Multispectral Remote Sensing for Yield Estimation Using High-Resolution Imagery From an Unmanned Aerial Vehicle

Satellites and autonomous unmanned aerial vehicles (UAVs) are two major platforms for acquiring remotely-sensed information of the earth’s surface. Due to the limitations of satellite-based imagery, such as coarse spatial resolution and fixed schedules, applications of UAVs as low-cost remote sensing systems are rapidly expanding in many research areas, particularly precision agriculture. UAVs can provide imagery with high spatial resolution (finer than 1 meter) and acquire information in visible, near infrared, and even thermal bands. In agriculture, vegetation characteristics such as health, water stress, and the amount of biomass, can be estimated using UAV imagery. In this study, three sets of high-resolution aerial imagery have been used for yield estimation based on vegetation indices. These images were captured by the Utah State University AggieAir™ UAV system flown in June 2017, August 2017, and October 2017 over a field experiment pasture site located in northern Utah. The pasture study area is primarily tall fescue. The field experiment includes 20 50 x 20-m plots, with 4 replications of 5 irrigation levels. Approximately 60 yield samples were harvested after each flight. Sample locations were recorded with high-accuracy real-time kinematic (RTK) GPS. In addition, the leaf area index (LAI) for each sample plot was measured using an optical sensor (LAI2200C) before harvesting. The relationship of yield for each sample versus vegetation indices (VIs) was explored. The VIs include the normalized difference vegetation index (NDVI), calculated using AggieAir imagery, and LAI measured using a ground-based sensor. The results of this study reveal the correlation between vegetation indices and the amount of biomass

Spatial and Temporal Analysis of Precipitation and Effective Rainfall Using Gauge Observations, Satellite, and Gridded Climate Data for Agricultural Water Management in the Upper Colorado River Basin

Accurate spatial and temporal precipitation estimates are important for hydrological studies of irrigation depletion, net irrigation requirement, natural recharge, and hydrological water balances in defined areas. This analysis supports the verification of water savings (reduced depletion)from deficit irrigation of pastures in the Upper Colorado River Basin. The study area has diverse topography with scattered fields and few precipitation gauges that are not representative of the basin.Gridded precipitation products from TRMM-3B42, PRISM, Daymet, and gauge observations were evaluated on two case studies located in Colorado and Wyoming during the 2014–2016 irrigation seasons. First, the resolution at the farm level is discussed. Next, bias occurrence at different timescales (daily to monthly) is evaluated and addressed. Then, the coverage area of the gauge station, along with the impact of the dominant wind direction on the shape of the coverage area, is evaluated. Ultimately, available actual ET maps derived from the METRIC model are used to estimate spatial effective rainfall. The results show that the spatial resolutions of TRMM and PRISM are not adequate at the farm level, while Daymet is a better fit but lacks the adequate latency versus TRMM andPRISM. When compared against local weather station records, all three spatial datasets were found to have a bias that decreases at coarser temporal intervals. However, the performance of Daymet andPRISM at the monthly time step is acceptable, and they can be used for water resource management at the farm level. The adequacy of an existing gauge station for a given farm location depends on the willingness to accept the risk of the bias associated with a non-persistent, non-symmetric gauge coverage area that is highly correlated with the dominant wind direction. Among all goodness off it statistics considered in the study, the interpretation of the summation of error makes more sense for quantifying the rainfall bias and risk for the user. Finally, based on the USDA-SCS model and actual spatial ET, overall, seasonal effective rainfall tends to be less than 60% of total rainfall for agricultural lands

Implications of Sensor Inconsistencies and Remote Sensing Error in the Use of Small Unmanned Aerial Systems for Generation of Information Products for Agricultural Management

