Prenatal Transfer of Gut Bacteria in Rock Pigeon

Vertebrates evolved in concert with bacteria and have developed essential mutualistic relationships. Gut bacteria are vital for the postnatal development of most organs and the immune and metabolic systems and may likewise play a role during prenatal development. Prenatal transfer of gut bacteria is shown in four mammalian species, including humans. For the 92% of the vertebrates that are oviparous, prenatal transfer is debated, but it has been demonstrated in domestic chicken. We hypothesize that also non-domestic birds can prenatally transmit gut bacteria. We investigated this in medium-sized Rock pigeon (Columba livia), ensuring neonates producing fair-sized first faeces. The first faeces of 21 neonate rock pigeons hatched in an incubator, contained a microbiome (bacterial community) the composition of which resembled the cloacal microbiome of females sampled from the same population (N = 5) as indicated by multiple shared phyla, orders, families, and genera. Neonates and females shared 16.1% of the total number of OTUs present (2881), and neonates shared 45.5% of their core microbiome with females. In contrast, the five females shared only 0.3% of the 1030 female OTUs present. These findings suggest that prenatal gut bacterial transfer may occur in birds. Our results support the hypothesis that gut bacteria may be important for prenatal development and present a heritability pathway of gut bacteria in vertebrates

Full mitochondrial genome sequences of two endemic Philippine hornbill species (Aves: Bucerotidae) provide evidence for pervasive mitochondrial DNA recombination

<p>Abstract</p> <p>Background</p> <p>Although nowaday it is broadly accepted that mitochondrial DNA (mtDNA) may undergo recombination, the frequency of such recombination remains controversial. Its estimation is not straightforward, as recombination under homoplasmy (i.e., among identical mt genomes) is likely to be overlooked. In species with tandem duplications of large mtDNA fragments the detection of recombination can be facilitated, as it can lead to gene conversion among duplicates. Although the mechanisms for concerted evolution in mtDNA are not fully understood yet, recombination rates have been estimated from "one per speciation event" down to 850 years or even "during every replication cycle".</p> <p>Results</p> <p>Here we present the first complete mt genome of the avian family Bucerotidae, i.e., that of two Philippine hornbills, <it>Aceros waldeni </it>and <it>Penelopides panini</it>. The mt genomes are characterized by a tandemly duplicated region encompassing part of <it>cytochrome b</it>, 3 tRNAs, <it>NADH6</it>, and the control region. The duplicated fragments are identical to each other except for a short section in domain I and for the length of repeat motifs in domain III of the control region. Due to the heteroplasmy with regard to the number of these repeat motifs, there is some size variation in both genomes; with around 21,657 bp (<it>A. waldeni</it>) and 22,737 bp (<it>P. panini</it>), they significantly exceed the hitherto longest known avian mt genomes, that of the albatrosses. We discovered concerted evolution between the duplicated fragments within individuals. The existence of differences between individuals in coding genes as well as in the control region, which are maintained between duplicates, indicates that recombination apparently occurs frequently, i.e., in every generation.</p> <p>Conclusions</p> <p>The homogenised duplicates are interspersed by a short fragment which shows no sign of recombination. We hypothesize that this region corresponds to the so-called Replication Fork Barrier (RFB), which has been described from the chicken mitochondrial genome. As this RFB is supposed to halt replication, it offers a potential mechanistic explanation for frequent recombination in mitochondrial genomes.</p

Seasonal variations in the diet and foraging behaviour of dunlins Calidris alpina in a South European estuary: improved feeding conditions for northward migrants

