Attractive regular stochastic chains: perfect simulation and phase transition

We prove that uniqueness of the stationary chain, or equivalently, of the $g$-measure, compatible with an attractive regular probability kernel is equivalent to either one of the following two assertions for this chain: (1) it is a finitary coding of an i.i.d. process with countable alphabet, (2) the concentration of measure holds at exponential rate. We show in particular that if a stationary chain is uniquely defined by a kernel that is continuous and attractive, then this chain can be sampled using a coupling-from-the-past algorithm. For the original Bramson-Kalikow model we further prove that there exists a unique compatible chain if and only if the chain is a finitary coding of a finite alphabet i.i.d. process. Finally, we obtain some partial results on conditions for phase transition for general chains of infinite order.Comment: 22 pages, 1 pseudo-algorithm, 1 figure. Minor changes in the presentation. Lemma 6 has been remove

Histone Deacetylase Inhibitors Restore Cell Surface Expression of the Coxsackie Adenovirus Receptor and Enhance CMV Promoter Activity in Castration-Resistant Prostate Cancer Cells

Adenoviral gene therapy using the death receptor ligand TRAIL as the therapeutic transgene can be safely administered via intraprostatic injection but has not been evaluated for efficacy in patients. Here we investigated the efficacy of adenoviral TRAIL gene therapy in a model of castration resistant prostate cancer and found that intratumoral injections can significantly delay tumor growth but cannot eliminate established lesions. We hypothesized that an underlying cause is inefficient adenoviral delivery. Using the LNCaP progression model of prostate cancer we show that surface CAR expression decreases with increasing tumorigenicity and that castration resistant C4-2b cells were more difficult to transduce with adenovirus than castration sensitive LNCaP cells. Many genes, including CAR, are epigenetically silenced during transformation but a new class of chemotherapeutic agents, known as histone deacetylase inhibitors (HDACi), can reverse this process. We demonstrate that HDACi restore CAR expression and infectivity in C4-2b cells and enhance caspase activation in response to infection with a TRAIL adenovirus. We also show that in cells with high surface CAR expression, HDACi further enhance transgene expression from the CMV promoter. Thus HDACi have multiple beneficial effects, which may enhance not only viral but also non-viral gene therapy of castration resistant prostate cancer

Perfect Simulation Of Processes With Long Memory: a 'Coupling Into And From The Past' Algorithm

International audienceWe describe a new algorithm for the perfect simulation of variable length Markov chains and random systems with perfect connections. This algorithm, which generalizes Propp and Wilson's simulation scheme, is based on the idea of coupling into and from the past. It improves on existing algorithms by relaxing the conditions on the kernel and by accelerating convergence, even in the simple case of finite order Markov chains. Although chains of variable or infinite order have been widely investigated for decades, their use in applied probability, from information theory to bio-informatics and linguistics, has recently led to considerable renewed interest

ANALYSIS OF SUBGROUP EFFECTS IN RANDOMIZED TRIALS WHEN SUBGROUP MEMBERSHIP IS INFORMATIVELY MISSING: APPLICATION TO THE MADIT II STUDY

In this paper, we develop and implement a general sensitivity analysis methodology for drawing inference about subgroup effects in a two-arm randomized trial when subgroup status is only known for a non-random sample in one of the trial arms. The methodology is developed in the context of the MADIT II study, a randomized trial designed to evaluate the effectiveness of implantable defibrillators on survival

Quantum-Information Theoretic Properties of Nuclei and Trapped Bose Gases

Fermionic (atomic nuclei) and bosonic (correlated atoms in a trap) systems are studied from an information-theoretic point of view. Shannon and Onicescu information measures are calculated for the above systems comparing correlated and uncorrelated cases as functions of the strength of short range correlations. One-body and two-body density and momentum distributions are employed. Thus the effect of short-range correlations on the information content is evaluated. The magnitude of distinguishability of the correlated and uncorrelated densities is also discussed employing suitable measures of distance of states i.e. the well known Kullback-Leibler relative entropy and the recently proposed Jensen-Shannon divergence entropy. It is seen that the same information-theoretic properties hold for quantum many-body systems obeying different statistics (fermions and bosons).Comment: 24 pages, 9 figures, 1 tabl

Chains of infinite order, chains with memory of variable length, and maps of the interval

We show how to construct a topological Markov map of the interval whose invariant probability measure is the stationary law of a given stochastic chain of infinite order. In particular we caracterize the maps corresponding to stochastic chains with memory of variable length. The problem treated here is the converse of the classical construction of the Gibbs formalism for Markov expanding maps of the interval

