Detection of artificially injected signals in the cosmic microwave background

Honors (Bachelor's)PhysicsUniversity of Michiganhttp://deepblue.lib.umich.edu/bitstream/2027.42/91786/1/sophz.pd

Effective Strategies for Integrating STEM Education into Chinese Language Classroom

1. What is STEM? -How can it be integrated into the current language curriculum? 2. Why STEM? -Trend of offering the Mandarin course at K-12 schools 3. Chinese Curriculum & STEM-focused topics -The STEM-focused topics incorporated at IMSA 4. Teaching strategies -Lesson design, use of authentic materials, activitie

Fitness of antimicrobial-resistant Campylobacter and Salmonella

Campylobacter and Salmonella are the most commonly reported bacterial causes of human foodborne infections, and increasing proportions of these pathogens become resistant to medically important antimicrobial agents, imposing a burden on public health. Acquisition of resistance to antibiotics affects the adaptation and evolution of Salmonella and Campylobacter in various environments. Many resistance-conferring mutations entail a biological fitness cost, while others (e.g. fluoroquinolone resistance in Campylobacter) have no cost or even enhanced fitness. In Salmonella, the fitness disadvantage due to antimicrobial resistance can be restored by acquired compensatory mutations, which occur both in vitro and in vivo. The compensated or even enhanced fitness associated with antibiotic resistance may facilitate the spread and persistence of antimicrobial-resistant Salmonella and Campylobacter in the absence of selection pressure, creating a significant barrier for controlling antibiotic-resistant foodborne pathogens

Upper and Lower Bounds on the Smoothed Complexity of the Simplex Method

The simplex method for linear programming is known to be highly efficient in practice, and understanding its performance from a theoretical perspective is an active research topic. The framework of smoothed analysis, first introduced by Spielman and Teng (JACM '04) for this purpose, defines the smoothed complexity of solving a linear program with $d$ variables and $n$ constraints as the expected running time when Gaussian noise of variance $\sigma^2$ is added to the LP data. We prove that the smoothed complexity of the simplex method is $O(\sigma^{-3/2} d^{13/4}\log^{7/4} n)$, improving the dependence on $1/\sigma$ compared to the previous bound of $O(\sigma^{-2} d^2\sqrt{\log n})$. We accomplish this through a new analysis of the \emph{shadow bound}, key to earlier analyses as well. Illustrating the power of our new method, we use our method to prove a nearly tight upper bound on the smoothed complexity of two-dimensional polygons. We also establish the first non-trivial lower bound on the smoothed complexity of the simplex method, proving that the \emph{shadow vertex simplex method} requires at least $\Omega \Big(\min \big(\sigma^{-1/2} d^{-1/2}\log^{-1/4} d,2^d \big) \Big)$ pivot steps with high probability. A key part of our analysis is a new variation on the extended formulation for the regular $2^k$-gon. We end with a numerical experiment that suggests this analysis could be further improved.Comment: 41 pages, 5 figure

Rorc restrains the potency of ST2+ regulatory T cells in ameliorating intestinal graft-versus-host disease

Soluble stimulation-2 (ST2) is increased during graft-versus-host disease (GVHD), while Tregs that express ST2 prevent GVHD through unknown mechanisms. Transplantation of Foxp3- T cells and Tregs that were collected and sorted from different Foxp3 reporter mice indicated that in mice that developed GVHD, ST2+ Tregs were thymus derived and predominantly localized to the intestine. ST2-/- Treg transplantation was associated with reduced total intestinal Treg frequency and activation. ST2-/- versus WT intestinal Treg transcriptomes showed decreased Treg functional markers and, reciprocally, increased Rorc expression. Rorc-/- T cells transplantation enhanced the frequency and function of intestinal ST2+ Tregs and reduced GVHD through decreased gut-infiltrating soluble ST2-producing type 1 and increased IL-4/IL-10-producing type 2 T cells. Cotransfer of ST2+ Tregs sorted from Rorc-/- mice with WT CD25-depleted T cells decreased GVHD severity and mortality, increased intestinal ST2+KLRG1+ Tregs, and decreased type 1 T cells after transplantation, indicating an intrinsic mechanism. Ex vivo IL-33-stimulated Tregs (TregIL-33) expressed higher amphiregulin and displayed better immunosuppression, and adoptive transfer prevented GVHD better than control Tregs or TregIL-33 cultured with IL-23/IL-17. Amphiregulin blockade by neutralizing antibody in vivo abolished the protective effect of TregIL-33. Our data show that inverse expression of ST2 and RORγt in intestinal Tregs determines GVHD and that TregIL-33 has potential as a cellular therapy avenue for preventing GVHD