During the annual cycle, migratory waders may face strikingly different feeding conditions as they move between breeding areas and wintering grounds. Thus, it is of crucial importance that they rapidly adjust their behaviour and diet to benefit from peaks of prey abundance, in particular during migration, when they need to accumulate energy at a fast pace. In this study, we compared foraging behaviour and diet of wintering and northward migrating dunlins in the Tagus estuary, Portugal, by video-recording foraging birds and analysing their droppings. We also estimated energy intake rates and analysed variations in prey availability, including those that were active at the sediment surface. Wintering and northward migrating dunlins showed clearly different foraging behaviour and diet. In winter, birds predominantly adopted a tactile foraging technique (probing), mainly used to search for small buried bivalves, with some visual surface pecking to collect gastropods and crop bivalve siphons. Contrastingly, in spring dunlins generally used a visual foraging strategy, mostly to consume worms, but also bivalve siphons and shrimps. From winter to spring, we found a marked increase both in the biomass of invertebrate prey in the sediment and in the surface activity of worms and siphons. The combination of these two factors, together with the availability of shrimps in spring, most likely explains the changes in the diet and foraging behaviour of dunlins. Northward migrating birds took advantage from the improved feeding conditions in spring, achieving 65% higher energy intake rates as compared with wintering birds. Building on these results and on known daily activity budgets for this species, our results suggest that Tagus estuary provides high-quality feeding conditions for birds during their stopovers, enabling high fattening rates. These findings show that this large wetland plays a key role as a stopover site for migratory waders within the East Atlantic Flyway.This study was supported by Fundação para a Ciência e a Tecnologia (http://alfa.fct.mctes.pt/) through Project PTDC/MAR/119920/2010 and grants to RCM (SFRH/BD/44871/2008), TC (SFRH/BPD/46967/2008) and CDS (SFRH/BPD/64786/2009). JPG was under a research contract within project “Sustainable Use of Marine Resources - MARES” (CENTRO-07-ST24-FEDER-002033), co-financed by “Mais Centro” Regional Operational Programme (Centro Region) and European Regional Development Fund (ERDF). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.publishe

Apparent annual survival of staging ruffs during a period of population decline: Insights from sex and site-use related differences

The ruff Philomachus pugnax, a lekking shorebird wintering in Africa and breeding across northern Eurasia, declined severely in its western range. Based on a capture-mark-resighting programme (2004–2011) in the westernmost staging area in Friesland (the Netherlands), we investigated changes in apparent annual survival in relation to age and sex to explore potential causes of decline. We also related temporal variation in apparent survival to environmental factors. We used the Capture- Mark-Recapture multievent statistical framework to overcome biases in survival estimates after testing for hidden heterogeneity of detection. This enabled the estimation of the probability to belong to high or low detectability classes. Apparent survival varied between years but was not related to weather patterns along the flyway, or to flood levels in the Sahel. Over time, a decline in apparent survival is suggested. Due to a short data series and flag loss in the last period this cannot be verified. Nevertheless, the patterns in sex-specific detectability and survival lead to new biological insights. Among highly detectable birds, supposedly most reliant on Friesland, males survived better than females (ΦHDmales = 0.74, range 0.51–0.93; ΦHDfemales = 0.51, range 0.24–0.81). Among low detectable birds, the pattern is reversed (ΦLDmales = 0.64, range 0.37–0.89; ΦLDfemales = 0.73, range 0.48–0.93). Probably the staging population contains a mixture of sexspecific migration strategies. A loss of staging females could greatly affect the dynamics of the western ruff population. Further unravelling of these population processes requires geographically extended demographic monitoring and the use of tracking devices

Intertidal Flats of East and Southeast Asia

A recent rise in economic prosperity in Asia, the most densely populated region of the world, has created a shortage of land for industry, housing developments and aquaculture. Consequently, large extents of tidal flat habitat in East and Southeast Asia, and especially in the Yellow Sea, have been lost since 1980, some through sediment inflow reduction, some through reclamation to satisfy demand for land. Throughout the East Asian-Australasian Flyway (EAAF), over 600,000 ha of tidal flats were the subject of further proposed land claims in 2012; in the Yellow Sea, planned conversions of &gt;300,000 ha would amount to a further loss of 40% of the remaining habitat. Here we articulate five arguments to contribute to convincing governments and other stakeholders in the EAAF that the current rate of loss is a disaster which must be urgently addressed. (1) Global responsibility: the EAAF is a large flyway supporting 176 waterbird species, of which 34 (19%) are globally threatened or Near Threatened. Nine more species are under consideration for such listing. Other flyways have 5-13 threatened species, amounting to 4-12%. (2) Regional responsibility: migratory shorebird species essentially make a single stop, or very few stops, when moving between non-breeding and breeding sites. In the EAAF, most of these critical sites where birds refuel for a few weeks are in the Yellow Sea. (3) Regional effects: shorebird population trends in Japan, and at a single wintering site in Australia showed that shorebirds dependent on the Yellow Sea during migration show the strongest population declines. (4) Local effects: migratory shorebirds that lost their fuelling site due to the largest land claim projects in the Yellow Sea (Saemangeum and Bohai Bay) did not all redistribute to the adjacent tidal flats, resulting in a net population decline. (5) Self-interest: Tidal flats and associated coastal ecosystems provide critical ecosystem services including protection from storm surges and sea level rise. This information was summarized in a 2012 IUCN report and subsequently EAAF governments have committed via IUCN Resolution 28 to protect the EAAF.</p