Small, unmanned aerial systems (sUAS) for remote sensing represent a relatively new and growing technology to support decisions for agricultural operations. The size and power limitations of these systems present challenges for the weight, size, and capability of the sensors that can be carried, as well as the geographical coverage that is possible. These factors, together with a lack of standards for sensor technology, its deployment, and data analysis, lead to uncertainties in data quality that can be difficult to detect or characterize. These, in turn, limit comparability between data from different sources and, more importantly, imply limits on the analyses that can be accomplished with the data that are acquired with sUAS. This paper offers a simple statistical examination of the implications toward information products of an array of sensor data uncertainty issues. The analysis relies upon high-resolution data collected in 2016 over a commercial vineyard, located near Lodi, California, for the USDA Agricultural Research Service Grape Remote sensing Atmospheric Profile and Evapotranspiration eXperiment (GRAPEX) Program. A Monte Carlo analysis is offered of how uncertainty in sensor spectral response and/or orthorectification accuracy can affect the estimation of information products of potential interest to growers, as illustrated in the form of common vegetation indices

Estimation of Soil Moisture at Different Soil Levels Using Machine Learning Techniques and Unmanned Aerial Vehicle (UAV) Multispectral Imagery

Soil moisture is a key component of water balance models. Physically, it is a nonlinear function of parameters that are not easily measured spatially, such as soil texture and soil type. Thus, several studies have been conducted on the estimation of soil moisture using remotely sensed data and data mining techniques such as artificial neural networks (ANNs) and support vector machines (SVMs). However, all models developed based on these techniques are limited to site-specific applications where they are trained and their parameters are tuned. Moreover, since the system of non-linear equations produced by and conducted in the machine learning process are not accessible to researchers, each application of these machine learning approaches must repeat these training steps for any new study area. The fact that the results of this machine learning, black box approach cannot be easily transferred to different locations for extraction of soil moisture estimates is frustrating, and it can lead to inaccurate comparisons between methods or model performance. To overcome the Black-box issue, this study employed a powerful technique called genetic programming (GP), which is a combination of an evolutionary algorithm and artificial intelligence, to simulate soil moisture at different levels using high-resolution, multispectral imagery acquired with an unmanned aerial vehicle (UAV). The output of this approach is either a linear or nonlinear empirical equation that can be used by others. The performance of GP was compared with ANN and SVM modeling results. Several sets of high-resolution aerial imagery captured by the Utah State University AggieAir UAV system over two experimental pasture sites located in northern and southern Utah were used for this soil moisture estimation approach. The inputs used to train these models include the reflectance for the visible, near-infrared (NIR), and thermal bands. The results show (1) the performance of GP versus ANN and SVM and (2) the master equation provided by GP, which can be used in other locations and applications

Assessment of different methods for shadow detection in high-resolution optical imagery and evaluation of shadow impact on calculation of NDVI, and evapotranspiration

Significant efforts have been made recently in the application of high-resolution remote sensing imagery (i.e., sub-meter) captured by unmanned aerial vehicles (UAVs) for precision agricultural applications for high-value crops such as wine grapes. However, at such high resolution, shadows will appear in the optical imagery effectively reducing the reflectance and emission signal received by imaging sensors. To date, research that evaluates procedures to identify the occurrence of shadows in imagery produced by UAVs is limited. In this study, the performance of four different shadow detection methods used in satellite imagery was evaluated for high-resolution UAV imagery collected over a California vineyard during the Grape Remote sensing Atmospheric Profile and Evapotranspiration eXperiment (GRAPEX) field campaigns. The performance of the shadow detection methods was compared and impacts of shadowed areas on the normalized difference vegetation index (NDVI) and estimated evapotranspiration (ET) using the Two-Source Energy Balance (TSEB) model are presented. The results indicated that two of the shadow detection methods, the supervised classification and index-based methods, had better performance than two other methods. Furthermore, assessment of shadowed pixels in the vine canopy led to significant differences in the calculated NDVI and ET in areas affected by shadows in the high-resolution imagery. Shadows are shown to have the greatest impact on modeled soil heat flux, while net radiation and sensible heat flux are less affected. Shadows also have an impact on the modeled Bowen ratio (ratio of sensible to latent heat) which can be used as an indicator of vine stress level.info:eu-repo/semantics/acceptedVersio

Assessment of Different Methods for Shadow Detection in High-Resolution Optical Imagery and Evaluation of Shadow Impact on Calculation of NDVI and Evapotranspiration

