negative function of temperature. We show that the ef ratio depends on the optical depth, defined as the physical depth times the light attenuation coefficient. As a result, varying light attenuation may confound the interpretation of ef ratio when measured at a fixed depth (e.g., 100 m) or at the base of the mixed layer. Finally, we decompose the contribution of individual factors on the seasonality of the ef ratio. Our results show that at high latitudes, the ef ratio at the base of mixed layer is strongly influenced by mixed layer depth and surface irradiation on seasonal time scales. Future studies should report the ef ratio at the base of the euphotic layer or account for the effect of varying light attenuation if measured at a different depth. Overall, our modeling study highlights the large number of factors confounding the interpretation of field observations of the ef ratio.Z. L was supported by a NASA Earth and Space Science Fellowship (Grant NNX13AN85H) and the Postdoctoral Scholarship Program at Woods Hole Oceanographic Institution. N. C. was supported by NASA Grant 5109296. Satellite data, nutrient concentration, and monthly MLD climatology are downloaded from NASA ocean color (http://oceancolor.gsfc.nasa.gov/cms/), World Ocean Atlas (https://www.nodc.noaa.gov/OC5/woa13/), and http://www.ifremer.fr/cerweb/deboyer/mld/home.php, respectively.2019-04-1

An improved comparison of atmospheric Ar/N2 time series and paired ocean-atmosphere model predictions

Ar/N2 variations in the atmosphere reflect ocean heat fluxes, air-sea gas exchange, and atmospheric dynamics. Here atmospheric Ar/N2 time series are compared to paired ocean-atmosphere model predictions. Agreement between Ar/N2 observations and simulations has improved in comparison to a previous study because of longer time series and the introduction of automated samplers at several of the atmospheric stations, as well as the refinement of the paired ocean-atmosphere models by inclusion of Ar and N2 as active tracers in the ocean component. Although analytical uncertainties and collection artifacts are likely to be mainly responsible for observed Ar/N2 outliers, air parcel back-trajectory analysis suggests that some of the variability in Ar/N2 measurements could be due to the low-altitude history of the air mass collected and, by extension, the local oceanic Ar/N2 signal. Although the simulated climatological seasonal cycle can currently be evaluated with Ar/N2 observations, longer time series and additional improvements in the signal-to-noise ratio will be required to test other model predictions such as interannual variability, latitudinal gradients, and the secular increase in atmospheric Ar/N2 expected to result from ocean warming. Copyright 2008 by the American Geophysical Union

Export production and its regulating factors in the West Antarctica Peninsula region of the Southern Ocean

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Global Biogeochemical Cycles 26 (2012): GB2005, doi:10.1029/2010GB004028.In connection with the Palmer LTER program, mixed layer water samples were collected during the cruise of the L.M. Gould in Jan., 2008 at 49 stations on a 20 × 100 km grid in the West Antarctica Peninsula (WAP) region of the Southern Ocean. In this study, [O2]/[Ar] ratios and the triple isotope composition of dissolved O2 were measured, and were used to estimate net community O2 production (NCP) and gross primary O2 production (GPP), respectively. These estimates are further converted to carbon export production, primary production and the f-ratio. Our measurements give NCP ranging from −3 to 76 mmol O2 m−2 day−1 (−25 to 650 mg C m−2 day−1), and GPP from 40 to 220 mmol O2 m−2 day−1 (180 to 1010 mg C m−2 day−1). The O2 NCP/GPP ratios range from −0.04 to 0.43, corresponding to f-ratios of −0.08 to 0.83. NCP and the NCP/GPP ratio are highest in the northern coastal areas, and decrease to lower values toward the southern coastal area and the open ocean. The inshore-offshore gradient appears to be regulated primarily by iron availability, as supported by the positive correlation between NCP and Fv/Fm ratios (r2 = 0.22, p < 0.05). Mixed layer depth (MLD) is inversely correlated with NCP (r2 = 0.21, p < 0.002) and NCP/GPP (r2 = 0.21, p < 0.02), and highest NCP occurred in the fresh water lenses probably formed from melted coastal glaciers. These results suggest that export production and the f-ratio increase where water stratification is intensified by input of fresh meltwater, and that mixed layer stratification is the major factor regulating NCP in the inner-shelf and coastal regions. Along-shelf variability of phytoplankton community composition is highly correlated with NCP, i.e., NCP increases when the diatom-dominated community in the south transitions to the cryptophyte-dominated one in the north. A high correlation is also observed between NCP and the logarithm of the surface chlorophyll concentration (r2 = 0.72, p < 0.0001) , which makes it possible to estimate carbon export as a function of Chl a concentration in this region.This research was supported by NSF-OPP grant 0823101 to Ducklow and NASA Earth and Space Sciences Fellowship to Huang.2012-10-2

