Silicene-based DNA nucleobase sensing

We propose a DNA sequencing scheme based on silicene nanopores. Using first principles theory, we compute the electrical properties of such pores in the absence and presence of nucleobases. Within a two-terminal geometry, we analyze the current-voltage relation in the presence of nucleobases with various orientations. We demonstrate that when nucleobases pass through a pore, even after sampling over many orientations, changes in the electrical properties of the ribbon can be used to discriminate between bases

Evolutionary history of the ADRB2 gene in humans

No abstract available

Sculpting molecular structures from bilayer graphene and other materials

We demonstrate a technique for creating unique forms of pure sp(2)-bonded carbon and unprecedented heteromolecules. These new structures, which we refer to as sculpturenes, are formed by sculpting selected shapes from bilayer graphene, heterobilayers, or multilayered materials and allowing the shapes to spontaneously reconstruct. The simplest sculpturene is topologically equivalent to a torus, with dimensions comparable to those of fullerenes. The topology of these new molecular structures is stable against atomic-scale defects. We demonstrate that sculpturenes can form the basic building blocks of hollow, multiconnected structures, with potential applications to nanofluidics and nanoelectronics

Electronic properties of sculpturenes

We investigate the electronic properties of sculpturenes, formed by sculpting selected shapes from bilayer graphene, boron nitride or graphene-boron nitride hetero-bilayers and allowing the shapes to spontaneously reconstruct. The simplest sculpturenes are periodic nanotubes, containing lines of non-hexagonal rings. More complex sculpturenes formed from shapes with non-trivial topologies, connectivities and materials combinations may also be constructed. Results are presented for the reconstructed geometries, electronic densities of states and current-voltage relations of these new structures

Resource Pulses Increase the Diversity of Successful Competitors in a Multi-Species Stream Fish Assemblage

Food resources are often patchily distributed through space and time and are classified as resource pulses when hyperabundant. Resource pulses can benefit growth, reproduction, and abundance of various consumers. Yet, it is relatively unknown how such resources are partitioned among competing consumers and how this is influenced by the magnitude of the pulse. Here, we examined how the magnitude of a pulsed resource influences resource partitioning among diverse sizes and species of consumers in a natural setting over small spatial and temporal scales. We focused on salmon egg subsidies to stream fish consumers. We experimentally added different quantities of pink salmon eggs to five meter long experimental stream sections. Egg additions spanned three orders of magnitude from 6 to 3575 eggs. Stream fish (egg consumers) were captured and gastric lavaged at each experimental section to determine how many eggs each individual fish consumed. We modeled taxon‐specific individual egg consumption as a function of egg availability, individual mass, community composition, number of competitors, and stream velocity using hurdle models in a Bayesian framework. We found that there were diminishing returns for increasing egg abundance increasing egg consumption (i.e., type II functional response) for individual size classes of fish, but that higher egg numbers were needed to benefit diverse consumers. Top models indicated that egg availability and individual fish characteristics (size and taxon) drove egg consumption, while community characteristics (species composition and number of competitors) were not supported. Our results suggest that resource pulses can provide rare opportunities for less dominant sizes and species of fish to consume abundant resources. The current paradigm in the stream fish literature suggests that stream fish communities are structured by dominance hierarchies; however, dominance hierarchies may be less influential where pulsed resources comprise a large portion of the resource base

Invasion risk of active and diapausing invertebrates from residual ballast in ships entering Chesapeake Bay

ABSTRACT: We examined the invasion risk posed by active invertebrates and their diapausing stages (e.g. resting eggs, quiescent adults) carried in residual sediment and water of non-ballasted ships to Chesapeake Bay. Many taxa were recorded that are not native to Chesapeake Bay, supporting the contention that residual ballast represents an invasion vector of some risk to marine systems. Composition and propagule supply differed relative to that in ships entering the Laurentian Great Lakes (e.g. marine taxa dominated in Chesapeake Bay ships), indicating that risk varies geographically. Average abundances of active invertebrates in residual sediment (1002.1 ind. kg–1) and water (2.7 ind. l–1), and diapausing eggs in sediments (779.4 eggs kg–1), were typically low relative to those in ships entering the Great Lakes (1322.5 ind. kg–1, 10.9 ind. l–1 and 3650.0 eggs kg–1, respectively). However, due to high variability among ships, differences were not statistically significant. The major cause of composition and abundance differences is dissimilar trade routes between each system, with vessels entering Chesapeake Bay primarily originating from marine rather than freshwater ports, and because diapausing stages are less commonly found among marine invertebrates. Low propagule supplies, predominant intra-continental ship movements, and salinity disparity between the upper (20 to 28‰) and lower (3 to 8‰) regions of Chesapeake Bay (where ballast water is loaded and offloaded) may greatly reduce invasion risk and be a contributing factor to the bay’s low invasion rate: invasion risk from non-ballasted ships here may be low relative to hull fouling or ballast water discharge. Other marine coastal areas may be at greater risk from this vector

Sensing single molecules with carbon-boronnitride nanotubes

We investigate the molecular sensing properties of carbon nanotube-boron nitride-carbon nanotube (CNT-BN-CNT) junctions. We demonstrate that the electrical conductance of such a junction changes in response to the binding of an analyte molecule to the region of BN. The change in conductance depends on the length of the BN spacer and the position of the analyte and therefore we propose a method of statistically analysing conductance data. We demonstrate the ability to discriminate between analytes, by computing the conductance changes due to three analytes (benzene, thiol-capped oligoyne and a pyridyl-capped oligoyne) binding to junctions with five different lengths of BN spacer

Negative differential electrical resistance of a rotational organic nanomotor

A robust, nanoelectromechanical switch is proposed based upon an asymmetric pendant moiety anchored to an organic backbone between two C60 fullerenes, which in turn are connected to gold electrodes. Ab initio density functional calculations are used to demonstrate that an electric field induces rotation of the pendant group, leading to a nonlinear current–voltage relation. The nonlinearity is strong enough to lead to negative differential resistance at modest source–drain voltages

A study of planar anchor groups for graphene-based single-molecule electronics

To identify families of stable planar anchor groups for use in single molecule electronics, we report detailed results for the binding energies of two families of anthracene and pyrene derivatives adsorbed onto graphene. We find that all the selected derivatives functionalized with either electron donating or electron accepting substituents bind more strongly to graphene than the parent non-functionalized anthracene or pyrene. The binding energy is sensitive to the detailed atomic alignment of substituent groups over the graphene substrate leading to larger than expected binding energies for –OH and –CN derivatives. Furthermore, the ordering of the binding energies within the anthracene and pyrene series does not simply follow the electron affinities of the substituents. Energy barriers to rotation or displacement on the graphene surface are much lower than binding energies for adsorption and therefore at room temperature, although the molecules are bound to the graphene, they are almost free to move along the graphene surface. Binding energies can be increased by incorporating electrically inert side chains and are sensitive to the conformation of such chains