Significant efforts have been made recently in the application of high-resolution remote sensing imagery (i.e., sub-meter) captured by unmanned aerial vehicles (UAVs) for precision agricultural applications for high-value crops such as wine grapes. However, at such high resolution, shadows will appear in the optical imagery effectively reducing the reflectance and emission signal received by imaging sensors. To date, research that evaluates procedures to identify the occurrence of shadows in imagery produced by UAVs is limited. In this study, the performance of four different shadow detection methods used in satellite imagery was evaluated for high-resolution UAV imagery collected over a California vineyard during the Grape Remote sensing Atmospheric Profile and Evapotranspiration eXperiment (GRAPEX) field campaigns. The performance of the shadow detection methods was compared and impacts of shadowed areas on the normalized difference vegetation index (NDVI) and estimated evapotranspiration (ET) using the Two-Source Energy Balance (TSEB) model are presented. The results indicated that two of the shadow detection methods, the supervised classification and index-based methods, had better performance than two other methods. Furthermore, assessment of shadowed pixels in the vine canopy led to significant differences in the calculated NDVI and ET in areas affected by shadows in the high-resolution imagery. Shadows are shown to have the greatest impact on modeled soil heat flux, while net radiation and sensible heat flux are less affected. Shadows also have an impact on the modeled Bowen ratio (ratio of sensible to latent heat) which can be used as an indicator of vine stress level

Estimation of Surface Thermal Emissivity in a Vineyard for UAV Microbolometer Thermal Cameras Using NASA HyTES Hyperspectral Thermal, and Landsat and AggieAir Optical Data

Microbolometer thermal cameras in UAVs and manned aircraft allow for the acquisition of highresolution temperature data, which, along with optical reflectance, contributes to monitoring and modeling of agricultural and natural environments. Furthermore, these temperature measurements have facilitated the development of advanced models of crop water stress and evapotranspiration in precision agriculture and heat fluxes exchanges in small river streams and corridors. Microbolometer cameras capture thermal information at blackbody or radiometric settings (narrowband emissivity equates to unity). While it is customary that the modeler uses assumed emissivity values (e.g. 0.99– 0.96 for agricultural and environmental settings); some applications (e.g. Vegetation Health Index), and complex models such as energy balance-based models (e.g. evapotranspiration) could benefit from spatial estimates of surface emissivity for true or kinetic temperature mapping. In that regard, this work presents an analysis of the spectral characteristics of a microbolometer camera with regard to emissivity, along with a methodology to infer thermal emissivity spatially based on the spectral characteristics of the microbolometer camera. For this work, the MODIS UCBS Emissivity Library, NASA HyTES hyperspectral emissivity, Landsat, and Utah State University AggieAir UAV surface reflectance products are employed. The methodology is applied to a commercial vineyard agricultural setting located in Lodi, California, where HyTES, Landsat, and AggieAir UAV spatial data were collected in the 2014 growing season. Assessment of the microbolometer spectral response with regards to emissivity and emissivity modeling performance for the area of study are presented and discussed

Estimation of Evapotranspiration and Energy Fluxes Using a Deep-Learning-Based High-Resolution Emissivity Model and the Two-Source Energy Balance Model with sUAS Information

Surface temperature is necessary for the estimation of energy fluxes and evapotranspiration from satellites and airborne data sources. For example, the Two-Source Energy Balance (TSEB) model uses thermal information to quantify canopy and soil temperatures as well as their respective energy balance components. While surface (also called kinematic) temperature is desirable for energy balance analysis, obtaining this temperature is not straightforward due to a lack of spatially estimated narrowband (sensor-specific) and broadband emissivities of vegetation and soil, further complicated by spectral characteristics of the UAV thermal camera. This study presents an effort to spatially model narrowband and broadband emissivities for a microbolometer thermal camera at UAV information resolution (~0.15 m) based on Landsat and NASA HyTES information using a deep learning (DL) model. The DL model is calibrated using equivalent optical Landsat / UAV spectral information to spatially estimate narrowband emissivity values of vegetation and soil in the 7–14- nm range at UAV resolution. The resulting DL narrowband emissivity values were then used to estimate broadband emissivity based on a developed narrowband-broadband emissivity relationship using the MODIS UCSB Emissivity Library database. The narrowband and broadband emissivities were incorporated into the TSEB model to determine their impact on the estimation of instantaneous energy balance components against ground measurements. The proposed effort was applied to information collected by the Utah State University AggieAir small Unmanned Aerial Systems (sUAS) Program as part of the ARS-USDA GRAPEX Project (Grape Remote sensing Atmospheric Profile and Evapotranspiration eXperiment) over a vineyard located in Lodi, California. A comparison of resulting energy balance component estimates, with and without the inclusion of high-resolution narrowband and broadband emissivities, against eddy covariance (EC) measurements under different scenarios are presented and discussed

