Strategies for Searching Video Content with Text Queries or Video Examples

The large number of user-generated videos uploaded on to the Internet everyday has led to many commercial video search engines, which mainly rely on text metadata for search. However, metadata is often lacking for user-generated videos, thus these videos are unsearchable by current search engines. Therefore, content-based video retrieval (CBVR) tackles this metadata-scarcity problem by directly analyzing the visual and audio streams of each video. CBVR encompasses multiple research topics, including low-level feature design, feature fusion, semantic detector training and video search/reranking. We present novel strategies in these topics to enhance CBVR in both accuracy and speed under different query inputs, including pure textual queries and query by video examples. Our proposed strategies have been incorporated into our submission for the TRECVID 2014 Multimedia Event Detection evaluation, where our system outperformed other submissions in both text queries and video example queries, thus demonstrating the effectiveness of our proposed approaches

Laziness, Barren Plateau, and Noise in Machine Learning

We define \emph{laziness} to describe a large suppression of variational parameter updates for neural networks, classical or quantum. In the quantum case, the suppression is exponential in the number of qubits for randomized variational quantum circuits. We discuss the difference between laziness and \emph{barren plateau} in quantum machine learning created by quantum physicists in \cite{mcclean2018barren} for the flatness of the loss function landscape during gradient descent. We address a novel theoretical understanding of those two phenomena in light of the theory of neural tangent kernels. For noiseless quantum circuits, without the measurement noise, the loss function landscape is complicated in the overparametrized regime with a large number of trainable variational angles. Instead, around a random starting point in optimization, there are large numbers of local minima that are good enough and could minimize the mean square loss function, where we still have quantum laziness, but we do not have barren plateaus. However, the complicated landscape is not visible within a limited number of iterations, and low precision in quantum control and quantum sensing. Moreover, we look at the effect of noises during optimization by assuming intuitive noise models, and show that variational quantum algorithms are noise-resilient in the overparametrization regime. Our work precisely reformulates the quantum barren plateau statement towards a precision statement and justifies the statement in certain noise models, injects new hope toward near-term variational quantum algorithms, and provides theoretical connections toward classical machine learning. Our paper provides conceptual perspectives about quantum barren plateaus, together with discussions about the gradient descent dynamics in \cite{together}.Comment: 18 pages, 3 figure

Research on Disease Prediction Model Construction Based on Computer AI deep Learning Technology

The prediction of disease risk factors can screen vulnerable groups for effective prevention and treatment, so as to reduce their morbidity and mortality. Machine learning has a great demand for high-quality labeling information, and labeling noise in medical big data poses a great challenge to efficient disease risk warning methods. Therefore, this project intends to study the robust learning algorithm and apply it to the early warning of infectious disease risk. A dynamic truncated loss model is proposed, which combines the traditional mutual entropy implicit weight feature with the mean variation feature. It is robust to label noise. A lower bound on training loss is constructed, and a method based on sampling rate is proposed to reduce the gradient of suspected samples to reduce the influence of noise on training results. The effectiveness of this method under different types of noise was verified by using a stroke screening data set as an example. This method enables robust learning of data containing label noise

A multi-tissue single-cell expression atlas in cattle

Systematic characterization of the molecular states of cells in livestock tissues is essential for understanding the cellular and genetic mechanisms underlying economically and ecologically important physiological traits. Here, as part of the Farm Animal Genotype-Tissue Expression (FarmGTEx) project, we describe a comprehensive reference map including 1,793,854 cells from 59 bovine tissues in calves and adult cattle, spanning both sexes, which reveals intra-tissue and inter-tissue cellular heterogeneity in gene expression, transcription factor regulation and intercellular communication. Integrative analysis with genetic variants that underpin bovine monogenic and complex traits uncovers cell types of relevance, such as spermatocytes, responsible for sperm motility and excitatory neurons for milk fat yield. Comparative analysis reveals similarities in gene expression between cattle and humans, allowing for the detection of relevant cell types to study human complex phenotypes. This Cattle Cell Atlas will serve as a key resource for cattle genetics and genomics, selective breeding and comparative biology

