Functional contribution of Pds5 to cohesin-mediated cohesion in human cells and Xenopus egg extracts

Sister chromatid cohesion is essential for proper segregation of the genome in mitosis and meiosis. Central to this process is cohesin, a multi-protein complex conserved from yeast to human. Previous genetic studies in fungi have identified Pds5/BimD/Spo76 as an additional factor implicated in cohesion. Here we describe the biochemical and functional characterization of two Pds5-like proteins, Pds5A and Pds5B, from vertebrate cells. In HeLa cells, Pds5 proteins physically interact with cohesin and associate with chromatin in a cohesin-dependent manner. Depletion of the cohesin subunit Scc1 by RNA interference leads to the assembly of chromosomes with severe cohesion defects. A similar yet milder set of defects is observed in cells with reduced levels of Pds5A or Pds5B. In Xenopus egg extracts, mitotic chromosomes assembled in the absence of Pds5A and Pds5B display no discernible defects in arm cohesion, but centromeric cohesion is apparently loosened. Unexpectedly, these chromosomes retain an unusually high level of cohesin. Thus, Pds5 proteins seem to affect the stable maintenance of cohesin-mediated cohesion and its efficient dissolution during mitosis. We propose that Pds5 proteins play both positive and negative roles in sister chromatid cohesion, possibly by directly modulating the dynamic interaction of cohesin with chromatin. This idea would explain why cells lacking Pds5 function display rather complex and diverse phenotypes in different organisms

A spectroscopic study of the cycling transition 4s[3/2]_2-4p[5/2]_3 at 811.8 nm in Ar-39: Hyperfine structure and isotope shift

Doppler-free saturated absorption spectroscopy is performed on an enriched radioactive Ar-39 sample. The spectrum of the 3s^2 3p^5 4s [3/2]_2 - 3s^2 3p^5 4p [5/2]_3 cycling transition at 811.8 nm is recorded, and its isotope shift between Ar-39 and Ar-40 is derived. The hyperfine coupling constants A and B for both the 4s [3/2]_2 and 4p [5/2]_3 energy levels in Ar-39 are also determined. The results partially disagree with a recently published measurement of the same transition. Based on earlier measurements as well as the current work, the isotope shift and hyperfine structure of the corresponding transition in Ar-37 are also calculated. These spectroscopic data are essential for the realization of laser trapping and cooling of Ar-37 and Ar-39

Tracer Applications of Noble Gas Radionuclides in the Geosciences

The noble gas radionuclides, including 81Kr (half-life = 229,000 yr), 85Kr (11 yr), and 39Ar (269 yr), possess nearly ideal chemical and physical properties for studies of earth and environmental processes. Recent advances in Atom Trap Trace Analysis (ATTA), a laser-based atom counting method, have enabled routine measurements of the radiokrypton isotopes, as well as the demonstration of the ability to measure 39Ar in environmental samples. Here we provide an overview of the ATTA technique, and a survey of recent progress made in several laboratories worldwide. We review the application of noble gas radionuclides in the geosciences and discuss how ATTA can help advance these fields, specifically determination of groundwater residence times using 81Kr, 85Kr, and 39Ar; dating old glacial ice using 81Kr; and an 39Ar survey of the main water masses of the oceans, to study circulation pathways and estimate mean residence times. Other scientific questions involving deeper circulation of fluids in the Earth's crust and mantle also are within the scope of future applications. We conclude that the geoscience community would greatly benefit from an ATTA facility dedicated to this field, with instrumentation for routine measurements, as well as for research on further development of ATTA methods

Developments in PF-HPLC (pneumatic-fluoropolymer high performance liquid chromatography)

Return missions are providing unique opportunities to deepen our knowledge of the formation and evolution of the solar system. The six Apollo missions have been critical in shaping our understanding of the Earth-Moon history [1], and the recent Genesis (solar wind; e.g., [2]), Stardust (cometary dust from Wild 2; e.g., [3,4]) and Hayabusa (dust from S-type asteroid from Itokawa; e.g., [5]) missions brought in a wealth of data

The REE isotopic compositions of the Earth

Lanthanides are a group of 14 naturally occurring elements with atomic numbers ranging from 57 (La) to 74 (Lu), which are also known as rare earth elements (REE). REEs are ubiquitous in minerals and rocks. The chemical properties of REEs vary as smooth functions of their atomic numbers, a phenomenon known as the contraction of the lanthanides. This is the main control behind REE fractionation in minerals and rocks. The relative abundance of REEs is usually presented as the REE pattern by normalizing the concentrations in the sample to those in reference materials such as chondrites and shales

Spectroscopic study of the cycling transition 4s[3/2]2-4p[5/2] 3 at 811.8 nm in Ar39: Hyperfine structure and isotope shift

Doppler-free saturated absorption spectroscopy is performed on an enriched radioactive Ar39 sample. The spectrum of the 3s23p54s[3/2]2- 3s23p54p[5/2]3 cycling transition at 811.8 nm is recorded, and its isotope shift between Ar39 and Ar40 is derived. The hyperfine coupling constants A and B for both the 4s[3/2]2 and 4p[5/2]3 energy levels in Ar39 are also determined. The results partially disagree with a recently published measurement of the same transition. Based on earlier measurements as well as the current work, the isotope shift and hyperfine structure of the corresponding transition in Ar37 are also calculated. These spectroscopic data are essential for the realization of laser trapping and cooling of Ar37,39. © 2011 American Physical Society

Crystallography Open Database – an open-access collection of crystal structures

The Crystallography Open Database (COD) is an ongoing initiative by crystallographers to gather all published inorganic, metal–organic and small organic molecule structures in one database, providing a straightforward search and retrieval interface. The COD adopts an open-access model for its >80 000 structure files

Introducing Teflon-HPLC

With increasingly ambitious sample return missions and instrumentation of ever-increasing sensitivity and precision, column chromatography appears to be the neglected step-child of isotope geochemistry and little improvement has been brought to it in the past few decades. Traditional column chromatography (i.e., open-system, gravity driven) techniques suffer from significant limitations pertaining to the overall length of column, resin size and diffusion effects, which can severely compromise separation efficiencies. Furthermore, some fine-scale separations still require complicated multi-step, highly time-consuming protocols (e.g. Ni-Mg, [1]). High-performance liquid chromatography (HPLC), while overcoming many of these limitations (e.g. a closed-system setup; the ability to pressurize the system, hence longer columns and better separation; a semi-automated set-up), is not immune to severe drawbacks. Mainly, 1) the liquid flow path often contains glass or metal parts which are easily corroded/dissolved by concentrated acids or organic solvents, leading to contamination of the samples, and 2) the electronic controls and housing are often spatially associated with the HPLC unit, drastically shortening the lifespan of the apparatus as the metallic parts rapidly corrode in these harsh chemical environments [e.g. 2]