An advective mechanism for Deep Chlorophyll Maxima formation in southern Drake Passage

We observe surface and subsurface fluorescence-derived chlorophyll maxima in southern Drake Passage during austral summer. Backscatter measurements indicate that the deep chlorophyll maxima (DCMs) are also deep biomass maxima, and euphotic depth estimates show that they lie below the euphotic layer. Subsurface, offshore and near-surface, onshore features lie along the same isopycnal, suggesting advective generation of DCMs. Temperature measurements indicate a warming of surface waters throughout austral summer, capping the winter water (WW) layer and increasing off-shelf stratification in this isopycnal layer. The outcrop position of the WW isopycnal layer shifts onshore, into a surface phytoplankton bloom. A lateral potential vorticity (PV) gradient develops, such that a down-gradient PV flux is consistent with offshore, along-isopycnal tracer transport. Model results are consistent with this mechanism. Subduction of chlorophyll and biomass along isopycnals represents a biological term not observed by surface satellite measurements which may contribute significantly to the strength of the biological pump in this region

Impact of variable air-sea O2 and CO2 fluxes on atmospheric potential oxygen (APO) and land-ocean carbon sink partitioning

© 2008 Author(s). This article is distributed under the terms of the Creative Commons Attribution 3.0 License. The definitive version was published in Biogeosciences 5 (2008): 875-899, doi:10.5194/bg-5-875-2008A three dimensional, time-evolving field of atmospheric potential oxygen (APO ~O2/N2+CO2) was estimated using surface O2, N2 and CO2 fluxes from the WHOI ocean ecosystem model to force the MATCH atmospheric transport model. Land and fossil carbon fluxes were also run in MATCH and translated into O2 tracers using assumed O2:CO2 stoichiometries. The modeled seasonal cycles in APO agree well with the observed cycles at 13 global monitoring stations, with agreement helped by including oceanic CO2 in the APO calculation. The modeled latitudinal gradient in APO is strongly influenced by seasonal rectifier effects in atmospheric transport. An analysis of the APO-vs.-CO2 mass-balance method for partitioning land and ocean carbon sinks was performed in the controlled context of the MATCH simulation, in which the true surface carbon and oxygen fluxes were known exactly. This analysis suggests uncertainty of up to ±0.2 PgC in the inferred sinks due to variability associated with sparse atmospheric sampling. It also shows that interannual variability in oceanic O2 fluxes can cause large errors in the sink partitioning when the method is applied over short timescales. However, when decadal or longer averages are used, the variability in the oceanic O2 flux is relatively small, allowing carbon sinks to be partitioned to within a standard deviation of 0.1 Pg C/yr of the true values, provided one has an accurate estimate of long-term mean O2 outgassing.We acknowledge the support of NASA grant NNG05GG30G and NSF grant ATM0628472

Marine diatom proteorhodopsins and their potential role in coping with low iron availability

Proteorhodopsins (PR) are retinal-binding membrane proteins that function as light-driven proton pumps to generate energy for metabolism and growth. Recently PR-like genes have been identified in some marine eukaryotic protists, including diatoms, dinoflagellates, haptophytes and cryptophytes. These rhodopsins are homologous to green-light-absorbing, ATP-generating PRs present within bacteria. Here we show that in the oceanic diatom Pseudo-nitzschia granii, PR-like gene and protein expressions increase appreciably under iron limitation. In a survey of available transcriptomes, PR-like genes in diatoms are generally found in isolates from marine habitats where seasonal to chronic growth limitation by the micronutrient iron is prevalent, yet similar biogeographical patterns are not apparent in other phytoplankton taxa. We propose that rhodopsin-based phototrophy could account for a proportion of energy synthesis in marine eukaryotic photoautotrophs, especially when photosynthesis is compromised by low iron availability. This alternative ATP-generating pathway could have significant effects on plankton community structure and global ocean carbon cycling

The imprint of the Slave Trade in an African American population: mitochondrial DNA, Y chromosome and HTLV-1 analysis in the Noir Marron of French Guiana