A nomogram based on collagen signature for predicting the immunoscore in colorectal cancer

ObjectivesThe Immunoscore can categorize patients into high- and low-risk groups for prognostication in colorectal cancer (CRC). Collagen plays an important role in immunomodulatory functions in the tumor microenvironment (TME). However, the correlation between collagen and the Immunoscore in the TME is unclear. This study aimed to construct a collagen signature to illuminate the relationship between collagen structure and Immunoscore.MethodsA total of 327 consecutive patients with stage I-III stage CRC were included in a training cohort. The fully quantitative collagen features were extracted at the tumor center and invasive margin of the specimens using multiphoton imaging. LASSO regression was applied to construct the collagen signature. The association of the collagen signature with Immunoscore was assessed. A collagen nomogram was developed by incorporating the collagen signature and clinicopathological predictors after multivariable logistic regression. The performance of the collagen nomogram was evaluated via calibration, discrimination, and clinical usefulness and then tested in an independent validation cohort. The prognostic values of the collagen nomogram were assessed using Cox regression and the Kaplan−Meier method.ResultsThe collagen signature was constructed based on 16 collagen features, which included 6 collagen features from the tumor center and 10 collagen features from the invasive margin. Patients with a high collagen signature were more likely to show a low Immunoscore (Lo IS) in both cohorts (P<0.001). A collagen nomogram integrating the collagen signature and clinicopathological predictors was developed. The collagen nomogram yielded satisfactory discrimination and calibration, with an AUC of 0.925 (95% CI: 0.895-0.956) in the training cohort and 0.911 (95% CI: 0.872-0.949) in the validation cohort. Decision curve analysis confirmed that the collagen nomogram was clinically useful. Furthermore, the collagen nomogram-predicted subgroup was significantly associated with prognosis. Moreover, patients with a low-probability Lo IS, rather than a high-probability Lo IS, could benefit from chemotherapy in high-risk stage II and stage III CRC patients.ConclusionsThe collagen signature is significantly associated with the Immunoscore in the TME, and the collagen nomogram has the potential to individualize the prediction of the Immunoscore and identify CRC patients who could benefit from adjuvant chemotherapy

Integrating large-scale meta-GWAS and PigGTEx resources to decipher the genetic basis of 232 complex traits in pigs

Understanding the molecular and cellular mechanisms underlying complex traits in pigs is crucial for enhancing genetic gain via artificial selection and utilizing pigs as models for human disease and biology. Here, we conducted comprehensive genome-wide association studies (GWAS) followed by a cross-breed meta-analysis for 232 complex traits and a within-breed meta-analysis for 12 traits, using 28.3 million imputed sequence variants in 70 328 animals across 14 pig breeds. We identified 6878 quantitative trait loci (QTL) for 139 complex traits. Leveraging the Pig Genotype-Tissue Expression resource, we systematically investigated the biological context and regulatory mechanisms behind these trait-QTLs, ultimately prioritizing 14 829 variant-gene-tissue-trait regulatory circuits. For instance, rs344053754 regulates UGT2B31 expression in the liver and intestines, potentially by modulating enhancer activity, ultimately influencing litter weight at weaning in pigs. Furthermore, we observed conservation of certain genetic and regulatory mechanisms underlying complex traits between humans and pigs. Overall, our cross-breed meta-GWAS in pigs provides invaluable resources and novel insights into the genetic regulatory and evolutionary mechanisms of complex traits in mammals.</p

