Competition of perpendicular magnetic anisotropy and exchange magnetic anisotropy in a Pt/Co/α-Cr₂O₃(0001) thin film

We investigated perpendicular magnetic anisotropy and exchange magnetic anisotropy in a Pt/Co/α-Cr₂O₃(0001) thin film grown on an α-Al₂O₃(0001) substrate. The film exhibits perpendicular magnetic anisotropy below a Co thickness of 1.2 nm at room temperature. Independent of the magnetic easy direction of the Co layer, the perpendicular exchange bias (PEB) appears in a direction perpendicular to the film below 80 K. The maximum unidirectional magnetic anisotropy energy estimated from the exchange bias field is 0.33 erg/cm², which is higher than the reported PEB strength. The perpendicular exchange bias is accompanied by the in-plane remanent magnetization and an increase in the in-plane coercivity. We speculate that the increases in the in-plane remanent magnetization and the in-plane coercivity are caused by the spin canting of Cr³⁺ in the α-Cr₂O₃(0001) layer.Yu Shiratsuchia, Hayato Noutomi, Hiroto Oikawa, Toshiaki Fujita, and Ryoichi Nakatani, Journal of Applied Physics 109, 07C101 (2011); https://doi.org/10.1063/1.3535555

Order statistics and heavy-tail distributions for planetary perturbations on Oort cloud comets

This paper tackles important aspects of comets dynamics from a statistical point of view. Existing methodology uses numerical integration for computing planetary perturbations for simulating such dynamics. This operation is highly computational. It is reasonable to wonder whenever statistical simulation of the perturbations can be much more easy to handle. The first step for answering such a question is to provide a statistical study of these perturbations in order to catch their main features. The statistical tools used are order statistics and heavy tail distributions. The study carried out indicated a general pattern exhibited by the perturbations around the orbits of the important planet. These characteristics were validated through statistical testing and a theoretical study based on Opik theory.Comment: 9 pages, 12 figures, submitted for publication in Astronomy and Astrophysic

Differential-difference system related to toroidal Lie algebra

We present a novel differential-difference system in (2+1)-dimensional space-time (one discrete, two continuum), arisen from the Bogoyavlensky's (2+1)-dimensional KdV hierarchy. Our method is based on the bilinear identity of the hierarchy, which is related to the vertex operator representation of the toroidal Lie algebra \sl_2^{tor}.Comment: 10 pages, 4 figures, pLaTeX2e, uses amsmath, amssymb, amsthm, graphic

Genome Analysis Revives a Forgotten Hybrid Crop Edo-dokoro in the Genus Dioscorea

忘れられた作物「えどどころ」の起原 --ゲノム解析が明らかにする青森県三八上北地域に残る栽培イモの歴史--. 京都大学プレスリリース. 2022-08-10.A rhizomatous Dioscorea crop “Edo-dokoro” was described in old records of Japan, but its botanical identify has not been characterized. We found that Edo-dokoro is still produced by four farmers in Tohoku-machi of Aomori Prefecture, Japan. Rhizomes of Edo-dokoro are a delicacy to the local people and are sold in the markets. Morphological characters of Edo-dokoro suggest its hybrid origin between the two species, D. tokoro and D. tenuipes. Genome analysis revealed that Edo-dokoro is likely originated by hybridization of a male D. tokoro to a female D. tenuipes, followed by a backcross with a male plant of D. tokoro. Edo-dokoro is a typical minor crop possibly maintained for more than 300 years but now almost forgotten from the public. We hypothesize that there are many such uncharacterized genetic heritages passed over generations by small scale farmers that await serious scientific investigation for future use and improvement by using modern genomics information

Genetic Alterations in Gorlin Syndrome

Gorlin syndrome (GS) is an autosomal dominant disorder that predisposes affected individuals to developmental defects and tumorigenesis, and caused mainly by heterozygous germline PTCH1 mutations. Despite exhaustive analysis, PTCH1 mutations are often unidentifiable in some patients; the failure to detect mutations is presumably because of mutations occurred in other causative genes or outside of analyzed regions of PTCH1, or copy number alterations (CNAs). In this study, we subjected a cohort of GS-affected individuals from six unrelated families to next-generation sequencing (NGS) analysis for the combined screening of causative alterations in Hedgehog signaling pathway-related genes. Specific single nucleotide variations (SNVs) of PTCH1 causing inferred amino acid changes were identified in four families (seven affected individuals), whereas CNAs within or around PTCH1 were found in two families in whom possible causative SNVs were not detected. Through a targeted resequencing of all coding exons, as well as simultaneous evaluation of copy number status using the alignment map files obtained via NGS, we found that GS phenotypes could be explained by PTCH1 mutations or deletions in all affected patients. Because it is advisable to evaluate CNAs of candidate causative genes in point mutation-negative cases, NGS methodology appears to be useful for improving molecular diagnosis through the simultaneous detection of both SNVs and CNAs in the targeted genes/regions

Nocapyrones: α- and γ-Pyrones from a Marine-Derived Nocardiopsis sp.

