Activin has direct long-range signalling activity and can form a concentration gradient by diffusion

AbstractBackground: Activin has strong mesoderm-inducing properties in the early Xenopus embryo, and has a long-range signalling activity that activates genes in cells distant from a source in a concentration-dependent way. It has not yet been established what mechanism of signal transmission accounts for this and other examples of long-range signalling in vertebrates. Nor is it known whether activin itself acts on distant cells or whether other kinds of molecules are used for long-range signalling. Here we have used a well characterised model system, involving animal caps of Xenopus blastulae treated with activin or transforming growth factor β, to analyze some fundamental properties of long-range signalling and of the formation of a morphogen gradient.Results: We find that cells distant from the source of activin require functional activin receptors to activate Xbrachyury, a result suggesting that activin itself acts directly on distant cells and that other secondary signalling molecules are not required. We also find that the signals can be transmitted across a tissue that cannot respond to it; this argues against a relay process. We provide direct evidence that labelled activin forms a concentration gradient emanating from its source and extending to the distant cells that express Xbrachyury. Lastly, we show that there is no inherent polarity in the responding tissue that influences either the direction or rate of signalling.Conclusions: The long-range signalling mechanism by which activin initiates the transcription of genes in a concentration-dependent manner depends on a process of rapid diffusion and the establishment of an activin gradient across the tissue. It cannot be explained by a relay or wave propagation mechanism. Activin itself is the signalling molecule to which distant cells respond

Exchange Monte Carlo Method and Application to Spin Glass Simulations

We propose an efficient Monte Carlo algorithm for simulating a ``hardly-relaxing" system, in which many replicas with different temperatures are simultaneously simulated and a virtual process exchanging configurations of these replica is introduced. This exchange process is expected to let the system at low temperatures escape from a local minimum. By using this algorithm the three-dimensional $\pm J$ Ising spin glass model is studied. The ergodicity time in this method is found much smaller than that of the multi-canonical method. In particular the time correlation function almost follows an exponential decay whose relaxation time is comparable to the ergodicity time at low temperatures. It suggests that the system relaxes very rapidly through the exchange process even in the low temperature phase.Comment: 10 pages + uuencoded 5 Postscript figures, REVTe

A new array concept using spatially distributed subarrays for unambiguous GNSS interference mitigation in automotive applications

Radio frequency interference (RFI) poses a severe problem for conventional GNSS receivers. Even low powered RFI can block the reception of satellite signals and prevent a position determination. Antenna array systems have been proven suitable to counteract RFI by incorporating spatial processing techniques. The large size of uniform rectangular arrays (URA) with half-wave antenna spacing impedes an installation in cars intended for the consumer mass market, where a hidden installation is a strict requirement by industry and customers. This paper introduces a new approach, where a conventional URA is split into distributed linear subarrays with the aim to reduce their footprint but to maintain the possibility of spatial processing. The achievable gain in robustness against RFI is evaluated. Drawbacks in terms of manifold ambiguities and their consequences for spatial processing techniques are also discussed. Furthermore, the accuracy of positioning results derived from a field test is put into context with a single antenna receiver

Developing User‐Friendly Habitat Suitability Tools from Regional Stream Fish Survey Data

We developed user‐friendly fish habitat suitability tools (plots) for fishery managers in Michigan; these tools are based on driving habitat variables and fish population estimates for several hundred stream sites throughout the state. We generated contour plots to show patterns in fish biomass for over 60 common species (and for 120 species grouped at the family level) in relation to axes of catchment area and low‐flow yield (90% exceedance flow divided by catchment area) and also in relation to axes of mean and weekly range of July temperatures. The plots showed distinct patterns in fish habitat suitability at each level of biological organization studied and were useful for quantitatively comparing river sites. We demonstrate how these plots can be used to support stream management, and we provide examples pertaining to resource assessment, trout stocking, angling regulations, chemical reclamation of marginal trout streams, indicator species, instream flow protection, and habitat restoration. These straightforward and effective tools are electronically available so that managers can easily access and incorporate them into decision protocols and presentations.Received April 9, 2010; accepted November 8, 2010Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/141005/1/nafm0041.pd