A compendium of genetic regulatory effects across pig tissues

The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been established to develop a public resource of genetic regulatory variants in livestock, which is essential for linking genetic polymorphisms to variation in phenotypes, helping fundamental biological discovery and exploitation in animal breeding and human biomedicine. Here we show results from the pilot phase of PigGTEx by processing 5,457 RNA-sequencing and 1,602 whole-genome sequencing samples passing quality control from pigs. We build a pig genotype imputation panel and associate millions of genetic variants with five types of transcriptomic phenotypes in 34 tissues. We evaluate tissue specificity of regulatory effects and elucidate molecular mechanisms of their action using multi-omics data. Leveraging this resource, we decipher regulatory mechanisms underlying 207 pig complex phenotypes and demonstrate the similarity of pigs to humans in gene expression and the genetic regulation behind complex phenotypes, supporting the importance of pigs as a human biomedical model.</p

Laziness, barren plateau, and noises in machine learning

We define laziness to describe a large suppression of variational parameter updates for neural networks, classical or quantum. In the quantum case, the suppression is exponential in the number of qubits for randomized variational quantum circuits. We discuss the difference between laziness and barren plateau in quantum machine learning created by quantum physicists in McClean et al (2018 Nat. Commun.9 1–6) for the flatness of the loss function landscape during gradient descent. We address a novel theoretical understanding of those two phenomena in light of the theory of neural tangent kernels. For noiseless quantum circuits, without the measurement noise, the loss function landscape is complicated in the overparametrized regime with a large number of trainable variational angles. Instead, around a random starting point in optimization, there are large numbers of local minima that are good enough and could minimize the mean square loss function, where we still have quantum laziness, but we do not have barren plateaus. However, the complicated landscape is not visible within a limited number of iterations, and low precision in quantum control and quantum sensing. Moreover, we look at the effect of noises during optimization by assuming intuitive noise models, and show that variational quantum algorithms are noise-resilient in the overparametrization regime. Our work precisely reformulates the quantum barren plateau statement towards a precision statement and justifies the statement in certain noise models, injects new hope toward near-term variational quantum algorithms, and provides theoretical connections toward classical machine learning. Our paper provides conceptual perspectives about quantum barren plateaus, together with discussions about the gradient descent dynamics in Liu et al (2023 Phys. Rev. Lett.130 150601)

Quantifying the Synergy Between Industrial Structure Optimization, Ecological Environment Management, and Socio-Economic Development

In the context of the new developmental philosophy, this study aimed to address the bottleneck of regional sustainable development; it constructs a three-system evaluation indicator system for Industrial Structure Optimization (ISO), Ecological Environment Management (EEM), and Socio-economic Development (SED), based on panel data from 20 cities in the Western Taiwan Straits Economic Zone between 2011 and 2023. To reveal how the synergistic development of the three subsystems in different domains can achieve sustainable development through their interactions and to analyze the dynamic patterns of the three subsystems, this study employed the panel vector autoregression (PVAR) model to examine the interactions between subsystems. Additionally, drawing on the framework of evolutionary economics, the study quantified the temporal evolution and spatial characteristics of the coupling coordination level among the three subsystems based on the results of the degree of coupling coordination model. The results indicate the following: (1) ISO shows a significant upward trend, EEM slightly declines, and SED experiences minor fluctuations before accelerating. (2) ISO, EEM, and SED exhibited self-reinforcing effects. (3) The degree of coupling, coordination, and coupling coordination all exhibit a trend of &ldquo;fluctuating and increasing initially, followed by steady growth&rdquo;. The spatial patterns of the degree of coupling, coordination, and coupling coordination have shifted from &ldquo;decentralized&rdquo; to &ldquo;centralized&rdquo;, with clear signs of synergistic development. (4) The difference in the degree of coupling coordination along the north&ndash;south direction remained the primary factor contributing to inter-regional disparities. Regions with the higher degrees of coupling coordination were concentrated in the southeastern coastal areas, while those with the lower degrees of coupling coordination appeared in the northeastern mountainous areas and southwestern coastal areas. (5) The spatial connection in the strength of the degree of coupling coordination has gradually increased, with notable intra-provincial connections and weakened inter-city connections across the province. The study&rsquo;s results provided decision-making references for the construction of a sustainable development community