Dirty Museum

A visual essay consisting of uncaptioned images which recover an item of past auto-ethnographic reflection. The images originate from only one roll of 35 mm B+W film which in 1991 documented the derelict fabric of a pre-restored emotive site in Irish national memory. In Kilmainham Gaol, Dublin the leaders of the Easter 1916 uprising were executed by firing squad. The essay describes author’s failed attempts to engage with the site beyond its solemn facticity

Approximate Differential Equations for Renormalization Group Functions in Models Free of Vertex Divergencies

I introduce an approximation scheme that allows to deduce differential equations for the renormalization group $\beta$-function from a Schwinger--Dyson equation for the propagator. This approximation is proven to give the dominant asymptotic behavior of the perturbative solution. In the supersymmetric Wess--Zumino model and a $\phi^3_6$ scalar model which do not have divergent vertex functions, this simple Schwinger--Dyson equation for the propagator captures the main quantum corrections.Comment: Clarification of the presentation of results. Equations and results unchanged. Match the published version. 12 page

Gene3D: comprehensive structural and functional annotation of genomes

Gene3D provides comprehensive structural and functional annotation of most available protein sequences, including the UniProt, RefSeq and Integr8 resources. The main structural annotation is generated through scanning these sequences against the CATH structural domain database profile-HMM library. CATH is a database of manually derived PDB-based structural domains, placed within a hierarchy reflecting topology, homology and conservation and is able to infer more ancient and divergent homology relationships than sequence-based approaches. This data is supplemented with Pfam-A, other non-domain structural predictions (i.e. coiled coils) and experimental data from UniProt. In order to enhance the investigations possible with this data, we have also incorporated a variety of protein annotation resources, including protein–protein interaction data, GO functional assignments, KEGG pathways, FUNCAT functional descriptions and links to microarray expression data. All of this data can be accessed through a newly re-designed website that has a focus on flexibility and clarity, with searches that can be restricted to a single genome or across the entire sequence database. Currently Gene3D contains over 3.5 million domain assignments for nearly 5 million proteins including 527 completed genomes. This is available at: http://gene3d.biochem.ucl.ac.uk

The Gene3D Web Services: a platform for identifying, annotating and comparing structural domains in protein sequences

The Gene3D structural domain database provides domain annotations for 7 million proteins, based on the manually curated structural domain superfamilies in CATH. These annotations are integrated with functional, genomic and molecular information from external resources, such as GO, EC, UniProt and the NCBI Taxonomy database. We have constructed a set of web services that provide programmatic access to this integrated database, as well as the Gene3D domain recognition tool (Gene3DScan) and protein sequence annotation pipeline for analysing novel protein sequences. Example queries include retrieving all curated GO terms for a domain superfamily or all the multi-domain architectures for the human genome. The services can be accessed using simple HTTP calls and are able to return results in a range of formats for quick downloading and easy parsing, graphical rendering and data storage. Hence, they provide a simple, but flexible means of integrating domain annotations and associated data sets into locally run pipelines and analysis software. The services can be found at http://gene3d.biochem.ucl.ac.uk/WebServices/

Mooring systems for marine energy converters

This is the author accepted manuscript. The final version is available from IEEE via the DOI in this record.This paper discusses several new technologies for mooring floating marine energy converter (MEC) devices, such as wave energy generators, tidal current turbines and floating wind turbines. The principal mooring component is a special nylon fiber rope which provides cyclic tension fatigue endurance much superior to that of conventional nylon ropes. The nylon fiber is treated with a new proprietary coating which has excellent wet yarn abrasion properties. The parallel-subrope type rope construction further reduces internal abrasion. Extensive laboratory testing was carried out on this new nylon rope design. Cyclic tension fatigue tests were conducted at mean loads and load amplitudes typical of actual service conditions and at higher mean loads and amplitudes. These tests demonstrate that the special nylon rope has essentially the same, desirable stretch characteristics as conventional nylon rope and has much better endurance performance. The mooring connection to the floating MEC device consists of a high-modulus fiber rope pendant which passes through a low-friction bell-mouth nylon fairlead on the MEC device. This eliminates the use of heavy, unreliable chain in this critical connection. A unique bag anchor system would be used on sand, clay, rock and other sea beds in which conventional drag embedment anchors and driven piles are impractical. The bag anchor consists of a large abrasion resistant carcass with lifting straps and top closure. The bag is transported to site in a collapsed form and is filled with local sand or aggregate to provide ballast weight. Several or many such bags are enclosed within a fiber rope net for deployment and are grouped together for connection to the mooring line. The paper will be of particular interest to designers of moorings for MEC systems in shallow water and severe wave environments. It will also be of interest for other mooring applications.This work would not have been possible without the funding and support of the Scottish Government, the Carbon Trust and Innovate UK.   The project was funded under the Marine Renewables Commercialization Fund (MRCF) and Marine Energy Supporting Array Technologies (MESAT).   Other partners who contributed to this project include Lloyd’s Register, DNV‐GL, TenCate, Orion Energy Centre, Nylacast, and offshore wind developer IDEOL.    Input and encouragement was provided by tidal power developer partner Bluewater, and wave energy developers AWS Ocean Energy and Pelamis.