Spreading lengths of Hermite polynomials

The Renyi, Shannon and Fisher spreading lengths of the classical or hypergeometric orthogonal polynomials, which are quantifiers of their distribution all over the orthogonality interval, are defined and investigated. These information-theoretic measures of the associated Rakhmanov probability density, which are direct measures of the polynomial spreading in the sense of having the same units as the variable, share interesting properties: invariance under translations and reflections, linear scaling and vanishing in the limit that the variable tends towards a given definite value. The expressions of the Renyi and Fisher lengths for the Hermite polynomials are computed in terms of the polynomial degree. The combinatorial multivariable Bell polynomials, which are shown to characterize the finite power of an arbitrary polynomial, play a relevant role for the computation of these information-theoretic lengths. Indeed these polynomials allow us to design an error-free computing approach for the entropic moments (weighted L^q-norms) of Hermite polynomials and subsequently for the Renyi and Tsallis entropies, as well as for the Renyi spreading lengths. Sharp bounds for the Shannon length of these polynomials are also given by means of an information-theoretic-based optimization procedure. Moreover, it is computationally proved the existence of a linear correlation between the Shannon length (as well as the second-order Renyi length) and the standard deviation. Finally, the application to the most popular quantum-mechanical prototype system, the harmonic oscillator, is discussed and some relevant asymptotical open issues related to the entropic moments mentioned previously are posed.Comment: 16 pages, 4 figures. Journal of Computational and Applied Mathematics (2009), doi:10.1016/j.cam.2009.09.04

A simple method for the evaluation of the information content and complexity in atoms. A proposal for scalability

We present a very simple method for the calculation of Shannon, Fisher, Onicescu and Tsallis entropies in atoms, as well as SDL and LMC complexity measures, as functions of the atomic number Z. Fractional occupation probabilities of electrons in atomic orbitals are employed, instead of the more complicated continuous electron probability densities in position and momentum spaces, used so far in the literature. Our main conclusions are compatible with the results of more sophisticated approaches and correlate fairly with experimental data. We obtain for the Tsallis entropic index the value q=1.031, which shows that atoms are very close to extensivity. A practical way towards scalability of the quantification of complexity for systems with more components than the atom is indicated. We also discuss the issue if the complexity of the electronic structure of atoms increases with Z. A Pair of Order-Disorder Indices (PODI), which can be introduced for any quantum many-body system, is evaluated in atoms. We conclude that "atoms are ordered systems, which do not grow in complexity as Z increases".Comment: Preprint, 25 pages, 15 figures, 1 Tabl

Configuration Complexities of Hydrogenic Atoms

The Fisher-Shannon and Cramer-Rao information measures, and the LMC-like or shape complexity (i.e., the disequilibrium times the Shannon entropic power) of hydrogenic stationary states are investigated in both position and momentum spaces. First, it is shown that not only the Fisher information and the variance (then, the Cramer-Rao measure) but also the disequilibrium associated to the quantum-mechanical probability density can be explicitly expressed in terms of the three quantum numbers (n, l, m) of the corresponding state. Second, the three composite measures mentioned above are analytically, numerically and physically discussed for both ground and excited states. It is observed, in particular, that these configuration complexities do not depend on the nuclear charge Z. Moreover, the Fisher-Shannon measure is shown to quadratically depend on the principal quantum number n. Finally, sharp upper bounds to the Fisher-Shannon measure and the shape complexity of a general hydrogenic orbital are given in terms of the quantum numbers.Comment: 22 pages, 7 figures, accepted i

Net Fisher information measure versus ionization potential and dipole polarizability in atoms

The net Fisher information measure, defined as the product of position and momentum Fisher information measures and derived from the non-relativistic Hartree-Fock wave functions for atoms with Z=1-102, is found to correlate well with the inverse of the experimental ionization potential. Strong direct correlations of the net Fisher information are also reported for the static dipole polarizability of atoms with Z=1-88. The complexity measure, defined as the ratio of the net Onicescu information measure and net Fisher information, exhibits clearly marked regions corresponding to the periodicity of the atomic shell structure. The reported correlations highlight the need for using the net information measures in addition to either the position or momentum space analogues. With reference to the correlation of the experimental properties considered here, the net Fisher information measure is found to be superior than the net Shannon information entropy.Comment: 16 pages, 6 figure