One new α-pyrone (nocapyrone R (1)), and three known γ-pyrones (nocapyrones B, H and L (2–4)) were isolated from the culture extract of a Nocardiopsis strain collected from marine sediment. Structures of these compounds were determined on the basis of spectroscopic data including NMR and MS. γ-Pyrones 2–4 were found to induce adiponectin production in murine ST-13 preadipocyte cells but the α-pyrone 1 had no activity. The absolute configuration of the anteiso-methyl branching in 4 was determined by HPLC comparison of a degraded product of 4 with standard samples as a 2:3 enantiomeric mixture of (R)- and (S)-isomers

Isothermal switching of perpendicular exchange bias by pulsed high magnetic field

Isothermal switching of a perpendicular exchange bias by a strong pulsed magnetic field has been investigated using a Pt/Co/α-Cr₂O₃ thin film system. The switching of the perpendicular exchange bias is accompanied by the spin reversal of interfacial uncompensated antiferromagnetic Cr spins. We have also demonstrated that the switching of the exchange bias is reversible by changing the pulsed magnetic field direction. The mechanism of the demonstrated switching is discussed from the viewpoint of the spin flop transition of the α-Cr₂O₃ layer.Yu Shiratsuchi, Kohei Wakatsu, Tetsuya Nakamura, Hiroto Oikawa, Satoru Maenou, Yasuo Narumi, Kou Tazoe, Chiharu Mitsumata, Toyohiko Kinoshita, Hiroyuki Nojiri, and Ryoichi Nakatani, Appl. Phys. Lett. 100, 262413 (2012); https://doi.org/10.1063/1.4731643

UPR Signal Activation by Luminal Sensor Domains

The unfolded protein response (UPR) is a cell-signaling system that detects the accumulation of unfolded protein within the endoplasmic reticulum (ER) and initiates a number of cellular responses to restore ER homeostasis. The presence of unfolded protein is detected by the ER-luminal sensor domains of the three UPR-transducer proteins IRE1, PERK, and ATF6, which then propagate the signal to the cytosol. In this review, we discuss the various mechanisms of action that have been proposed on how the sensor domains detect the presence of unfolded protein to activate downstream UPR signaling. © 2013 by the authors; licensee MDPI, Basel, Switzerland

Detection and in situ switching of unreversed interfacial antiferromagnetic spins in a perpendicular-exchange-biased system

By using the perpendicular-exchange-biased Pt/Co/α-Cr₂O₃ system, we provide experimental evidence that the unreversed uncompensated Cr spins exist at the Co/α-Cr₂O₃ interface. The unreversed uncompensated Cr spin manifests itself in both the vertical shift of an element-specific magnetization curve and the relative peak intensity of soft-x-ray magnetic circular dichroism spectrum. We also demonstrate an in situ switching of the interfacial Cr spins and correspondingly a reversal of the exchange bias without interfacial atomic diffusion. Such switching shows the direct relationship between the interfacial antiferromagnetic spins and origin of the exchange bias. The demonstrated switching of exchange bias would likely offer a new design of advanced spintronics devices, using the perpendicular-exchange-biased system, with low power consumption and ultrafast operation.Y.Shiratsuchi, H.Noutomi, H.Oikawa, et al. Detection and in situ switching of unreversed interfacial antiferromagnetic spins in a perpendicular-exchange-biased system. Physical Review Letters 109, 077202 (2012); https://doi.org/10.1103/PhysRevLett.109.077202

Recent advances in the structural molecular biology of Ets transcription factors: interactions, interfaces and inhibition

The Ets family of eukaryotic transcription factors is based around the conserved Ets DNA-binding domain. Although their DNA-binding selectivity is biochemically and structurally well characterized, structures of homodimeric and ternary complexes point to Ets domains functioning as versatile protein-interaction modules. In the present paper, we review the progress made over the last decade to elucidate the structural mechanisms involved in modulation of DNA binding and protein partner selection during dimerization. We see that Ets domains, although conserved around a core architecture, have evolved to utilize a variety of interaction surfaces and binding mechanisms, reflecting Ets domains as dynamic interfaces for both DNA and protein interaction. Furthermore, we discuss recent advances in drug development for inhibition of Ets factors, and the roles structural biology can play in their future