<p>Abstract</p> <p>Background</p> <p>Retracing the genetic histories of the descendant populations of the Slave Trade (16^th-19^thcenturies) is particularly challenging due to the diversity of African ethnic groups involved and the different hybridisation processes with Europeans and Amerindians, which have blurred their original genetic inheritances. The Noir Marron in French Guiana are the direct descendants of maroons who escaped from Dutch plantations in the current day Surinam. They represent an original ethnic group with a highly blended culture. Uniparental markers (mtDNA and NRY) coupled with HTLV-1 sequences (<it>env </it>and LTR) were studied to establish the genetic relationships linking them to African American and African populations.</p> <p>Results</p> <p>All genetic systems presented a high conservation of the African gene pool (African ancestry: mtDNA = 99.3%; NRY = 97.6%; HTLV-1 e<it>nv </it>= 20/23; HTLV-1 LTR = 6/8). Neither founder effect nor genetic drift was detected and the genetic diversity is within a range commonly observed in Africa. Higher genetic similarities were observed with the populations inhabiting the Bight of Benin (from Ivory Coast to Benin). Other ancestries were identified but they presented an interesting sex-bias. Whilst male origins spread throughout the north of the bight (from Benin to Senegal), female origins were spread throughout the south (from the Ivory Coast to Angola).</p> <p>Conclusions</p> <p>The Noir Marron are unique in having conserved their African genetic ancestry, despite major cultural exchanges with Amerindians and Europeans through inhabiting the same region for four centuries. Their maroon identity and the important number of slaves deported in this region have maintained the original African diversity. All these characteristics permit to identify a major origin located in the former region of the Gold Coast and the Bight of Benin; regions highly impacted by slavery, from which goes a sex-biased longitudinal gradient of ancestry.</p

An advective mechanism for Deep Chlorophyll Maxima formation in southern Drake Passage

We observe surface and subsurface fluorescence-derived chlorophyll maxima in southern Drake Passage during austral summer. Backscatter measurements indicate that the deep chlorophyll maxima (DCMs) are also deep biomass maxima, and euphotic depth estimates show that they lie below the euphotic layer. Subsurface, offshore and near-surface, onshore features lie along the same isopycnal, suggesting advective generation of DCMs. Temperature measurements indicate a warming of surface waters throughout austral summer, capping the winter water (WW) layer and increasing off-shelf stratification in this isopycnal layer. The outcrop position of the WW isopycnal layer shifts onshore, into a surface phytoplankton bloom. A lateral potential vorticity (PV) gradient develops, such that a down-gradient PV flux is consistent with offshore, along-isopycnal tracer transport. Model results are consistent with this mechanism. Subduction of chlorophyll and biomass along isopycnals represents a biological term not observed by surface satellite measurements which may contribute significantly to the strength of the biological pump in this region

Atmospheric O2/N2 changes, 1993-2002: Implications for the partitioning of fossil fuel CO2 sequestration

Improvements made to an established mass spectrometric method for measuring changes in atmospheric O2/N2 are described. With the improvements in sample handling and analysis, sample throughput and analytical precision have both increased. Aliquots from duplicate flasks are repeatedly measured over a period of 2 weeks, with an overall standard error in each flask of 3-4 per meg, corresponding to 0.6-0.8 ppm O2 in air. Records of changes in O2/N2 from six global sampling stations (Barrow, American Samoa, Cape Grim, Amsterdam Island, Macquarie Island, and Syowa Station) are presented. Combined with measurements Of CO2 from the same sample flasks, land and ocean carbon uptake were calculated from the three sampling stations with the longest records (Barrow, Samoa, and Cape Grim). From 1994-2002, We find the average CO2 uptake by the ocean and the land biosphere was 1.7 ± 0.5 and 1.0 ± 0.6 GtC yr -1 respectively; these numbers include a correction of 0.3 Gt C yr-l due to secular outgassing of ocean O2. Interannual variability calculated from these data shows a strong land carbon source associated with the 1997-1998 El Niño event, supporting many previous studies indicating that high atmospheric growth rates observed during most El Niño events reflect diminished land uptake. Calculations of interannual variability in land and ocean uptake are probably confounded by non-zero annual air sea fluxes of O2. The origin of these fluxes is not yet understood. Copyright 2005 by the American Geophysical Union