Sylow pp-groups of polynomial permutations on the integers mod pnp^n

We describe the Sylow $p$-groups of the group of polynomial permutations of the integers mod $p^n$

Training biases in machine learning for the analytic continuation of quantum many-body Green's functions

We address the problem of analytic continuation of imaginary-frequency Green's functions, which is crucial in many-body physics, using machine learning based on a multi-level residual neural network. We specifically address potential biases that can be introduced due to the use of artificially created spectral functions that are employed to train the neural network. We also implement an uncertainty estimation of the predicted spectral function, based on Monte Carlo dropout, which allows to identify frequency regions where the prediction might not be accurate, and we study the effect of noise, in particular also for situations where the noise level during training is different from that in the actual data. Our analysis demonstrates that this method can indeed achieve a high quality of prediction, comparable or better than the widely used maximum entropy method, but that further improvement is currently limited by the lack of true data that can be used for training. We also benchmark our approach by applying it to the case of SrVO$_3$, where an accurate spectral function has been obtained from dynamical mean-field theory using a solver that works directly on the real frequency axis

Setting up local travel plan groups : the future of workplace travel planning in urban conurbations? Examples from London, UK.

Any group of organisations that comes together to share resources and ideas for developing and implementing a travel plan (site based Transportation Demand Management plan, known as a Travel Plan in the UK) in their local area could be described as a local travel plan group. Whilst the concept is not new for workplace travel planning in North America, recently several new variants have been established in the UK. This paper reviews and sets out a typology of local travel plan groups, including development zones, area based groups, Transportation Management Associations and Business Improvement Districts. It then highlights the case of London, where, perhaps uniquely, at least one example of each type of group is present. One new example is then examined in more detail to illustrate some of the challenges in setting up a local travel plan group and the way in which they may develop in the future to providing a framework for involving businesses in local transport improvement decisions. Finally, the main characteristics of the London groups and how they differ from their North American predecessors are briefly explored

Les facteurs institutionnels associés aux infections et à la mortalité COVID-19 en centre d’hébergement pendant la première vague : une analyse de 17 CHSLD à Montréal