The Metropolis and Evangelical Life: Coherence and Fragmentation in the ‘Lost City of London’

This article examines the interplay of different processes of cultural and subjective fragmentation experienced by conservative evangelical Anglicans, based on an ethnographic study of a congregation in central London. The author focuses on the evangelistic speaking practices of members of this church to explore how individuals negotiate contradictory norms of interaction as they move through different city spaces, and considers their response to tensions created by the demands of their workplace and their religious lives. Drawing on Georg Simmel’s ‘The Metropolis and Mental Life’, the author argues that their faith provides a sense of coherence and unity that responds to experiences of cultural fragmentation characteristic of everyday life in the city, while simultaneously leading to a specific consciousness of moral fragmentation that is inherent to conservative evangelicalism

Interplay between ferromagnetism, surface states, and quantum corrections in a magnetically doped topological insulator

The breaking of time-reversal symmetry by ferromagnetism is predicted to yield profound changes to the electronic surface states of a topological insulator. Here, we report on a concerted set of structural, magnetic, electrical and spectroscopic measurements of \MBS thin films wherein photoemission and x-ray magnetic circular dichroism studies have recently shown surface ferromagnetism in the temperature range 15 K $\leq T \leq 100$ K, accompanied by a suppressed density of surface states at the Dirac point. Secondary ion mass spectroscopy and scanning tunneling microscopy reveal an inhomogeneous distribution of Mn atoms, with a tendency to segregate towards the sample surface. Magnetometry and anisotropic magnetoresistance measurements are insensitive to the high temperature ferromagnetism seen in surface studies, revealing instead a low temperature ferromagnetic phase at $T \lesssim 5$ K. The absence of both a magneto-optical Kerr effect and anomalous Hall effect suggests that this low temperature ferromagnetism is unlikely to be a homogeneous bulk phase but likely originates in nanoscale near-surface regions of the bulk where magnetic atoms segregate during sample growth. Although the samples are not ideal, with both bulk and surface contributions to electron transport, we measure a magnetoconductance whose behavior is qualitatively consistent with predictions that the opening of a gap in the Dirac spectrum drives quantum corrections to the conductance in topological insulators from the symplectic to the orthogonal class.Comment: To appear in Phys. Rev.

On the set of zero coefficients of a function satisfying a linear differential equation

Let $K$ be a field of characteristic zero and suppose that $f:\mathbb{N}\to K$ satisfies a recurrence of the form $$f(n)\ =\ \sum_{i=1}^d P_i(n) f(n-i),$$ for $n$ sufficiently large, where $P_1(z),...,P_d(z)$ are polynomials in $K[z]$. Given that $P_d(z)$ is a nonzero constant polynomial, we show that the set of $n\in \mathbb{N}$ for which $f(n)=0$ is a union of finitely many arithmetic progressions and a finite set. This generalizes the Skolem-Mahler-Lech theorem, which assumes that $f(n)$ satisfies a linear recurrence. We discuss examples and connections to the set of zero coefficients of a power series satisfying a homogeneous linear differential equation with rational function coefficients.Comment: 11 page

The occupation of a box as a toy model for the seismic cycle of a fault

We illustrate how a simple statistical model can describe the quasiperiodic occurrence of large earthquakes. The model idealizes the loading of elastic energy in a seismic fault by the stochastic filling of a box. The emptying of the box after it is full is analogous to the generation of a large earthquake in which the fault relaxes after having been loaded to its failure threshold. The duration of the filling process is analogous to the seismic cycle, the time interval between two successive large earthquakes in a particular fault. The simplicity of the model enables us to derive the statistical distribution of its seismic cycle. We use this distribution to fit the series of earthquakes with magnitude around 6 that occurred at the Parkfield segment of the San Andreas fault in California. Using this fit, we estimate the probability of the next large earthquake at Parkfield and devise a simple forecasting strategy.Comment: Final version of the published paper, with an erratum and an unpublished appendix with some proof