Large and continuous tuning of the work function of indium tin oxide using simple mixing of self assembled monolayers

Self assembled monolayers SAMs have been extensively investigated in opto electronic applications, such as organic light emitting diodes OLEDs . SAMs are used to tune the energy level alignment by allowing Ohmic contact at the interface between electrodes and organic semiconductors. To achieve the required energy level alignment and modify the electrode work function, molecules carrying a permanent dipole are chemically grafted at the electrode surface. Typically, the electrodes are modified by choosing one specific molecule carrying the appropriate dipole to achieve the desired discrete work function value. In this contribution, we propose a simple way to continuously tune the work function over almost 1 amp; 8201;eV and demonstrate this on the most commonly used transparent electrode, namely, indium tin oxide ITO . The continuous tuning is achieved by selecting two molecules able to form SAMs, each carrying a different permanent dipole. Solutions comprising the molecules are mixed at different relative concentrations and deposited on the ITO surface. The composition of the resulting densely packed mixed SAM is directly related to the composition of the initial mixing in solution. The effect of the SAM on the ITO electronic landscape was analyzed by various surface sensitive measurements. Furthermore, the differently functionalized transparent electrodes have been integrated in prototypical OLEDs. Through electrical characterization, we confirm the ability to continuously tune the carrier injection and thereby improve the luminescenc

Investigating organic aerosol loading in the remote marine environment

Aerosol loading in the marine environment is investigated using aerosol composition measurements from several research ship campaigns (ICEALOT, MAP, RHaMBLe, VOCALS and OOMPH), observations of total AOD column from satellite (MODIS) and ship-based instruments (Maritime Aerosol Network, MAN), and a global chemical transport model (GEOS-Chem). This work represents the most comprehensive evaluation of oceanic OM emission inventories to date, by employing aerosol composition measurements obtained from campaigns with wide spatial and temporal coverage. The model underestimates AOD over the remote ocean on average by 0.02 (21 %), compared to satellite observations, but provides an unbiased simulation of ground-based Maritime Aerosol Network (MAN) observations. Comparison with cruise data demonstrates that the GEOS-Chem simulation of marine sulfate, with the mean observed values ranging between 0.22 μg m−3 and 1.34 μg m−3, is generally unbiased, however surface organic matter (OM) concentrations, with the mean observed concentrations between 0.07 μg m−3 and 0.77 μg m−3, are underestimated by a factor of 2–5 for the standard model run. Addition of a sub-micron marine OM source of approximately 9 TgC yr−1 brings the model into agreement with the ship-based measurements, however this additional OM source does not explain the model underestimate of marine AOD. The model underestimate of marine AOD is therefore likely the result of a combination of satellite retrieval bias and a missing marine aerosol source (which exhibits a different spatial pattern than existing aerosol in the model)

Comparison between Suitable Priors for Additive Bayesian Networks

Additive Bayesian networks are types of graphical models that extend the usual Bayesian generalized linear model to multiple dependent variables through the factorisation of the joint probability distribution of the underlying variables. When fitting an ABN model, the choice of the prior of the parameters is of crucial importance. If an inadequate prior - like a too weakly informative one - is used, data separation and data sparsity lead to issues in the model selection process. In this work a simulation study between two weakly and a strongly informative priors is presented. As weakly informative prior we use a zero mean Gaussian prior with a large variance, currently implemented in the R-package abn. The second prior belongs to the Student's t-distribution, specifically designed for logistic regressions and, finally, the strongly informative prior is again Gaussian with mean equal to true parameter value and a small variance. We compare the impact of these priors on the accuracy of the learned additive Bayesian network in function of different parameters. We create a simulation study to illustrate Lindley's paradox based on the prior choice. We then conclude by highlighting the good performance of the informative Student's t-prior and the limited impact of the Lindley's paradox. Finally, suggestions for further developments are provided.Comment: 8 pages, 4 figure