Contexte : Partout dans le monde, la population âgée en hébergement a été la plus lourdement affectée par la pandémie de COVID-19, du point de vue des infections et des décès. Or, ces mêmes personnes ont été exclues d’une grande partie de la littérature scientifique. Ce mémoire décrit l’évolution des éclosions dans 17 CHSLD publics de Montréal, dont certains ont été fortement atteints alors que d’autres ont été épargnés pendant la première vague (23 février au 11 juillet 2020), en cherchant à élucider les facteurs associés à l’incidence et à la létalité de la COVID-19. Méthodes : Des données institutionnelles ont été recueillies sur les 17 CHSLD du CIUSSS Centre-Sud-de-l'Île-de-Montréal et des données individuelles ont été obtenues grâce à une révision des 1197 dossiers de patients atteints de la COVID-19 en première vague. Dans l’analyse ARIMA, des séries chronologiques ont été construites pour les cas incidents bruts chez les résidents en CHSLD et dans la ville de Montréal, afin d’évaluer l’impact de deux interventions, soit le port généralisé du masque de procédure et le dépistage élargi des résidents et des employés. Dans l’analyse des infections par CHSLD, des modèles de régression de type binomial négatif ont été construits pour estimer l’effet des facteurs de risque institutionnels sur l’incidence de la COVID-19 chez les résidents. Dans l’analyse de surmortalité, les excès de décès durant la période de février à juillet ont été évalués avec des tests t et des ratios de taux entre l’année 2020 et la moyenne des quatre années précédentes (2016-2019). Enfin, pour l’analyse de mortalité dans la cohorte rétrospective de résidents atteints de la COVID-19, des modèles de régression logistique à effets mixtes ont été utilisés pour évaluer les facteurs institutionnels et les traitements associés à la mortalité dans les 30 jours suivant un diagnostic de COVID-19, en contrôlant pour les facteurs de risque individuels. Résultats : Dans l’analyse de série chronologique ARIMA, chaque augmentation d’un cas incident quotidien par 100 000 à Montréal était associée avec une augmentation de 0,051 (IC95% 0,044 à 0,058) fois l’incidence quotidienne en CHSLD la semaine suivante, chez les résidents à risque. De plus, en contrôlant pour la transmission communautaire, chaque palier d’intensification du dépistage était associé à une diminution de l’incidence de 11,8 fois (IC95% -15,1 à -8,5) dans les deux semaines suivantes, chez les résidents à risque. Dans le modèle explicatif des infections au niveau des CHSLD, la pénurie sévère d’infirmières auxiliaires (IRR 3,2; IC95% 1,4 à 7,2), la mauvaise performance aux audits ministériels (IRR 3,0; IC95% 1,1 à 7,8) et un score moyen d’autonomie plus faible (IRR 2,1; IC95% 1,4 à 3,1) étaient associés au taux d’incidence par centre. En revanche, la présence de zone chaude dédiée aux patients COVID-19 (IRR; 0,56 IC95% 0,34 à 0,92) était protectrice. Pour l’ensemble des 17 CHSLD avec 2670 lits, l’excès de décès de février à juillet 2020 était de 428 (IC95% 409 à 447). Comparé aux quatre années précédentes, il y a eu plus que le double (IRR 2,3; IC95% 2,1 à 2,5) de décès en 2020 pendant la période de la première vague. Pour 12 CHSLD qui ont vécu des éclosions importantes, les excès de décès en 2020 variaient de 5,2 à 41,9 décès par 100 lits, avec une surmortalité par rapport aux années précédentes allant de 1,9 à 3,8. Selon l’analyse de mortalité dans la cohorte rétrospective, les facteurs individuels associés à la mortalité dans les 30 jours suivant le diagnostic de COVID-19 étaient l’âge (OR 1,58; IC95% 1,35 à 1,85 par tranche additionnelle de 10 ans), le sexe masculin (OR 2,37; IC95% 1,70 à 3,32), la perte d’autonomie (OR 1,12; IC95% 1,05 à 1,20 pour chaque augmentation d’un point à l’Iso-SMAF), le niveau d’intervention médicale C (OR 3,43; IC95% 1,57 à 7,51) et D (OR 3,61; IC95% 1,47 à 8,89) comparé au niveau A, ainsi que les diagnostics de trouble neurocognitif (OR 1,54; IC95% 1,04 à 2,29) et d’insuffisance cardiaque (OR 2,36; IC95% 1,45 à 3,85). Le traitement avec une thromboprophylaxie (OR 0,42; IC95% 0,29 à 0,63) et l’infection tardive après le 20 avril 2020 (OR 0,46; IC95% 0,33 à 0,65) étaient associés à la survie à 30 jours. Pour les facteurs institutionnels, la pénurie sévère de 25% ou plus d’infirmières auxiliaires (OR 1,91; IC95% 1,14 à 3,21 par rapport à une pénurie légère < 15%) et la taille du centre (OR 1,77; IC95% 1,17 à 2,68 pour chaque 100 lits additionnels) étaient associés au décès dans les 30 jours. Conclusion : Ce mémoire a relevé plusieurs facteurs de risque modifiables au niveau institutionnel associés aux infections et aux décès COVID-19, dont le dépistage, l’adhérence aux directives ministérielles de prévention et contrôle des