Incorporation of Unmanned Aerial Vehicle (UAV) Point Cloud Products into Remote Sensing Evapotranspiration Models

In recent years, the deployment of satellites and unmanned aerial vehicles (UAVs) has led to production of enormous amounts of data and to novel data processing and analysis techniques for monitoring crop conditions. One overlooked data source amid these efforts, however, is incorporation of 3D information derived from multi-spectral imagery and photogrammetry algorithms into crop monitoring algorithms. Few studies and algorithms have taken advantage of 3D UAV information in monitoring and assessment of plant conditions. In this study, different aspects of UAV point cloud information for enhancing remote sensing evapotranspiration (ET) models, particularly the Two-Source Energy Balance Model (TSEB), over a commercial vineyard located in California are presented. Toward this end, an innovative algorithm called Vegetation Structural-Spectral Information eXtraction Algorithm (VSSIXA) has been developed. This algorithm is able to accurately estimate height, volume, surface area, and projected surface area of the plant canopy solely based on point cloud information. In addition to biomass information, it can add multi-spectral UAV information to point clouds and provide spectral-structural canopy properties. The biomass information is used to assess its relationship with in situ Leaf Area Index (LAI), which is a crucial input for ET models. In addition, instead of using nominal field values of plant parameters, spatial information of fractional cover, canopy height, and canopy width are input to the TSEB model. Therefore, the two main objectives for incorporating point cloud information into remote sensing ET models for this study are to (1) evaluate the possible improvement in the estimation of LAI and biomass parameters from point cloud information in order to create robust LAI maps at the model resolution and (2) assess the sensitivity of the TSEB model to using average/nominal values versus spatially-distributed canopy fractional cover, height, and width information derived from point cloud data. The proposed algorithm is tested on imagery from the Utah State University AggieAir sUAS Program as part of the ARS-USDA GRAPEX Project (Grape Remote sensing Atmospheric Profile and Evapotranspiration eXperiment) collected since 2014 over multiple vineyards located in California. The results indicate a robust relationship between in situ LAI measurements and estimated biomass parameters from the point cloud data, and improvement in the agreement between TSEB model output of ET with tower measurements when employing LAI and spatially-distributed canopy structure parameters derived from the point cloud data

Improvement Opportunities in the Two-Source Energy Balance Model for ET using UAV Imagery and Point Cloud Information

In recent years, satellites and unmanned aerial vehicles (UAVs) provide enormous amounts of spatially-distributed information for monitoring crop conditions by measuring crop’s reflected and emitted radiation at a distance. However, applications of high-resolution UAV imagery and its intermediate products for improving crop water use estimates are not well studied. In other words, the available approaches, methods and algorithms for determining how much water to apply for irrigation using remotely sensed data have been mostly developed at satellite spatial resolutions. High-resolution imageries that have been achieved by small UAVs open new opportunities for revisiting, re-evaluating, and revising available crop water use methods. In this study, different aspects of opportunities of UAV high-resolution imagery for enhancing remote sensing crop water use models, notably the Two-Source Energy Balance model (TSEB), over a commercial vineyard located in California are presented. In particular, this dissertation presents the impact of shadows, leaf area index (LAI) modeled from UAV 3D information, and higher-resolution temperature on the TSEB model. The high-resolution spatially-distributed crop water use derived by integration of UAV imagery into the TSEB model provides the capability to visualize spatial variations of crop water use at a compatible resolution with irrigation systems. This information is an essential part of scheduling irrigation with greater precision