Universal architecture of bacterial chemoreceptor arrays

Chemoreceptors are key components of the high-performance signal transduction system that controls bacterial chemotaxis. Chemoreceptors are typically localized in a cluster at the cell pole, where interactions among the receptors in the cluster are thought to contribute to the high sensitivity, wide dynamic range, and precise adaptation of the signaling system. Previous structural and genomic studies have produced conflicting models, however, for the arrangement of the chemoreceptors in the clusters. Using whole-cell electron cryo-tomography, here we show that chemoreceptors of different classes and in many different species representing several major bacterial phyla are all arranged into a highly conserved, 12-nm hexagonal array consistent with the proposed “trimer of dimers” organization. The various observed lengths of the receptors confirm current models for the methylation, flexible bundle, signaling, and linker sub-domains in vivo. Our results suggest that the basic mechanism and function of receptor clustering is universal among bacterial species and was thus conserved during evolution

A Minimal Model of Metabolism Based Chemotaxis

Since the pioneering work by Julius Adler in the 1960's, bacterial chemotaxis has been predominantly studied as metabolism-independent. All available simulation models of bacterial chemotaxis endorse this assumption. Recent studies have shown, however, that many metabolism-dependent chemotactic patterns occur in bacteria. We hereby present the simplest artificial protocell model capable of performing metabolism-based chemotaxis. The model serves as a proof of concept to show how even the simplest metabolism can sustain chemotactic patterns of varying sophistication. It also reproduces a set of phenomena that have recently attracted attention on bacterial chemotaxis and provides insights about alternative mechanisms that could instantiate them. We conclude that relaxing the metabolism-independent assumption provides important theoretical advances, forces us to rethink some established pre-conceptions and may help us better understand unexplored and poorly understood aspects of bacterial chemotaxis

Finite element based electrostatic-structural coupled analysis with automated mesh morphing

A co-simulation tool based on finite element principles has been developed to solve coupled electrostatic-structural problems. An automated mesh morphing algorithm has been employed to update the field mesh after structural deformation. The co-simulation tool has been successfully applied to the hysteric behavior of a MEMS switch

The Effects of Slippage and Diffraction in Long-Wavelength Operation of a Free-Electron Laser

The Free-Electron Laser user facility FELIX produces picosecond optical pulses in the wavelength range of 5-110 mu m. The proposed installation of a new undulator with a larger magnetic period would allow extension towards considerably longer wavelengths. This would result in the production of extremely short, far-infrared pulses, with a duration of a single optical period or even less. In order to investigate the pulse propagation for free-electron lasers operating in the long wavelength limit, a three-dimensional simulation code was developed. Using the FELIX parameters, with the addition of a long-period undulator, the effects of slippage, diffraction losses, changes in the filling factor, as well as the effects of the optical cavity geometry were studied for wavelengths up to 300 mu m, with electron pulses in the ps regime. It is shown that slippage effects are less restrictive for long wavelength operation than the increasing losses due to optical beam beam action