infections, la pénurie d’infirmières auxiliaires et le nombre de lits par centre. Ces enjeux cruciaux devront être au cœur des futures orientations et politiques touchant les centres d’hébergement, pour cette pandémie et au-delà.Background: In the midst of the COVID-19 pandemic, the population of long-term care residents has been the hardest hit by infections and deaths all around the world. Yet, these same individuals have been excluded from vast segments of the scientific literature. This thesis describes the evolution of outbreaks in 17 public long-term care facilities (“CHSLD”) in Montreal, some of which were severely affected and others were relatively spared during the first wave (February 23 to July 12, 2020), in search of risk factors associated with COVID-19 cases and deaths. Methods: Institutional-level data on the 17 CHSLDs were collected from relevant administrative departments within the establishment (CIUSSS Centre-Sud-de-l'Île-de-Montréal), and individual-level data was obtained from the chart reviews of 1,197 first wave COVID-19 patients. For the ARIMA analysis, time series were built using the crude incidence rates among CHSLD residents and in the city of Montreal, in order to assess the impact of two interventions – introduction of the mask-wearing policy and generalized testing among residents and staff. For the analysis of facility-level infection rates, negative binomial regression models were built to estimate the effects of several institutional risk factors on incident cases. As for the excess mortality analysis, excess death and relative mortality were estimated using one-sample t-tests and rate ratio tests to compare 2020 deaths with average deaths in the previous four years (2016-2019), for the period of February to July. Lastly, for the survival analysis of the retrospective cohort, mixed-effects logistic regression models were used to identify institutional factors and treatments associated with 30-day mortality after a COVID-19 diagnosis, while controlling for individual risk factors. Results: In the ARIMA time series analysis, each additional case per 100,000 per day in Montreal was associated with a 0.051 (95%CI 0.044 to 0.058) increase in CHSLD daily incidence a week later, among at-risk residents. In addition, while controlling for community transmission, increased testing intensity was associated with a 11.8 (95%CI -15.1 to -8.5) decrease in CHSLD daily incidence two weeks later, among at-risk residents. In the negative binomial regression model for facility-level COVID-19 infections, poor performance on ministry audits (IRR 3.0 95%CI 1.1 to 7.8), severe shortage of auxiliary nurses (IRR 3.2 95%CI 1.4 to 7.2) and lower average autonomy scores (IRR 2.1 95%CI 1.4 to 3.1) were associated with incident cases, while the presence of a COVID-19 unit or “red zone” (IRR 0.56 95%CI 0.34 to 0.92) was inversely associated with infections. For the 17 CHSLDs, excess deaths from February to July 2020 was 428 (95%CI 409 to 447). Compared to the same period in the previous four years, 2020 mortality during the first wave was 2.3 (IRR 95%CI 2.1 to 2.5) times higher. For a subset of 12 facilities that experienced substantial outbreaks, excess deaths in 2020 varied from 5.2 to 41.9 deaths per 100 beds, with significant excess mortality between 1.9 and 3.8, relative to previous years. According to the mortality analysis by mixed-effects logistic regression, individual risk factors associated with 30-day mortality after a COVID-19 diagnosis were age (OR 1.58 95%CI 1.35 to 1.85 per additional 10 years), male sex (OR 2.37 95%CI 1.70 to 3.32), loss of autonomy (OR 1.12 95%CI 1.05 to 1.20 per unit increase of Iso-SMAF profile), C-level (OR 3.43 95%CI 1.57 to 7.51) or D-level (OR 3.61 95%CI 1.47 to 8.89) medical intervention compared to A-level, as well as being diagnosed with a neurocognitive disorder (OR 1.54 95%CI 1.04 to 2.29) or congestive heart failure (OR 2.36 95%CI 1.45 to 3.85). Treatment with thromboprophylaxis (OR 0.42 95%CI 0.29 to 0.63) and diagnosis after April 20, 2020 (OR 0.46 95%CI 0.33 to 0.65) were associated with 30-day survival. As for institutional risk factors, severe shortage of auxiliary nurses (OR 1.91 95%CI 1.14 to 3.21) and facility size (OR 1.77 95%CI 1.17 to 2.68 per 100 beds) increased the odds of dying within 30 days. Conclusion: This study identified several modifiable risk factors at the institutional level associated with COVID-19 infections and deaths, including testing strategies, adherence to ministry directives for infection prevention, auxiliary nurse shortages, and number of beds per facility. Future policies and regulations targeting long-term care facilities will need to tackle these critical issues, for this pandemic and beyond